Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000970

Physical Location & Seq

Genomic Coordinates Reverse (-)

25203442 .. 25206656

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1142500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGGAGAAGCCGCTGCTCCACACAGCCGGTGACGGTGACGTTGAGTTGAGCTATAAGCCACTTCTTTATGAAGGCACCAATGAAGACTATGCACCGGTGAGGAGCTTTGATGCACTACGGCGTATGTTTTGGATAGAGACAGTGAAGCTGTGGCAAATAGCCGGTTCTACTGTGATCACTATGGTGTGTATGTATGGAAATACCGCAGTTGTTGTGCTCTTTGCTGGTCATCTCGGAACTATTGAGCTCTCTGCCATCTCCATTTCGCTGACCGTCATCTCCATATTCTCTTTTGGAGTCATGCTTGGGATGGGGAGTGCTCTGGAGACCCTGTGTGGACAAGCATTTGGTGCTGGACAAGTTCATATGCTTGGGATCTACATGCAGCGCTCATGTATAATCCTATTTGTAACCAACATCTTCCTCTTGCCGACCTACATCTTTGCCACGCCGATTCTAAAGTGGTTGGGCCAAGAAGACGACATAGCTAATCTAGCCGGAAAATTCTCACTCCAAATAATCCCCCATCTGTTCTCACTTGCTGTAATTTTCCCAACTCAAAAGTTCCTCCAGTCTCAGAGGAAGGTGAAGGTGCTGGCATGGATTGCTGTTTTGGCTTTGATCGTAGAGATAGGAATGCTAGGGCTCTTCATCTATGTGTTCGATTGGGGCACAACGGGGGCAGCTGTGGCATTTAACGTCACGAGATGGGGGATGGCAATTACTCAAGTTGTGTATATTATGGGTTGGTGTAGGGAAGGTTGGACTGGATTTTCATGGCTGGCATTCAAGGAGATTTGGGCATTTGTAAGACTTTCCCTTGCCTCTGCTGTGATGCTCTGCCTGGAAATTTGGTACATGATGAGTATTATCATTCTCACAGGACATCTTTCTAATGCAGTTATAGCCGTTGGCTCTCTTTCCATCTGCATGAACATCAATGGATGGGAAGGAATCTTGTTCGTTGGAATAAACGCCGCAATAAGTGTTCGTGTCTCTAATGAGCTTGGGTTAGGGCATCCCAGAGCAGCCAAATACTCTGTTTATGTGACAATATTTCAATCTCTTATACTTGGGATTTTTTTCATGGTTCTTATTTTAATAACTAGAGACTATTTCGCCATACTTTATACAAGTGACAAGGAGCTGCAACAAGCGGTCGCTAAACTAGCATACCTTCTTGGTATAACTATGTTGCTTAATAGTGTCCAACCAGTAATATCAGGTGTTGCAATTGGAGGTGGATGGCAGTCAATGGTAGCTTATATAAACTTGGGTTGTTACTACATTTTTGGACTTCCTCTTGGATACCTTCTATGCCATGTTGCAAATTTGGGAGTCATGGGCCTTTGGGGAGGCATGATATGTGGAACCGCTCTCCAAACCATACTTCTGCTAATTATACTTTACAAAACCAACTGGAACACAGAGGTGGAGCAAGCAACAAATCGCGTCCGGAAGTGGGGTGGGCAAAACATGAAAACTGAGAATGTAGCTGAAATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

503

Amino Acids

55.45

Weight (kDa)

