Rorug01G0402900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014198
Physical Location & Seq
Reverse (-)
51024487 .. 51025909
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0402900.1

Sequence Viewer

Length: 765 bp
ATGCCGGCTCAATTAAGGCCTCCAAGAAATACGATATGCGGGGCATGTTATGAGGGAGCTAGAAGCCTCATCTCCTTCATAAACAAGCTCGAAGCTGCTCAAGGAATTGATAAAGCAAATTTGTGTAAGAATTTGATGAATGTGTCAACATGGGTGCTTGATATGAAAGATTCATCAGAAGAACTGGATGAGAAAATTAAATTCGTAAGCGGGTTTGTTGTTGCATTTAGAGATCAAATTCACACCGACATACAACTTCGTTCTGGTGAAAACAGACCTCCAATACCTGCACATAGAGCGTTATTGGCAATTAGATCGGAAATCTTTAGCAACATGCTCGACTCAGACGGATGCAAAGCCCCTCCTAGTGATGACACCATAACATTGCCCGAGTTGAATCATGAAGAGCTCGAGTGTTTCTTGGAACTCCTCTATAGTGGTGACTTGGCTGAAGAAAGGATGAGCAAGCATGTCTATTCATTATCCCTTGCAGCTGATAAGTACGGAGTATCATTCTTACAAAAGCTCTGTGAACGCCATATGCTCAAGTCTTTGAGTTCGTCCAATGCTCTCGATGTTTTAGAGGTCGCAGACACTTGTTCTTTTCTACTGTTGAAGGAGAATGCCTTGAACTACATTGTCAAAAACATGAAAGAGATCGTGTTTTCTGCTAAGTATGATACATTTGCACTTAAGAATCCGCATTTAAGCGTGCAAATTACAAGGGCATCATTGATGGATGCTAGAAGAAATTGCGTGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

254

Amino Acids

28.45

Weight (kDa)

