MD01G1201200.v1.1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0014198
Physical Location & Seq
Reverse (-)
29758079 .. 29759098
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1201200.v1.1.491

Sequence Viewer

Length: 291 bp
ATGGCTCAGGTGGTCCTGAAGGTTCTGACCATGACCGATGACAAAACAAAGCAGAAAGCCATTGAAGCTGCCGCTGATATTATTGGGATTGATTCGATCGCCGCGGATCTAAAGGACCAGAAGCTAACAGTGGTAGGACTGATGGATCCGGTGGCCGTAGTGAAGAAGTTGAAGAAGGTTGGTAAGGTGGACATAGTAACTGTCGGACCAGCCAAGGAAGAGAAGAAAGATGAGAAGAAAGATGGAAAGAAGGAGGATAAAAAAGAAGAAAAGAAGGAGGACAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

97

Amino Acids

10.55

Weight (kDa)

9.16

Isoelectric Point (pI)

13.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23760 AT5G23760
fragaria_vesca FvH4_7g29510 FvH4_7g29510
malus_domestica MD01G1201200.v1.1 MD07G1270100.v1.1 MD07G1270400.v1.1
prunus_persica Prupe.2G294600_v2.0.a1 Prupe.2G294600_v2.0.a1
pyrus_communis pycom01g21090
rosa_chinensis RchiOBHm_Chr1g0377351
rosa_laevigata RLG00000026526
rosa_multiflora Rmu_sc0001944.1_g000007
rosa_roxburghii Rroxscaffold_4G00281290
rosa_rugosa Rorug01G0402900
rosa_samantha Rh1AG420700
rosa_wichuraiana Rw1G036880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 104
AciI CCGC 3 cut(s) 72, 102, 104
AclWI GGATC 3 cut(s) 114, 140, 153
AcoI YGGCCR 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 38
AgsI TTSAA 2 cut(s) 65, 172
AluBI AGCT 2 cut(s) 68, 124
AluI AGCT 2 cut(s) 68, 124
AlwI GGATC 3 cut(s) 114, 140, 153
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 68
AspS9I GGNCC 3 cut(s) 13, 115, 206
AvaII GGWCC 3 cut(s) 13, 115, 206
BamHI GGATCC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 55
BccI CCATC 2 cut(s) 136, 236
BceAI ACGGC 1 cut(s) 140
BisI GCNGC 3 cut(s) 69, 72, 102
BlsI GCNGC 3 cut(s) 70, 73, 103
Bme18I GGWCC 3 cut(s) 13, 115, 206
BmgT120I GGNCC 3 cut(s) 13, 115, 206
BmiI GGNNCC 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 102, 213
BsaWI WCCGGW 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 102, 213
BseMII CTCAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 155
BsiEI CGRYCG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 149
BsnI GGCC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 96, 106, 145
BspACI CCGC 3 cut(s) 72, 102, 104
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 3 cut(s) 114, 140, 153
BssECI CCNNGG 2 cut(s) 102, 213
BssMI GATC 3 cut(s) 96, 106, 145
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 130, 202
Bst6I CTCTTC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 3 cut(s) 99, 109, 148
BstMBI GATC 3 cut(s) 96, 106, 145
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 106, 145
BstYI RGATCY 2 cut(s) 106, 145
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 135
Cfr13I GGNCC 3 cut(s) 13, 115, 206
Cfr42I CCGCGG 1 cut(s) 105
CviAII CATG 1 cut(s) 31
CviJI RGCY 6 cut(s) 5, 59, 68, 124, 155, 212
CviKI_1 RGCY 6 cut(s) 5, 59, 68, 124, 155, 212
DdeI CTNAG 1 cut(s) 6
DpnI GATC 3 cut(s) 98, 108, 147
DpnII GATC 3 cut(s) 96, 106, 145
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 213
Eco47I GGWCC 3 cut(s) 13, 115, 206
Eco57I CTGAAG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 32, 194
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 69, 72, 102
Fsp4HI GCNGC 3 cut(s) 69, 72, 102
GluI GCNGC 3 cut(s) 69, 72, 102
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 34
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 27, 206
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 4 cut(s) 13, 169, 244, 268
HpyCH4III ACNGT 2 cut(s) 130, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 34
KspI CCGCGG 1 cut(s) 105
Kzo9I GATC 3 cut(s) 96, 106, 145
LpnPI CCDG 4 cut(s) 29, 131, 162, 222
Lsp1109I GCAGC 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 196
MalI GATC 3 cut(s) 98, 108, 147
MboI GATC 3 cut(s) 96, 106, 145
MboII GAAGA 6 cut(s) 175, 184, 230, 235, 247, 278
MflI RGATCY 2 cut(s) 106, 145
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 2 cut(s) 247, 271
MspA1I CMGCKG 2 cut(s) 74, 104
MspI CCGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 3 cut(s) 96, 106, 145
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 3 cut(s) 70, 73, 103
Ple19I CGATCG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 3 cut(s) 13, 115, 206
PsuI RGATCY 2 cut(s) 106, 145
PvuI CGATCG 1 cut(s) 99
SacII CCGCGG 1 cut(s) 105
SatI GCNGC 3 cut(s) 69, 72, 102
Sau3AI GATC 3 cut(s) 96, 106, 145
Sau96I GGNCC 3 cut(s) 13, 115, 206
SetI ASST 6 cut(s) 12, 24, 70, 126, 180, 189
Sfr303I CCGCGG 1 cut(s) 105
SgeI CNNG 8 cut(s) 20, 28, 43, 115, 130, 161, 221, 226
SgrBI CCGCGG 1 cut(s) 105
SinI GGWCC 3 cut(s) 13, 115, 206
SsiI CCGC 3 cut(s) 72, 102, 104
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 130, 202
TaqI TCGA 1 cut(s) 95
TaqII GACCGA 1 cut(s) 50
TauI GCSGC 2 cut(s) 74, 104
TfiI GAWTC 1 cut(s) 92
TscAI CASTG 1 cut(s) 135
TseI GCWGC 1 cut(s) 68
TspRI CASTG 1 cut(s) 135
VpaK11BI GGWCC 3 cut(s) 13, 115, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.