7.02

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	58 - 211	2.3e-28	MatE
MatE	PF01554	276 - 438	1.8e-25	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25640 AT4G25640 AT4G25640
fragaria_vesca	FvH4_7g30023 FvH4_7g30023 FvH4_7g30023 FvH4_7g30023 FvH4_7g30080 FvH4_7g30080 FvH4_7g30080
malus_domestica	MD01G1142500.v1.1 MD01G1206300.v1.1 MD01G1206500.v1.1 MD01G1206600.v1.1 MD01G1206700.v1.1 MD07G1277000.v1.1 MD07G1277200.v1.1 MD07G1277300.v1.1
prunus_persica	Prupe.2G037200_v2.0.a1 Prupe.2G298900_v2.0.a1 Prupe.2G299100_v2.0.a1 Prupe.2G299200_v2.0.a1 Prupe.2G299200_v2.0.a1 Prupe.2G299300_v2.0.a1
pyrus_communis	pycom01g16260 pycom01g21590 pycom01g21620 pycom01g21640 pycom01g21650 pycom01g21660 pycom01g21670 pycom07g25180 pycom07g25230
rosa_chinensis	RchiOBHm_Chr1g0378001 RchiOBHm_Chr1g0378071
rosa_laevigata	RLG00000026475 RLG00000026479
rosa_multiflora	Rmu_sc0001465.1_g000016 Rmu_sc0002068.1_g000003 Rmu_sc0005268.1_g000004 Rmu_sc0005268.1_g000009
rosa_roxburghii	Rroxscaffold_156G00440330 Rroxscaffold_156G00440380 Rroxscaffold_156G00440420 Rroxscaffold_4G00280810 Rroxscaffold_4G00280850 Rroxscaffold_4G00300720
rosa_rugosa	Rorug01G0406000 Rorug01G0406100
rosa_samantha	Rh1AG423700 Rh1AG425200 Rh1BG384900 Rh1CG397900 Rh1CG398900 Rh1DG415400 Rh1DG416100 Rh3AG010400 Rh3BG010100 Rh3CG009800 Rh4CG451900
rosa_wichuraiana	Rw0G004090 Rw1G037310 Rw1G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	1376
AccII	CGCG	1 cut(s)	1452
AccIII	TCCGGA	1 cut(s)	1455
AciI	CCGC	5 cut(s)	11, 204, 978, 1157, 1374
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	3 cut(s)	503, 849, 1330
AfaI	GTAC	1 cut(s)	857
AfeI	AGCGCT	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	1462
AgeI	ACCGGT	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	790, 1061
AjnI	CCWGG	1 cut(s)	843
AjuI	GAANNNNNNNTTGG	2 cut(s)	1374, 1406
AleI	CACNNNNGTG	2 cut(s)	182, 1430
Alw21I	GWGCWC	3 cut(s)	219, 249, 322
Alw26I	GTCTC	5 cut(s)	131, 320, 579, 1000, 1104
AlwI	GGATC	1 cut(s)	383
Aor13HI	TCCGGA	1 cut(s)	1455
Aor51HI	AGCGCT	1 cut(s)	389
AoxI	GGCC	2 cut(s)	469, 1345
ApeKI	GCWGC	5 cut(s)	13, 385, 683, 1028, 1147
ApoI	RAATTY	3 cut(s)	503, 849, 1330
AsiGI	ACCGGT	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	469, 1345
AsuHPI	GGTGA	4 cut(s)	41, 47, 109, 598
BaeGI	GKGCMC	1 cut(s)	674
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	2 cut(s)	249, 648
BauI	CACGAG	1 cut(s)	703
BbsI	GAAGAC	2 cut(s)	90, 483
Bbv12I	GWGCWC	3 cut(s)	219, 249, 322
BbvI	GCAGC	4 cut(s)	397, 695, 1040, 1134
BccI	CCATC	8 cut(s)	263, 304, 534, 702, 709, 932, 939, 1239
BceAI	ACGGC	2 cut(s)	134, 893
BciT130I	CCWGG	1 cut(s)	845
BciVI	GTATCC	1 cut(s)	1301
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	5 cut(s)	131, 320, 579, 1000, 1104
BfaI	CTAG	4 cut(s)	494, 641, 1107, 1169
BfoI	RGCGCY	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	1301