5.73

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 77 - 184 2.5e-16 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23760 AT5G23760
fragaria_vesca FvH4_7g29510 FvH4_7g29510
malus_domestica MD01G1201200.v1.1 MD07G1270100.v1.1 MD07G1270400.v1.1
prunus_persica Prupe.2G294600_v2.0.a1 Prupe.2G294600_v2.0.a1
pyrus_communis pycom01g21090
rosa_chinensis RchiOBHm_Chr1g0377351
rosa_laevigata RLG00000026526
rosa_multiflora Rmu_sc0001944.1_g000007
rosa_roxburghii Rroxscaffold_4G00281290
rosa_rugosa Rorug01G0402900
rosa_samantha Rh1AG420700
rosa_wichuraiana Rw1G036880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AciI CCGC 3 cut(s) 39, 210, 701
AcsI RAATTY 4 cut(s) 118, 130, 200, 237
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 1 cut(s) 503
AflII CTTAAG 1 cut(s) 692
AgsI TTSAA 3 cut(s) 397, 616, 631
AluBI AGCT 6 cut(s) 59, 88, 95, 409, 494, 526
AluI AGCT 6 cut(s) 59, 88, 95, 409, 494, 526
Alw21I GWGCWC 1 cut(s) 411
Ama87I CYCGRG 2 cut(s) 389, 410
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 95, 491
ApoI RAATTY 4 cut(s) 118, 130, 200, 237
AsuHPI GGTGA 2 cut(s) 278, 452
AvaI CYCGRG 2 cut(s) 389, 410
BanII GRGCYC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 82, 503
BccI CCATC 1 cut(s) 730
BcgI CGANNNNNNTGC 4 cut(s) 297, 319, 331, 353
BfaI CTAG 3 cut(s) 60, 366, 744
BfmI CTRYAG 1 cut(s) 433
BfrI CTTAAG 1 cut(s) 692
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 2 cut(s) 96, 492
BlsI GCNGC 2 cut(s) 97, 493
BmeT110I CYCGRG 2 cut(s) 389, 410
BmsI GCATC 3 cut(s) 341, 730, 737
BpuEI CTTGAG 2 cut(s) 84, 530
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 189
Bse3DI GCAATG 1 cut(s) 383
BseGI GGATG 4 cut(s) 193, 356, 465, 745
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 2 cut(s) 82, 503
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 2 cut(s) 389, 410
BsiSI CCGG 1 cut(s) 5
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 1 cut(s) 19
BsoBI CYCGRG 2 cut(s) 389, 410
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 3 cut(s) 232, 314, 657
BspACI CCGC 3 cut(s) 39, 210, 701
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 356
BspHI TCATGA 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 295
BspQI GCTCTTC 1 cut(s) 399
BspTI CTTAAG 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 3 cut(s) 232, 314, 657
Bst4CI ACNGT 1 cut(s) 612
Bst6I CTCTTC 1 cut(s) 399
BstAFI CTTAAG 1 cut(s) 692
BstC8I GCNNGC 3 cut(s) 6, 467, 713
BstDEI CTNAG 2 cut(s) 343, 672
BstF5I GGATG 4 cut(s) 193, 356, 465, 745
BstKTI GATC 3 cut(s) 235, 317, 660
BstMBI GATC 3 cut(s) 232, 314, 657
BstMWI GCNNNNNNNGC 2 cut(s) 296, 305
BstNSI RCATGY 3 cut(s) 48, 337, 473
BstSFI CTRYAG 1 cut(s) 433
BstV1I GCAGC 2 cut(s) 82, 503
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 4 cut(s) 193, 356, 465, 745
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 3 cut(s) 6, 467, 713
CciI TCATGA 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 4
Csp6I GTAC 1 cut(s) 502
CviAII CATG 6 cut(s) 45, 150, 334, 401, 470, 649
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 2 cut(s) 343, 672
DpnI GATC 3 cut(s) 234, 316, 659
DpnII GATC 3 cut(s) 232, 314, 657
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Ecl136II GAGCTC 1 cut(s) 409
Eco147I AGGCCT 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 471
Eco88I CYCGRG 2 cut(s) 389, 410
EcoICRI GAGCTC 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 411
FaeI CATG 6 cut(s) 48, 153, 337, 404, 473, 652
FatI CATG 6 cut(s) 44, 149, 333, 400, 469, 648
FauI CCCGC 2 cut(s) 32, 203
FauNDI CATATG 1 cut(s) 540
Fnu4HI GCNGC 2 cut(s) 96, 492
FokI GGATG 4 cut(s) 200, 363, 472, 752
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 2 cut(s) 96, 492
FspBI CTAG 3 cut(s) 60, 366, 744
GluI GCNGC 2 cut(s) 96, 492
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 5
Hin1II CATG 6 cut(s) 48, 153, 337, 404, 473, 652
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 4 cut(s) 170, 341, 397, 697
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 278, 452
Hpy166II GTNNAC 2 cut(s) 147, 533
Hpy188I TCNGA 3 cut(s) 178, 319, 346
Hpy188III TCNNGA 2 cut(s) 401, 572
Hpy8I GTNNAC 2 cut(s) 147, 533
HpyAV CCTTC 2 cut(s) 85, 610
HpyCH4III ACNGT 1 cut(s) 612
HpyCH4V TGCA 6 cut(s) 224, 290, 354, 491, 689, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 305
HpyF3I CTNAG 2 cut(s) 343, 672
Hsp92II CATG 6 cut(s) 48, 153, 337, 404, 473, 652
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 3 cut(s) 232, 314, 657
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 18, 170, 249, 300
Lsp1109I GCAGC 2 cut(s) 82, 503
LweI GCATC 3 cut(s) 341, 730, 737
MaeI CTAG 3 cut(s) 60, 366, 744
MaeIII GTNAC 1 cut(s) 440
MalI GATC 3 cut(s) 234, 316, 659
MboI GATC 3 cut(s) 232, 314, 657
MboII GAAGA 4 cut(s) 191, 416, 464, 759
MhlI GDGCHC 1 cut(s) 411
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 7 cut(s) 30, 46, 77, 288, 372, 440, 577
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 4 cut(s) 14, 198, 693, 707
MspA1I CMGCKG 1 cut(s) 494
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 628
MwoI GCNNNNNNNGC 2 cut(s) 296, 305
NaeI GCCGGC 1 cut(s) 6
NdeI CATATG 1 cut(s) 540
NdeII GATC 3 cut(s) 232, 314, 657
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 6 cut(s) 48, 153, 337, 404, 473, 652
NmuCI GTSAC 1 cut(s) 440
NspI RCATGY 3 cut(s) 48, 337, 473
PaeR7I CTCGAG 1 cut(s) 410
PagI TCATGA 1 cut(s) 400
PceI AGGCCT 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 399
PctI GAATGC 1 cut(s) 628
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 3 cut(s) 170, 397, 697
PkrI GCNGC 2 cut(s) 97, 493
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 411
PspXI VCTCGAGB 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SacI GAGCTC 1 cut(s) 411
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 4 cut(s) 14, 198, 693, 707
SatI GCNGC 2 cut(s) 96, 492
Sau3AI GATC 3 cut(s) 232, 314, 657
SchI GAGTC 1 cut(s) 335
SduI GDGCHC 1 cut(s) 411
SetI ASST 9 cut(s) 61, 90, 97, 280, 289, 411, 496, 528, 588
SfaNI GCATC 3 cut(s) 341, 730, 737
SfcI CTRYAG 1 cut(s) 433
Sfr274I CTCGAG 1 cut(s) 410
SlaI CTCGAG 1 cut(s) 410
SmlI CTYRAG 4 cut(s) 99, 410, 545, 692
SmoI CTYRAG 4 cut(s) 99, 410, 545, 692
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 3 cut(s) 39, 210, 701
SspMI CTAG 3 cut(s) 60, 366, 744
SstI GAGCTC 1 cut(s) 411
StuI AGGCCT 1 cut(s) 19
TaaI ACNGT 1 cut(s) 612
TaqI TCGA 4 cut(s) 90, 339, 411, 573
TfiI GAWTC 3 cut(s) 170, 397, 697
Tru1I TTAA 4 cut(s) 14, 198, 693, 707
Tru9I TTAA 4 cut(s) 14, 198, 693, 707
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 2 cut(s) 95, 491
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 7 cut(s) 67, 152, 162, 179, 417, 468, 665
TspGWI ACGGA 2 cut(s) 363, 519
Vha464I CTTAAG 1 cut(s) 692
XapI RAATTY 4 cut(s) 118, 130, 200, 237
XceI RCATGY 3 cut(s) 48, 337, 473
XhoI CTCGAG 1 cut(s) 410
XspI CTAG 3 cut(s) 60, 366, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.