Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000970

Physical Location & Seq

Genomic Coordinates Forward (+)

51278710 .. 51284619

Gene Structure 5910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0406000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGGATCTTGAGAAGGCCAAGTGTTGGGACACTTCAAAGAAGAACTCTTGGAAGAATACTCTGCTCTTAGCATACCAGAGCCTTGGTGTAGTATATGGGGACCTGAGCATTTCCCCTCTCTATGTCTACAAGAGCGCATTCGCAGAAGATATTCAACATTCAGAGACCAATGAAGAGATTTATGGTGTACTTTCCTTTGTGTTCTGGACCCTTACTCTAGTCCCTCTGGTCAAGTATGTCTTCATAGTCCTTAGAGCCGACGATAATGGAGAGGGTGGTACTTTTGCACTCTACTCATTGATATGTAGGCATGCCAAAGTAAGCCTTCTACCGAACCGTCAGCTTGCTGATGAGGCGGTCTCTACTTATAAATTGGAGCACGCACCGGAGAAGGAAAAGAGTTCCTGGTTGAAAGTGGTACTTGAGAGGTCCAAGACCTTGCATACTGCTTTGCTGGTTCTTGTTCTTCTTGGCACTTGTATGGTAATTGGTGATGGAGTGCTCACTCCCGCCATGTCAGTATTTTCTGCAGTGTCTGGCCTGGAATTATCCATGTCCAAGGAGCATCACTTGTATGCTGTGGTTCCGATTACTTGTTTCATATTGCTGTGTCTATTTGCACTTCAACACTATGGAACACATCGAGTTGGATTCTTTTTTGCACCAGTGGTGGTGGCATGGCTTCTATGCATCAGTGCTCTTGGCTTATATAACATATTCCACTGGAATCAGCATGTCTATCAAGCTCTTTCTCCATATTACATGTTCAAGTTCTTGAGGAAGACAAGGACAAGTGGATGGATGTCTCTAGGTGGAATATTGCTGTGCATAACAGGTTCAGAGGCAATGTTTGCTGATCTCGGCCACTTCTCTTATTCTGCCATTCAAGTTGCTTTTACCTTTTTGGTTTATCCAGCACTTATATTGGCATATATGGGTCAAGCTGCTTACTTATCACAACATCACCACAGCAACCACCAGATCGGCTTTTATGTCTCAGTCCCAAAAATTGTGCGATGGCCAGTCCTTATACTAGCCATTCTTGCTTCTGTTGTGGGAAGCCAAGCAATCATCAGTGGAACATTTTCTATCATAAACCAGAGCCAGTCACTTGGTTGCTTCCCAAGGGTCAAGGTTGTTCACACTTCTGACAAGAAACACGGCCAGATATATATCCCTGAGATCAATTGGATGCTGATGATCCTCTGCATTGCTGTTACCATTGGATTCAGAGACACAAAACACATAGGGAATGCATCAGGGTTAGCTGTGATGGCAGTTATGCTAGTGACCACATGCCTAACTTCCTTGGTGATCATCCTTTGTTGGCACAAACCACCTATTCTAGCCCTTTGCTTCTTACTCTTCTTTGGGTCAATTGAATTGCTGTACTTCTCAGCTTCACTCACCAAGTTCCGCGAGGGTGCCTGGCTTCCCATTCTTCTCGCCCTGTTCCTCATGACCATCATGTATGTTTGGCACTATGCAACTATCAAGAAGTACGAATATGACCTTCACAACAAGGTTTCATTAGATTGGCTTTTAGCCTTGGGTCCAAGCTTGGGAATAGCTCGAGTCCCCGGAATTGGTCTCGTGTTCACTGATCTCACCTCTGGCATTCCTGCTAACTTCTCCCGCTTTGTAACCAACCTCCCCGCTTTCCACCGCATCCTAGTCTTTGTGTGTGTAAAATCAGTCCCTGTTCCTTATGTGCCTCCTGCTGAGCGATACCTAGTGGGTCGTGTTGGTCCTGCAGCTCATCGGTCCTATAGGTGCATTGTTCGGTATGGATACCGAGATGTTCACCAGGATGTTGACTCCTTTGAATCCCAGCTAGTTGAGAAGCTGTCTGATTTCATCCGTTATGATTGGTATCGAACTCATAGAACTAGCTCAGGCACGGAAGATGATGCGTCACGCTCTACTGATGTTAGTGACTGTAGATTGGCTGTGATTGGAACAGTGGCATTTTCTGGTGTACCAGCTTATGAGATGGAGGAGACTCAGCAGACAAGTGTATCTGGTTTTGCAACTGTTGAAAGTGTCACAGATGTTATTGAGATGGCACCCGTAGAAAGAAGAGTGAGGTTTGCAATTGATGATCAGGAGTCTCAGGCTGATACGCTGACTGACAATGACATGTTACGAGAAGAGCTCCACGATCTGCATGAAGCTCAGCAAGCCGGGACCGCGTTTATACTTGGGCATACACATGTTAAAGCAAAGCAAGGCTCATCTGTGATGAAGAGATTGGCCATTAACTTCGGATACAATTTCATGAGGAGGAACTGCAGGGGGGCGGATGTGGCGCTCAAGGTGCCACCAGTGTCGCTTCTTGAGGTTGGCATGGTCTATATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

787

Amino Acids

88.07

Weight (kDa)

7.61

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	23 - 515	1.5e-170	K+ potassium transporter integral membrane domain
K_trans_C	PF22776	527 - 785	9.2e-30	K+ potassium transporter C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25640 AT4G25640 AT4G25640
fragaria_vesca	FvH4_7g30023 FvH4_7g30023 FvH4_7g30023 FvH4_7g30023 FvH4_7g30080 FvH4_7g30080 FvH4_7g30080
malus_domestica	MD01G1142500.v1.1 MD01G1206300.v1.1 MD01G1206500.v1.1 MD01G1206600.v1.1 MD01G1206700.v1.1 MD07G1277000.v1.1 MD07G1277200.v1.1 MD07G1277300.v1.1
prunus_persica	Prupe.2G037200_v2.0.a1 Prupe.2G298900_v2.0.a1 Prupe.2G299100_v2.0.a1 Prupe.2G299200_v2.0.a1 Prupe.2G299200_v2.0.a1 Prupe.2G299300_v2.0.a1
pyrus_communis	pycom01g16260 pycom01g21590 pycom01g21620 pycom01g21640 pycom01g21650 pycom01g21660 pycom01g21670 pycom07g25180 pycom07g25230
rosa_chinensis	RchiOBHm_Chr1g0378001 RchiOBHm_Chr1g0378071
rosa_laevigata	RLG00000026475 RLG00000026479
rosa_multiflora	Rmu_sc0001465.1_g000016 Rmu_sc0002068.1_g000003 Rmu_sc0005268.1_g000004 Rmu_sc0005268.1_g000009
rosa_roxburghii	Rroxscaffold_156G00440330 Rroxscaffold_156G00440380 Rroxscaffold_156G00440420 Rroxscaffold_4G00280810 Rroxscaffold_4G00280850 Rroxscaffold_4G00300720
rosa_rugosa	Rorug01G0406000 Rorug01G0406100
rosa_samantha	Rh1AG423700 Rh1AG425200 Rh1BG384900 Rh1CG397900 Rh1CG398900 Rh1DG415400 Rh1DG416100 Rh3AG010400 Rh3BG010100 Rh3CG009800 Rh4CG451900
rosa_wichuraiana	Rw0G004090 Rw1G037310 Rw1G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccB1I	GGYRCC	3 cut(s)	1424, 2065, 2317
AccB7I	CCANNNNNTGG	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	2 cut(s)	1419, 2192
AciI	CCGC	8 cut(s)	356, 510, 1417, 1636, 1656, 1666, 2190, 2300
AclWI	GGATC	2 cut(s)	12, 1195
AcoI	YGGCCR	4 cut(s)	862, 1019, 1162, 2253
