FvH4_7g30020

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
21944645 .. 21947624
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30020.t1

Sequence Viewer

Length: 915 bp
ATGGCACCTCCTCGAGGTCGTGGTGGTTCTGGTGGGTTCAGAGGTGGAAGGAGTGATGGAGGAGGGAGAGGAGGCCGGAGCGGAGGCCGTGGCTTCGGTGACAGAAGTAGTGGGTTTAAACCAAGTGGAGGCCGAGGAGGTGACCGCGGCCGTGGAAGAGGCAGAGGCCGTGGAGGAATGAAGGGTGGGACCAAGGTCGTCGTTGAGCCCCATAGACATGCTGGGGTTTTCCTTGCTAAGGGTAAAGAGGATGCTCTTGTGACCAGGAACATGGTCCCCGGAGAAGCCGTCTACAATGAGAAGAGGATTTCTGTTCAGAATGAGGATGGAACTAAAGTCGAGTACAGGATTTGGAACCCTTTCCGTTCCAAGTTGGCTGCTGCTATACTTGGTGGTGTTGATGAGATATGGATTAAACCTGGTGCGAGGGTTCTCTACCTGGGGGCTGCTTCTGGTACCACAGTCTCACATGTTTCAGACCTTGTTGGCCCTACTGGATGTGTATATGCTGTTGAGTTTTCACATAGAAGTGGTAGAGACTTGGTAAACATGGCGAAGAAGAGAACTAATGTCATACCAATTATTGAAGATGCTAGGCATCCAGCGAAATACCGTATGCTTGTCGCCATGGTTGATGTCATATTTTCTGATGTTGCTCAACCTGATCAGGCCAGGATTCTAGCTTTGAATGCTTCATATTTTCTTAAATCCGGAGGGCACTTTGTCATCTCTATCAAGGCTAATTGTATCGACTGCACTGTTCCTGCCGAAACAGTGTTTGCTTCTGAGGTGAAGAAGCTGCAGGCAGAACAGTTTAAGCCTTTTGAACAAGTGACTCTTGAACCTTTTGAGCGTGATCATGCTTGTGTTATTGGAGGTTATCGTATGCCTAAGAAGTCAAAGGCCACTGCCTAG

Protein Analysis

305

Amino Acids

32.56

Weight (kDa)