BisI	GCNGC	7 cut(s)	11, 14, 386, 684, 978, 1029, 1148
BlsI	GCNGC	7 cut(s)	12, 15, 387, 685, 979, 1030, 1149
Bme1390I	CCNGG	1 cut(s)	845
BmgT120I	GGNCC	2 cut(s)	469, 1345
BmiI	GGNNCC	2 cut(s)	76, 1372
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	3 cut(s)	100, 825, 1027
BpiI	GAAGAC	2 cut(s)	90, 483
BpmI	CTGGAG	2 cut(s)	344, 554
BpuEI	CTTGAG	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	320
BsaWI	WCCGGW	2 cut(s)	94, 1455
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	1462
Bse118I	RCCGGY	3 cut(s)	26, 94, 161
Bse1I	ACTGG	4 cut(s)	571, 772, 1214, 1424
BseAI	TCCGGA	1 cut(s)	1455
BseBI	CCWGG	1 cut(s)	845
BseGI	GGATG	5 cut(s)	315, 720, 950, 1018, 1250
BseLI	CCNNNNNNNGG	1 cut(s)	1462
BseMII	CTCAG	2 cut(s)	590, 1476
BseNI	ACTGG	4 cut(s)	571, 772, 1214, 1424
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	674
BseXI	GCAGC	4 cut(s)	397, 695, 1040, 1134
Bsh1236I	CGCG	1 cut(s)	1452
Bsh1285I	CGRYCG	1 cut(s)	1161
BshFI	GGCC	2 cut(s)	471, 1347
BshNI	GGYRCC	1 cut(s)	74
BshTI	ACCGGT	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	1161
BsiHKAI	GWGCWC	3 cut(s)	219, 249, 322
BsiSI	CCGG	5 cut(s)	27, 95, 162, 498, 1456
BslI	CCNNNNNNNGG	1 cut(s)	1462
BsmAI	GTCTC	5 cut(s)	131, 320, 579, 1000, 1104
BsmI	GAATGC	2 cut(s)	642, 785
BsnI	GGCC	2 cut(s)	471, 1347
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	5 cut(s)	219, 249, 322, 648, 674
Bsp13I	TCCGGA	1 cut(s)	1455
Bsp143I	GATC	3 cut(s)	174, 375, 621
BspACI	CCGC	5 cut(s)	11, 204, 978, 1157, 1374
BspANI	GGCC	2 cut(s)	471, 1347
BspCNI	CTCAG	2 cut(s)	589, 1477
BspEI	TCCGGA	1 cut(s)	1455
BspFNI	CGCG	1 cut(s)	1452
BspLI	GGNNCC	2 cut(s)	76, 1372
BspPI	GGATC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	1376
BsrFI	RCCGGY	3 cut(s)	26, 94, 161
BsrI	ACTGG	4 cut(s)	571, 772, 1214, 1424
BssAI	RCCGGY	3 cut(s)	26, 94, 161
BssMI	GATC	3 cut(s)	174, 375, 621
BssSI	CACGAG	1 cut(s)	703
Bst2BI	CACGAG	1 cut(s)	703
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	4 cut(s)	35, 142, 172, 274
Bst6I	CTCTTC	1 cut(s)	653
BstAPI	GCANNNNNTGC	2 cut(s)	350, 605
BstC8I	GCNNGC	3 cut(s)	597, 783, 1440
BstDEI	CTNAG	2 cut(s)	576, 1485
BstF5I	GGATG	5 cut(s)	315, 720, 950, 1018, 1250
BstFNI	CGCG	1 cut(s)	1452
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	3 cut(s)	177, 378, 624
BstMAI	GTCTC	5 cut(s)	131, 320, 579, 1000, 1104
BstMBI	GATC	3 cut(s)	174, 375, 621
BstMCI	CGRYCG	1 cut(s)	1161
BstMWI	GCNNNNNNNGC	7 cut(s)	350, 494, 605, 614, 689, 905, 1169
BstNI	CCWGG	1 cut(s)	845
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	843
BstSLI	GKGCMC	1 cut(s)	674
BstUI	CGCG	1 cut(s)	1452
BstV1I	GCAGC	4 cut(s)	397, 695, 1040, 1134
BstV2I	GAAGAC	2 cut(s)	90, 483
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	1301
BsuRI	GGCC	2 cut(s)	471, 1347
BtsCI	GGATG	5 cut(s)	315, 720, 950, 1018, 1250