AfaI	GTAC	6 cut(s)	189, 280, 420, 1391, 1502, 1980
AfiI	CCNNNNNNNGG	3 cut(s)	24, 1562, 1586
AflIII	ACRYGT	3 cut(s)	762, 2139, 2212
AgsI	TTSAA	9 cut(s)	36, 155, 412, 626, 769, 887, 1382, 1826, 2039
AjnI	CCWGG	4 cut(s)	404, 540, 1427, 1806
Alw21I	GWGCWC	4 cut(s)	381, 504, 700, 2157
Alw26I	GTCTC	8 cut(s)	158, 364, 810, 1000, 1227, 1595, 1994, 2115
AlwI	GGATC	2 cut(s)	12, 1195
AlwNI	CAGNNNCTG	2 cut(s)	536, 1700
Ama87I	CYCGRG	1 cut(s)	1572
AoxI	GGCC	6 cut(s)	15, 538, 862, 1019, 1162, 2253
ApeKI	GCWGC	2 cut(s)	944, 1754
Asp700I	GAANNNNTTC	2 cut(s)	150, 1084
AspLEI	GCGC	2 cut(s)	137, 2311
AspS9I	GGNCC	7 cut(s)	100, 207, 429, 1553, 1748, 1764, 2187
AsuC2I	CCSGG	2 cut(s)	1581, 2185
AsuHPI	GGTGA	6 cut(s)	503, 956, 1324, 1399, 1600, 1796
AvaI	CYCGRG	1 cut(s)	1572
AvaII	GGWCC	7 cut(s)	100, 207, 429, 1553, 1748, 1764, 2187
BaeI	ACNNNNGTAYC	2 cut(s)	2001, 2034
BalI	TGGCCA	2 cut(s)	1021, 2255
BanI	GGYRCC	3 cut(s)	1424, 2065, 2317
BanII	GRGCYC	1 cut(s)	2157
BauI	CACGAG	1 cut(s)	1592
BbsI	GAAGAC	2 cut(s)	232, 788
Bbv12I	GWGCWC	4 cut(s)	381, 504, 700, 2157
BbvI	GCAGC	2 cut(s)	931, 1766
BccI	CCATC	7 cut(s)	488, 792, 1011, 1267, 1472, 1987, 2056
BceAI	ACGGC	1 cut(s)	1177
BciT130I	CCWGG	4 cut(s)	406, 542, 1429, 1808
BciVI	GTATCC	2 cut(s)	1784, 2261
BclI	TGATCA	2 cut(s)	1314, 2101
BcnI	CCSGG	2 cut(s)	1581, 2185
BcoDI	GTCTC	8 cut(s)	158, 364, 810, 1000, 1227, 1595, 1994, 2115
BfaI	CTAG	9 cut(s)	218, 809, 1034, 1286, 1346, 1673, 1733, 1835, 1890
BfmI	CTRYAG	5 cut(s)	528, 1752, 1768, 1939, 2290
BfoI	RGCGCY	1 cut(s)	2312
BfuI	GTATCC	2 cut(s)	1784, 2261
BisI	GCNGC	2 cut(s)	945, 1755
BlpI	GCTNAGC	2 cut(s)	1722, 2175
BlsI	GCNGC	2 cut(s)	946, 1756
Bme1390I	CCNGG	6 cut(s)	406, 542, 1429, 1581, 1808, 2185
Bme18I	GGWCC	7 cut(s)	100, 207, 429, 1553, 1748, 1764, 2187
BmeT110I	CYCGRG	1 cut(s)	1572
BmgT120I	GGNCC	7 cut(s)	100, 207, 429, 1553, 1748, 1764, 2187
BmiI	GGNNCC	8 cut(s)	101, 209, 585, 1426, 1554, 2067, 2188, 2319
BmrFI	CCNGG	6 cut(s)	406, 542, 1429, 1581, 1808, 2185
BmsI	GCATC	6 cut(s)	574, 699, 1182, 1265, 1677, 1900
BpiI	GAAGAC	2 cut(s)	232, 788
BplI	GAGNNNNNCTC	4 cut(s)	344, 376, 2139, 2171
Bpu10I	CCTNAGC	2 cut(s)	104, 1894
Bpu1102I	GCTNAGC	2 cut(s)	1722, 2175
BpuEI	CTTGAG	5 cut(s)	29, 443, 796, 2297, 2357
BpuMI	CCSGG	2 cut(s)	1581, 2185