10.03

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fibrillarin PF01269 68 - 295 3e-108 Fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015862)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 12
Acc65I GGTACC 1 cut(s) 455
AccB1I GGYRCC 2 cut(s) 4, 455
AccBSI CCGCTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 710
AciI CCGC 3 cut(s) 81, 145, 147
AcoI YGGCCR 1 cut(s) 148
AfaI GTAC 2 cut(s) 344, 457
AfiI CCNNNNNNNGG 3 cut(s) 14, 128, 238
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 4 cut(s) 587, 688, 827, 842
AjnI CCWGG 4 cut(s) 263, 418, 438, 671
AluBI AGCT 2 cut(s) 683, 799
AluI AGCT 2 cut(s) 683, 799
Alw26I GTCTC 2 cut(s) 469, 531
Ama87I CYCGRG 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 710
AoxI GGCC 8 cut(s) 73, 85, 130, 148, 166, 487, 669, 903
ApeKI GCWGC 4 cut(s) 377, 380, 446, 799
Asp700I GAANNNNTTC 1 cut(s) 359
Asp718I GGTACC 1 cut(s) 455
AspS9I GGNCC 3 cut(s) 189, 274, 488
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 3 cut(s) 110, 152, 802
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 2 cut(s) 189, 274
BaeGI GKGCMC 1 cut(s) 720
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BanI GGYRCC 2 cut(s) 4, 455
BanII GRGCYC 1 cut(s) 210
BbvI GCAGC 4 cut(s) 364, 367, 433, 786
BccI CCATC 2 cut(s) 50, 320
BceAI ACGGC 4 cut(s) 72, 135, 153, 272
BciT130I CCWGG 4 cut(s) 265, 420, 440, 673
BclI TGATCA 2 cut(s) 664, 856
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 2 cut(s) 469, 531
BfaI CTAG 3 cut(s) 594, 680, 913
BfmI CTRYAG 1 cut(s) 800
BisI GCNGC 5 cut(s) 148, 378, 381, 447, 800
BlsI GCNGC 5 cut(s) 149, 379, 382, 448, 801
Bme1390I CCNGG 5 cut(s) 265, 279, 420, 440, 673
Bme18I GGWCC 2 cut(s) 189, 274
BmeT110I CYCGRG 1 cut(s) 12
BmgT120I GGNCC 3 cut(s) 189, 274, 488
BmiI GGNNCC 5 cut(s) 6, 190, 276, 356, 457
BmrFI CCNGG 5 cut(s) 265, 279, 420, 440, 673
BmsI GCATC 3 cut(s) 241, 580, 607
BoxI GACNNNNGTC 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 279
BsaJI CCNNGG 9 cut(s) 88, 133, 145, 151, 169, 192, 277, 439, 627
BsaWI WCCGGW 1 cut(s) 710
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 128, 238
Bse1I ACTGG 1 cut(s) 499
BseAI TCCGGA 1 cut(s) 710
BseBI CCWGG 4 cut(s) 265, 420, 440, 673
BseDI CCNNGG 9 cut(s) 88, 133, 145, 151, 169, 192, 277, 439, 627
BseGI GGATG 4 cut(s) 256, 331, 503, 598
BseLI CCNNNNNNNGG 3 cut(s) 14, 128, 238
BseMII CTCAG 1 cut(s) 777
BseNI ACTGG 1 cut(s) 499
BseRI GAGGAG 3 cut(s) 75, 84, 150
BseSI GKGCMC 1 cut(s) 720
BseX3I CGGCCG 1 cut(s) 148
BseXI GCAGC 4 cut(s) 364, 367, 433, 786
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 739
Bsh1236I CGCG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 8 cut(s) 75, 87, 132, 150, 168, 489, 671, 905
BshNI GGYRCC 2 cut(s) 4, 455
BsiEI CGRYCG 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 3 cut(s) 76, 279, 711
BslFI GGGAC 2 cut(s) 202, 260
BslI CCNNNNNNNGG 3 cut(s) 14, 128, 238
BsmAI GTCTC 2 cut(s) 469, 531
BsmFI GGGAC 2 cut(s) 202, 260
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 8 cut(s) 75, 87, 132, 150, 168, 489, 671, 905
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 2 cut(s) 210, 720
Bsp13I TCCGGA 1 cut(s) 710
Bsp143I GATC 2 cut(s) 664, 856
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 3 cut(s) 81, 145, 147
BspANI GGCC 8 cut(s) 75, 87, 132, 150, 168, 489, 671, 905
BspCNI CTCAG 1 cut(s) 778
BspEI TCCGGA 1 cut(s) 710
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 5 cut(s) 6, 190, 276, 356, 457
