Rmu_sc0001944.1_g000007

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001944.1
OG0014198
Physical Location & Seq
Reverse (-)
27148 .. 27516
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001944.1_g000007.1.cds

Sequence Viewer

Length: 276 bp
atgactgatgataaaacaaagcagaaagccattgaagctgccgcagatatctttgggattgattcgatcgcggcagatctgaaggaccagaagctcacagtggtgggaatgatggacacagttgcagtggtgaagaagctgaagaaggtgggtaaagtcgacataatatctgttggtccagccaaggaagagaagaaagaagaaaagaaagatgagaaaaaagacgaaaagaaagagggcgagaaaaaagaagaaaagaaggaagacaaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

91

Amino Acids

10.18

Weight (kDa)

8.63

Isoelectric Point (pI)

15.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23760 AT5G23760
fragaria_vesca FvH4_7g29510 FvH4_7g29510
malus_domestica MD01G1201200.v1.1 MD07G1270100.v1.1 MD07G1270400.v1.1
prunus_persica Prupe.2G294600_v2.0.a1 Prupe.2G294600_v2.0.a1
pyrus_communis pycom01g21090
rosa_chinensis RchiOBHm_Chr1g0377351
rosa_laevigata RLG00000026526
rosa_multiflora Rmu_sc0001944.1_g000007
rosa_roxburghii Rroxscaffold_4G00281290
rosa_rugosa Rorug01G0402900
rosa_samantha Rh1AG420700
rosa_wichuraiana Rw1G036880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 71
AciI CCGC 2 cut(s) 42, 71
AcuI CTGAAG 2 cut(s) 101, 161
AgsI TTSAA 1 cut(s) 35
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 3 cut(s) 38, 94, 139
AluI AGCT 3 cut(s) 38, 94, 139
ApeKI GCWGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 85, 176
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 2 cut(s) 85, 176
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 106
BglII AGATCT 1 cut(s) 76
BisI GCNGC 3 cut(s) 39, 42, 72
BlsI GCNGC 3 cut(s) 40, 43, 73
Bme18I GGWCC 2 cut(s) 85, 176
BmgT120I GGNCC 2 cut(s) 85, 176
BpiI GAAGAC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 25
Bsh1236I CGCG 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 69
BsiEI CGRYCG 1 cut(s) 69
Bsp143I GATC 2 cut(s) 66, 76
BspACI CCGC 2 cut(s) 42, 71
BspFNI CGCG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 2 cut(s) 66, 76
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 100, 121
Bst6I CTCTTC 1 cut(s) 183
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 2 cut(s) 69, 79
BstMBI GATC 2 cut(s) 66, 76
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 105, 132
Cfr13I GGNCC 2 cut(s) 85, 176
CviJI RGCY 5 cut(s) 29, 38, 94, 139, 182
CviKI_1 RGCY 5 cut(s) 29, 38, 94, 139, 182
DpnI GATC 2 cut(s) 68, 78
DpnII GATC 2 cut(s) 66, 76
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 183
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 85, 176
Eco57I CTGAAG 2 cut(s) 101, 161
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaiI YATR 1 cut(s) 164
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 39, 42, 72
Fsp4HI GCNGC 3 cut(s) 39, 42, 72
GluI GCNGC 3 cut(s) 39, 42, 72
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 1 cut(s) 62
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 76, 139, 253
HpyCH4III ACNGT 2 cut(s) 100, 121
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 66, 76
LpnPI CCDG 2 cut(s) 101, 192
Lsp1109I GCAGC 1 cut(s) 25
MalI GATC 2 cut(s) 68, 78
MboI GATC 2 cut(s) 66, 76
MboII GAAGA 7 cut(s) 145, 154, 200, 205, 212, 263, 275
MflI RGATCY 1 cut(s) 76
MnlI CCTC 1 cut(s) 229
MslI CAYNNNNRTG 1 cut(s) 101
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 66, 76
OliI CACNNNNGTG 1 cut(s) 101
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 3 cut(s) 40, 43, 73
Ple19I CGATCG 1 cut(s) 69
PspPI GGNCC 2 cut(s) 85, 176
PsuI RGATCY 1 cut(s) 76
PvuI CGATCG 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 101
SalI GTCGAC 1 cut(s) 158
SatI GCNGC 3 cut(s) 39, 42, 72
Sau3AI GATC 2 cut(s) 66, 76
Sau96I GGNCC 2 cut(s) 85, 176
SetI ASST 4 cut(s) 40, 96, 141, 150
SgeI CNNG 5 cut(s) 82, 100, 191, 196, 253
SinI GGWCC 2 cut(s) 85, 176
SmiMI CAYNNNNRTG 1 cut(s) 101
SsiI CCGC 2 cut(s) 42, 71
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 100, 121
TaqI TCGA 2 cut(s) 65, 159
TauI GCSGC 2 cut(s) 44, 74
TfiI GAWTC 1 cut(s) 62
TscAI CASTG 2 cut(s) 105, 132
TseI GCWGC 1 cut(s) 38
TspRI CASTG 2 cut(s) 105, 132
VpaK11BI GGWCC 2 cut(s) 85, 176
XmiI GTMKAC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.