BsaBI	GATNNNNATC	2 cut(s)	1172, 1872
BsaI	GGTCTC	3 cut(s)	158, 364, 1595
BsaJI	CCNNGG	6 cut(s)	82, 558, 1124, 1308, 1548, 1579
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 1562, 1586
Bse1I	ACTGG	5 cut(s)	665, 728, 1022, 1105, 2324
Bse3DI	GCAATG	2 cut(s)	852, 1209
Bse8I	GATNNNNATC	2 cut(s)	1172, 1872
BseBI	CCWGG	4 cut(s)	406, 542, 1429, 1808
BseDI	CCNNGG	6 cut(s)	82, 558, 1124, 1308, 1548, 1579
BseGI	GGATG	8 cut(s)	803, 807, 1197, 1317, 1668, 1816, 1857, 2308
BseJI	GATNNNNATC	2 cut(s)	1172, 1872
BseLI	CCNNNNNNNGG	3 cut(s)	24, 1562, 1586
BseMI	GCAATG	2 cut(s)	852, 1209
BseMII	CTCAG	9 cut(s)	95, 1011, 1170, 1410, 1713, 1908, 2018, 2126, 2189
BseNI	ACTGG	5 cut(s)	665, 728, 1022, 1105, 2324
BseRI	GAGGAG	2 cut(s)	2012, 2296
BseXI	GCAGC	2 cut(s)	931, 1766
BseYI	CCCAGC	1 cut(s)	1830
Bsh1236I	CGCG	2 cut(s)	1419, 2192
BshFI	GGCC	6 cut(s)	17, 540, 864, 1021, 1164, 2255
BshNI	GGYRCC	3 cut(s)	1424, 2065, 2317
BsiHKAI	GWGCWC	4 cut(s)	381, 504, 700, 2157
BsiHKCI	CYCGRG	1 cut(s)	1572
BsiSI	CCGG	3 cut(s)	386, 1581, 2184
BslFI	GGGAC	7 cut(s)	41, 113, 206, 986, 1562, 1682, 2200
BslI	CCNNNNNNNGG	3 cut(s)	24, 1562, 1586
BsmAI	GTCTC	8 cut(s)	158, 364, 810, 1000, 1227, 1595, 1994, 2115
BsmFI	GGGAC	7 cut(s)	41, 113, 206, 986, 1562, 1682, 2200
BsmI	GAATGC	3 cut(s)	137, 1258, 1617
BsnI	GGCC	6 cut(s)	17, 540, 864, 1021, 1164, 2255
Bso31I	GGTCTC	3 cut(s)	158, 364, 1595
BsoBI	CYCGRG	1 cut(s)	1572
Bsp1286I	GDGCHC	4 cut(s)	381, 504, 700, 2157
Bsp143I	GATC	9 cut(s)	4, 856, 981, 1182, 1200, 1314, 1603, 2101, 2161
Bsp1720I	GCTNAGC	2 cut(s)	1722, 2175
BspACI	CCGC	8 cut(s)	356, 510, 1417, 1636, 1656, 1666, 2190, 2300
BspANI	GGCC	6 cut(s)	17, 540, 864, 1021, 1164, 2255
BspCNI	CTCAG	9 cut(s)	96, 1010, 1171, 1409, 1714, 1907, 2017, 2125, 2188
BspFNI	CGCG	2 cut(s)	1419, 2192
BspHI	TCATGA	2 cut(s)	1458, 2277
BspLI	GGNNCC	8 cut(s)	101, 209, 585, 1426, 1554, 2067, 2188, 2319
BspMAI	CTGCAG	3 cut(s)	532, 1756, 2294
BspPI	GGATC	2 cut(s)	12, 1195
BspQI	GCTCTTC	1 cut(s)	2145
BspT107I	GGYRCC	3 cut(s)	1424, 2065, 2317
BspTNI	GGTCTC	3 cut(s)	158, 364, 1595
BsrDI	GCAATG	2 cut(s)	852, 1209
BsrI	ACTGG	5 cut(s)	665, 728, 1022, 1105, 2324
BssECI	CCNNGG	6 cut(s)	82, 558, 1124, 1308, 1548, 1579
BssMI	GATC	9 cut(s)	4, 856, 981, 1182, 1200, 1314, 1603, 2101, 2161
BssSI	CACGAG	1 cut(s)	1592