BspMAI CTGCAG 1 cut(s) 804
BspT107I GGYRCC 2 cut(s) 4, 455
BsrBI CCGCTC 1 cut(s) 81
BsrI ACTGG 1 cut(s) 499
BssECI CCNNGG 9 cut(s) 88, 133, 145, 151, 169, 192, 277, 439, 627
BssMI GATC 2 cut(s) 664, 856
BssT1I CCWWGG 2 cut(s) 192, 627
Bst2UI CCWGG 4 cut(s) 265, 420, 440, 673
Bst4CI ACNGT 5 cut(s) 463, 614, 760, 775, 813
Bst6I CTCTTC 3 cut(s) 151, 296, 554
BstC8I GCNNGC 1 cut(s) 804
BstDEI CTNAG 3 cut(s) 237, 786, 891
BstDSI CCRYGG 5 cut(s) 88, 145, 151, 169, 627
BstEII GGTNACC 1 cut(s) 140
BstENI CCTNNNNNAGG 2 cut(s) 12, 236
BstF5I GGATG 4 cut(s) 256, 331, 503, 598
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 2 cut(s) 667, 859
BstMAI GTCTC 2 cut(s) 469, 531
BstMBI GATC 2 cut(s) 664, 856
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 689
BstNI CCWGG 4 cut(s) 265, 420, 440, 673
BstNSI RCATGY 2 cut(s) 221, 473
BstPAI GACNNNNGTC 1 cut(s) 194
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 5 cut(s) 263, 277, 418, 438, 671
BstSFI CTRYAG 1 cut(s) 800
BstSLI GKGCMC 1 cut(s) 720
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 4 cut(s) 364, 367, 433, 786
BstXI CCANNNNNNTGG 1 cut(s) 271
BstZI CGGCCG 1 cut(s) 148
BsuRI GGCC 8 cut(s) 75, 87, 132, 150, 168, 489, 671, 905
BtgI CCRYGG 5 cut(s) 88, 145, 151, 169, 627
BtsCI GGATG 4 cut(s) 256, 331, 503, 598
BtsI GCAGTG 1 cut(s) 906
BtsIMutI CAGTG 3 cut(s) 756, 780, 906
Cac8I GCNNGC 1 cut(s) 804
Cfr13I GGNCC 3 cut(s) 189, 274, 488
Cfr42I CCGCGG 1 cut(s) 148
CsiI ACCWGGT 1 cut(s) 418
Csp6I GTAC 2 cut(s) 343, 456
CviAII CATG 6 cut(s) 218, 271, 470, 550, 628, 860
CviQI GTAC 2 cut(s) 343, 456
DdeI CTNAG 3 cut(s) 237, 786, 891
DpnI GATC 2 cut(s) 666, 858
DpnII GATC 2 cut(s) 664, 856
DraI TTTAAA 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 148
EagI CGGCCG 1 cut(s) 148
Eam1104I CTCTTC 3 cut(s) 151, 296, 554
EarI CTCTTC 3 cut(s) 151, 296, 554
EclXI CGGCCG 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 192, 627
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 189, 274
Eco52I CGGCCG 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 12
Eco91I GGTNACC 1 cut(s) 140
EcoNI CCTNNNNNAGG 2 cut(s) 12, 236
EcoO65I GGTNACC 1 cut(s) 140
EcoRII CCWGG 4 cut(s) 263, 418, 438, 671
EcoT14I CCWWGG 2 cut(s) 192, 627
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 2 cut(s) 192, 627
FaeI CATG 6 cut(s) 221, 274, 473, 553, 631, 863
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FaqI GGGAC 2 cut(s) 202, 260
FatI CATG 6 cut(s) 217, 270, 469, 549, 627, 859
FbaI TGATCA 2 cut(s) 664, 856
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 5 cut(s) 148, 378, 381, 447, 800
FokI GGATG 4 cut(s) 263, 338, 510, 585
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 5 cut(s) 148, 378, 381, 447, 800
FspBI CTAG 3 cut(s) 594, 680, 913
GluI GCNGC 5 cut(s) 148, 378, 381, 447, 800
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 8 cut(s) 75, 87, 132, 150, 168, 489, 671, 905
HapII CCGG 3 cut(s) 76, 279, 711
Hin1II CATG 6 cut(s) 221, 274, 473, 553, 631, 863
HinfI GANTC 2 cut(s) 676, 835
HpaII CCGG 3 cut(s) 76, 279, 711
HphI GGTGA 3 cut(s) 110, 152, 802
Hpy166II GTNNAC 2 cut(s) 292, 547
Hpy188I TCNGA 5 cut(s) 41, 318, 478, 649, 787
Hpy188III TCNNGA 2 cut(s) 711, 839
Hpy8I GTNNAC 2 cut(s) 292, 547
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 42, 175
HpyCH4III ACNGT 5 cut(s) 463, 614, 760, 775, 813
HpyCH4V TGCA 2 cut(s) 756, 802
HpyF10VI GCNNNNNNNGC 1 cut(s) 689
HpyF3I CTNAG 3 cut(s) 237, 786, 891