BssT1I	CCWWGG	5 cut(s)	82, 558, 1124, 1308, 1548
Bst2BI	CACGAG	1 cut(s)	1592
Bst2UI	CCWGG	4 cut(s)	406, 542, 1429, 1808
Bst4CI	ACNGT	4 cut(s)	338, 1940, 1963, 2035
Bst6I	CTCTTC	5 cut(s)	168, 1370, 2074, 2145, 2240
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstC8I	GCNNGC	4 cut(s)	312, 345, 381, 2181
BstF5I	GGATG	8 cut(s)	803, 807, 1197, 1317, 1668, 1816, 1857, 2308
BstFNI	CGCG	2 cut(s)	1419, 2192
BstH2I	RGCGCY	1 cut(s)	2312
BstHHI	GCGC	2 cut(s)	137, 2311
BstKTI	GATC	9 cut(s)	7, 859, 984, 1185, 1203, 1317, 1606, 2104, 2164
BstMAI	GTCTC	8 cut(s)	158, 364, 810, 1000, 1227, 1595, 1994, 2115
BstMBI	GATC	9 cut(s)	4, 856, 981, 1182, 1200, 1314, 1603, 2101, 2161
BstMWI	GCNNNNNNNGC	8 cut(s)	353, 851, 1043, 1274, 2180, 2189, 2306, 2317
BstNI	CCWGG	4 cut(s)	406, 542, 1429, 1808
BstNSI	RCATGY	6 cut(s)	314, 737, 766, 1299, 2143, 2216
BstSCI	CCNGG	6 cut(s)	404, 540, 1427, 1579, 1806, 2183
BstSFI	CTRYAG	5 cut(s)	528, 1752, 1768, 1939, 2290
BstUI	CGCG	2 cut(s)	1419, 2192
BstV1I	GCAGC	2 cut(s)	931, 1766
BstV2I	GAAGAC	2 cut(s)	232, 788
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	2 cut(s)	83, 1112
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	2 cut(s)	1784, 2261
BsuRI	GGCC	6 cut(s)	17, 540, 864, 1021, 1164, 2255
BtgZI	GCGATG	1 cut(s)	1030
BtsCI	GGATG	8 cut(s)	803, 807, 1197, 1317, 1668, 1816, 1857, 2308
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	8 cut(s)	537, 672, 700, 721, 1081, 1599, 1968, 2331
Cac8I	GCNNGC	4 cut(s)	312, 345, 381, 2181
CaiI	CAGNNNCTG	2 cut(s)	536, 1700
CciI	TCATGA	2 cut(s)	1458, 2277
CfoI	GCGC	2 cut(s)	137, 2311
Cfr13I	GGNCC	7 cut(s)	100, 207, 429, 1553, 1748, 1764, 2187
CseI	GACGC	1 cut(s)	1902
Csp6I	GTAC	6 cut(s)	188, 279, 419, 1390, 1501, 1979
CviQI	GTAC	6 cut(s)	188, 279, 419, 1390, 1501, 1979
DpnI	GATC	9 cut(s)	6, 858, 983, 1184, 1202, 1316, 1605, 2103, 2163
DpnII	GATC	9 cut(s)	4, 856, 981, 1182, 1200, 1314, 1603, 2101, 2161
EaeI	YGGCCR	4 cut(s)	862, 1019, 1162, 2253
Eam1104I	CTCTTC	5 cut(s)	168, 1370, 2074, 2145, 2240
EarI	CTCTTC	5 cut(s)	168, 1370, 2074, 2145, 2240
EciI	GGCGGA	1 cut(s)	2315
Ecl136II	GAGCTC	1 cut(s)	2155
Eco130I	CCWWGG	5 cut(s)	82, 558, 1124, 1308, 1548
Eco24I	GRGCYC	1 cut(s)	2157
Eco31I	GGTCTC	3 cut(s)	158, 364, 1595