Hsp92II CATG 6 cut(s) 221, 274, 473, 553, 631, 863
Kpn2I TCCGGA 1 cut(s) 710
KpnI GGTACC 1 cut(s) 459
Ksp22I TGATCA 2 cut(s) 664, 856
KspI CCGCGG 1 cut(s) 148
Kzo9I GATC 2 cut(s) 664, 856
LmnI GCTCC 1 cut(s) 78
Lsp1109I GCAGC 4 cut(s) 364, 367, 433, 786
LweI GCATC 3 cut(s) 241, 580, 607
MabI ACCWGGT 1 cut(s) 418
MaeI CTAG 3 cut(s) 594, 680, 913
MaeIII GTNAC 4 cut(s) 98, 140, 259, 832
MalI GATC 2 cut(s) 666, 858
MbiI CCGCTC 1 cut(s) 81
MboI GATC 2 cut(s) 664, 856
MboII GAAGA 6 cut(s) 168, 313, 568, 571, 599, 805
MhlI GDGCHC 2 cut(s) 210, 720
MluCI AATT 2 cut(s) 579, 742
MlyI GAGTC 1 cut(s) 829
MroI TCCGGA 1 cut(s) 710
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 4 cut(s) 117, 414, 705, 816
MslI CAYNNNNRTG 3 cut(s) 216, 528, 864
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 3 cut(s) 76, 279, 711
MspR9I CCNGG 5 cut(s) 265, 279, 420, 440, 673
MssI GTTTAAAC 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 4 cut(s) 265, 420, 440, 673
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 689
NciI CCSGG 1 cut(s) 279
NcoI CCATGG 1 cut(s) 627
NdeII GATC 2 cut(s) 664, 856
NlaIII CATG 6 cut(s) 221, 274, 473, 553, 631, 863
NlaIV GGNNCC 5 cut(s) 6, 190, 276, 356, 457
NmeAIII GCCGAG 1 cut(s) 158
NmuCI GTSAC 4 cut(s) 98, 140, 259, 832
NspI RCATGY 2 cut(s) 221, 473
PaeR7I CTCGAG 1 cut(s) 12
PciI ACATGT 1 cut(s) 469
PctI GAATGC 1 cut(s) 694
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 676
PkrI GCNGC 5 cut(s) 149, 379, 382, 448, 801
PleI GAGTC 1 cut(s) 829
PmeI GTTTAAAC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 829
PscI ACATGT 1 cut(s) 469
PshAI GACNNNNGTC 1 cut(s) 194
Psp6I CCWGG 4 cut(s) 263, 418, 438, 671
PspEI GGTNACC 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 4 cut(s) 263, 418, 438, 671
PspN4I GGNNCC 5 cut(s) 6, 190, 276, 356, 457
PspPI GGNCC 3 cut(s) 189, 274, 488
PspXI VCTCGAGB 1 cut(s) 12
PstI CTGCAG 1 cut(s) 804
RsaI GTAC 2 cut(s) 344, 457
RsaNI GTAC 2 cut(s) 343, 456
RseI CAYNNNNRTG 3 cut(s) 216, 528, 864
SacII CCGCGG 1 cut(s) 148
SaqAI TTAA 4 cut(s) 117, 414, 705, 816
SatI GCNGC 5 cut(s) 148, 378, 381, 447, 800
Sau3AI GATC 2 cut(s) 664, 856
Sau96I GGNCC 3 cut(s) 189, 274, 488
SchI GAGTC 1 cut(s) 829
ScrFI CCNGG 5 cut(s) 265, 279, 420, 440, 673
SduI GDGCHC 2 cut(s) 210, 720
SexAI ACCWGGT 1 cut(s) 418
SfaNI GCATC 3 cut(s) 241, 580, 607
SfcI CTRYAG 1 cut(s) 800
Sfr274I CTCGAG 1 cut(s) 12
Sfr303I CCGCGG 1 cut(s) 148
SgrBI CCGCGG 1 cut(s) 148
SinI GGWCC 2 cut(s) 189, 274
SlaI CTCGAG 1 cut(s) 12
SmiMI CAYNNNNRTG 3 cut(s) 216, 528, 864
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 2 cut(s) 579, 742
SsiI CCGC 3 cut(s) 81, 145, 147
SspMI CTAG 3 cut(s) 594, 680, 913
StyD4I CCNGG 5 cut(s) 263, 277, 418, 438, 671
StyI CCWWGG 2 cut(s) 192, 627
TaaI ACNGT 5 cut(s) 463, 614, 760, 775, 813
TaqI TCGA 3 cut(s) 13, 339, 750
TasI AATT 2 cut(s) 579, 742
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 676
Tru1I TTAA 4 cut(s) 117, 414, 705, 816
Tru9I TTAA 4 cut(s) 117, 414, 705, 816
TscAI CASTG 3 cut(s) 763, 780, 913
TseFI GTSAC 4 cut(s) 98, 140, 259, 832
TseI GCWGC 4 cut(s) 377, 380, 446, 799
Tsp45I GTSAC 4 cut(s) 98, 140, 259, 832
TspDTI ATGAA 2 cut(s) 194, 684
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 3 cut(s) 763, 780, 913
VpaK11BI GGWCC 2 cut(s) 189, 274
XagI CCTNNNNNAGG 2 cut(s) 12, 236
XceI RCATGY 2 cut(s) 221, 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 3 cut(s) 594, 680, 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.