Eco47I	GGWCC	7 cut(s)	100, 207, 429, 1553, 1748, 1764, 2187
Eco53kI	GAGCTC	1 cut(s)	2155
Eco88I	CYCGRG	1 cut(s)	1572
EcoICRI	GAGCTC	1 cut(s)	2155
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	4 cut(s)	404, 540, 1427, 1806
EcoT14I	CCWWGG	5 cut(s)	82, 558, 1124, 1308, 1548
EcoT22I	ATGCAT	2 cut(s)	692, 1258
EcoT38I	GRGCYC	1 cut(s)	2157
ErhI	CCWWGG	5 cut(s)	82, 558, 1124, 1308, 1548
FalI	AAGNNNNNCTT	6 cut(s)	224, 256, 309, 341, 405, 437
FaqI	GGGAC	7 cut(s)	41, 113, 206, 986, 1562, 1682, 2200
FauI	CCCGC	3 cut(s)	517, 1643, 1663
FbaI	TGATCA	2 cut(s)	1314, 2101
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	945, 1755
FokI	GGATG	8 cut(s)	810, 814, 1204, 1304, 1655, 1823, 1844, 2315
FriOI	GRGCYC	1 cut(s)	2157
Fsp4HI	GCNGC	2 cut(s)	945, 1755
FspBI	CTAG	9 cut(s)	218, 809, 1034, 1286, 1346, 1673, 1733, 1835, 1890
GlaI	GCGC	2 cut(s)	136, 2310
GluI	GCNGC	2 cut(s)	945, 1755
GsaI	CCCAGC	1 cut(s)	1834
HaeII	RGCGCY	1 cut(s)	2312
HaeIII	GGCC	6 cut(s)	17, 540, 864, 1021, 1164, 2255
HapII	CCGG	3 cut(s)	386, 1581, 2184
HgaI	GACGC	1 cut(s)	1902
HhaI	GCGC	2 cut(s)	137, 2311
Hin6I	GCGC	2 cut(s)	135, 2309
HinP1I	GCGC	2 cut(s)	135, 2309
HincII	GTYRAC	1 cut(s)	1816
HindII	GTYRAC	1 cut(s)	1816
HindIII	AAGCTT	1 cut(s)	1558
HinfI	GANTC	8 cut(s)	651, 727, 1227, 1575, 1817, 1826, 2002, 2108
HpaII	CCGG	3 cut(s)	386, 1581, 2184
HphI	GGTGA	6 cut(s)	503, 956, 1324, 1399, 1600, 1796
Hpy166II	GTNNAC	7 cut(s)	127, 188, 1141, 1599, 1804, 1816, 1979
Hpy188I	TCNGA	7 cut(s)	163, 588, 841, 1150, 1232, 1852, 2267
Hpy188III	TCNNGA	8 cut(s)	8, 205, 775, 1459, 1495, 2105, 2278, 2336
Hpy8I	GTNNAC	7 cut(s)	127, 188, 1141, 1599, 1804, 1816, 1979
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	4 cut(s)	7, 335, 385, 1523
HpyCH4III	ACNGT	4 cut(s)	338, 1940, 1963, 2035
HpyF10VI	GCNNNNNNNGC	8 cut(s)	353, 851, 1043, 1274, 2180, 2189, 2306, 2317
HspAI	GCGC	2 cut(s)	135, 2309
Ksp22I	TGATCA	2 cut(s)	1314, 2101
Kzo9I	GATC	9 cut(s)	4, 856, 981, 1182, 1200, 1314, 1603, 2101, 2161
LguI	GCTCTTC	1 cut(s)	2145
LmnI	GCTCC	3 cut(s)	376, 562, 2160
Lsp1109I	GCAGC	2 cut(s)	931, 1766
LweI	GCATC	6 cut(s)	574, 699, 1182, 1265, 1677, 1900
MaeI	CTAG	9 cut(s)	218, 809, 1034, 1286, 1346, 1673, 1733, 1835, 1890
MaeIII	GTNAC	8 cut(s)	1107, 1216, 1288, 1642, 1914, 1934, 2044, 2142
MalI	GATC	9 cut(s)	6, 858, 983, 1184, 1202, 1316, 1605, 2103, 2163
MboI	GATC	9 cut(s)	4, 856, 981, 1182, 1200, 1314, 1603, 2101, 2161
MfeI	CAATTG	3 cut(s)	1186, 1377, 2094
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	4 cut(s)	381, 504, 700, 2157
MlsI	TGGCCA	2 cut(s)	1021, 2255
MluNI	TGGCCA	2 cut(s)	1021, 2255
MlyI	GAGTC	4 cut(s)	1584, 1811, 1996, 2117
MmeI	TCCRAC	1 cut(s)	628
Mox20I	TGGCCA	2 cut(s)	1021, 2255
Mph1103I	ATGCAT	2 cut(s)	692, 1258
MroXI	GAANNNNTTC	2 cut(s)	150, 1084
MscI	TGGCCA	2 cut(s)	1021, 2255
MseI	TTAA	2 cut(s)	2217, 2259
MslI	CAYNNNNRTG	5 cut(s)	301, 479, 573, 1809, 2211
Msp20I	TGGCCA	2 cut(s)	1021, 2255
MspI	CCGG	3 cut(s)	386, 1581, 2184
MspR9I	CCNGG	6 cut(s)	406, 542, 1429, 1581, 1808, 2185
MunI	CAATTG	3 cut(s)	1186, 1377, 2094
Mva1269I	GAATGC	3 cut(s)	137, 1258, 1617
MvaI	CCWGG	4 cut(s)	406, 542, 1429, 1808
MvnI	CGCG	2 cut(s)	1419, 2192
MwoI	GCNNNNNNNGC	8 cut(s)	353, 851, 1043, 1274, 2180, 2189, 2306, 2317
NciI	CCSGG	2 cut(s)	1581, 2185
NdeII	GATC	9 cut(s)	4, 856, 981, 1182, 1200, 1314, 1603, 2101, 2161
NlaIV	GGNNCC	8 cut(s)	101, 209, 585, 1426, 1554, 2067, 2188, 2319
NmeAIII	GCCGAG	1 cut(s)	840
NmuCI	GTSAC	5 cut(s)	1107, 1288, 1914, 1934, 2044
NsiI	ATGCAT	2 cut(s)	692, 1258
NspI	RCATGY	6 cut(s)	314, 737, 766, 1299, 2143, 2216
PaeI	GCATGC	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	1572
PagI	TCATGA	2 cut(s)	1458, 2277
PciI	ACATGT	3 cut(s)	762, 2139, 2212
PciSI	GCTCTTC	1 cut(s)	2145
PctI	GAATGC	3 cut(s)	137, 1258, 1617
PdmI	GAANNNNTTC	2 cut(s)	150, 1084
PfeI	GAWTC	4 cut(s)	651, 727, 1227, 1826
PflMI	CCANNNNNTGG	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	946, 1756
PleI	GAGTC	4 cut(s)	1583, 1811, 1996, 2116
PpsI	GAGTC	4 cut(s)	1583, 1811, 1996, 2116
PpuMI	RGGWCCY	1 cut(s)	100
PscI	ACATGT	3 cut(s)	762, 2139, 2212
PsiI	TTATAA	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	2157
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	4 cut(s)	404, 540, 1427, 1806
PspFI	CCCAGC	1 cut(s)	1830
PspGI	CCWGG	4 cut(s)	404, 540, 1427, 1806
PspN4I	GGNNCC	8 cut(s)	101, 209, 585, 1426, 1554, 2067, 2188, 2319
PspPI	GGNCC	7 cut(s)	100, 207, 429, 1553, 1748, 1764, 2187
PspPPI	RGGWCCY	1 cut(s)	100
PspXI	VCTCGAGB	1 cut(s)	1572
PstI	CTGCAG	3 cut(s)	532, 1756, 2294
PstNI	CAGNNNCTG	2 cut(s)	536, 1700
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	6 cut(s)	189, 280, 420, 1391, 1502, 1980
RsaNI	GTAC	6 cut(s)	188, 279, 419, 1390, 1501, 1979
RseI	CAYNNNNRTG	5 cut(s)	301, 479, 573, 1809, 2211
SacI	GAGCTC	1 cut(s)	2157
SapI	GCTCTTC	1 cut(s)	2145
SaqAI	TTAA	2 cut(s)	2217, 2259
SatI	GCNGC	2 cut(s)	945, 1755
Sau3AI	GATC	9 cut(s)	4, 856, 981, 1182, 1200, 1314, 1603, 2101, 2161
Sau96I	GGNCC	7 cut(s)	100, 207, 429, 1553, 1748, 1764, 2187
SchI	GAGTC	4 cut(s)	1584, 1811, 1996, 2117
ScrFI	CCNGG	6 cut(s)	406, 542, 1429, 1581, 1808, 2185
SduI	GDGCHC	4 cut(s)	381, 504, 700, 2157
SfaNI	GCATC	6 cut(s)	574, 699, 1182, 1265, 1677, 1900
SfcI	CTRYAG	5 cut(s)	528, 1752, 1768, 1939, 2290
Sfr274I	CTCGAG	1 cut(s)	1572
SinI	GGWCC	7 cut(s)	100, 207, 429, 1553, 1748, 1764, 2187
SlaI	CTCGAG	1 cut(s)	1572
SmiMI	CAYNNNNRTG	5 cut(s)	301, 479, 573, 1809, 2211
SmlI	CTYRAG	6 cut(s)	8, 422, 775, 1572, 2312, 2336
SmoI	CTYRAG	6 cut(s)	8, 422, 775, 1572, 2312, 2336
SphI	GCATGC	1 cut(s)	314
SsiI	CCGC	8 cut(s)	356, 510, 1417, 1636, 1656, 1666, 2190, 2300
SspI	AATATT	1 cut(s)	819
SspMI	CTAG	9 cut(s)	218, 809, 1034, 1286, 1346, 1673, 1733, 1835, 1890
SstI	GAGCTC	1 cut(s)	2157
StyD4I	CCNGG	6 cut(s)	404, 540, 1427, 1579, 1806, 2183
StyI	CCWWGG	5 cut(s)	82, 558, 1124, 1308, 1548
TaaI	ACNGT	4 cut(s)	338, 1940, 1963, 2035
TaqI	TCGA	3 cut(s)	643, 1573, 1876
TaqII	GACCGA	1 cut(s)	1752
TatI	WGTACW	2 cut(s)	187, 1389
TfiI	GAWTC	4 cut(s)	651, 727, 1227, 1826
Tru1I	TTAA	2 cut(s)	2217, 2259
Tru9I	TTAA	2 cut(s)	2217, 2259
TscAI	CASTG	8 cut(s)	537, 672, 700, 728, 1081, 1606, 1968, 2331
TseFI	GTSAC	5 cut(s)	1107, 1288, 1914, 1934, 2044
TseI	GCWGC	2 cut(s)	944, 1754
Tsp45I	GTSAC	5 cut(s)	1107, 1288, 1914, 1934, 2044
TspDTI	ATGAA	8 cut(s)	186, 232, 589, 1518, 1846, 2184, 2258, 2266
TspGWI	ACGGA	2 cut(s)	1850, 1916
TspRI	CASTG	8 cut(s)	537, 672, 700, 728, 1081, 1606, 1968, 2331
Van91I	CCANNNNNTGG	1 cut(s)	24
VpaK11BI	GGWCC	7 cut(s)	100, 207, 429, 1553, 1748, 1764, 2187
XceI	RCATGY	6 cut(s)	314, 737, 766, 1299, 2143, 2216
XhoI	CTCGAG	1 cut(s)	1572
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	2 cut(s)	150, 1084
XspI	CTAG	9 cut(s)	218, 809, 1034, 1286, 1346, 1673, 1733, 1835, 1890
Zsp2I	ATGCAT	2 cut(s)	692, 1258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.