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	597, 783, 1440
CfoI	GCGC	1 cut(s)	390
Cfr10I	RCCGGY	3 cut(s)	26, 94, 161
Cfr13I	GGNCC	2 cut(s)	469, 1345
CseI	GACGC	1 cut(s)	1441
Csp6I	GTAC	1 cut(s)	856
CspAI	ACCGGT	1 cut(s)	94
CviQI	GTAC	1 cut(s)	856
DdeI	CTNAG	2 cut(s)	576, 1485
DpnI	GATC	3 cut(s)	176, 377, 623
DpnII	GATC	3 cut(s)	174, 375, 621
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	2 cut(s)	249, 648
Eco31I	GGTCTC	1 cut(s)	320
Eco47III	AGCGCT	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	843
EcoT38I	GRGCYC	2 cut(s)	249, 648
FauNDI	CATATG	1 cut(s)	366
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	7 cut(s)	11, 14, 386, 684, 978, 1029, 1148
FokI	GGATG	5 cut(s)	322, 727, 957, 1005, 1257
FriOI	GRGCYC	2 cut(s)	249, 648
Fsp4HI	GCNGC	7 cut(s)	11, 14, 386, 684, 978, 1029, 1148
FspBI	CTAG	4 cut(s)	494, 641, 1107, 1169
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	7 cut(s)	11, 14, 386, 684, 978, 1029, 1148
GsuI	CTGGAG	2 cut(s)	344, 554
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	2 cut(s)	471, 1347
HapII	CCGG	5 cut(s)	27, 95, 162, 498, 1456
HgaI	GACGC	1 cut(s)	1441
HhaI	GCGC	1 cut(s)	390
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HinfI	GANTC	4 cut(s)	297, 454, 954, 1338
HpaII	CCGG	5 cut(s)	27, 95, 162, 498, 1456
HphI	GGTGA	4 cut(s)	41, 47, 109, 598
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	2 cut(s)	236, 579
Hpy188III	TCNNGA	3 cut(s)	323, 703, 1456
Hpy8I	GTNNAC	1 cut(s)	338
HpyAV	CCTTC	7 cut(s)	65, 577, 583, 752, 944, 1187, 1322
HpyCH4III	ACNGT	4 cut(s)	35, 142, 172, 274
HpyCH4IV	ACGT	2 cut(s)	39, 699
HpyCH4V	TGCA	8 cut(s)	92, 113, 385, 899, 930, 1150, 1232, 1328
HpyF10VI	GCNNNNNNNGC	7 cut(s)	350, 494, 605, 614, 689, 905, 1169
HpyF3I	CTNAG	2 cut(s)	576, 1485
HpySE526I	ACGT	2 cut(s)	39, 699
HspAI	GCGC	1 cut(s)	388
Kpn2I	TCCGGA	1 cut(s)	1455
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	174, 375, 621
LguI	GCTCTTC	1 cut(s)	653
LmnI	GCTCC	4 cut(s)	21, 102, 1144, 1435
Lsp1109I	GCAGC	4 cut(s)	397, 695, 1040, 1134
LweI	GCATC	3 cut(s)	100, 825, 1027
MaeI	CTAG	4 cut(s)	494, 641, 1107, 1169
MaeII	ACGT	2 cut(s)	39, 699
MaeIII	GTNAC	7 cut(s)	29, 35, 409, 700, 1048, 1136, 1280
MalI	GATC	3 cut(s)	176, 377, 623
MbiI	CCGCTC	1 cut(s)	1376
MboI	GATC	3 cut(s)	174, 375, 621
MboII	GAAGA	4 cut(s)	95, 412, 488, 640
MfeI	CAATTG	1 cut(s)	1233
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	5 cut(s)	219, 249, 322, 648, 674
MluCI	AATT	8 cut(s)	503, 546, 720, 849, 1233, 1330, 1398, 1500
MlyI	GAGTC	2 cut(s)	306, 1347
MmeI	TCCRAC	3 cut(s)	743, 946, 1234
MnlI	CCTC	9 cut(s)	93, 434, 573, 578, 835, 1232, 1311, 1349, 1423
MroI	TCCGGA	1 cut(s)	1455
MseI	TTAA	3 cut(s)	696, 1100, 1200
MslI	CAYNNNNRTG	4 cut(s)	182, 656, 929, 1430
MspA1I	CMGCKG	2 cut(s)	13, 686
MspI	CCGG	5 cut(s)	27, 95, 162, 498, 1456
MspR9I	CCNGG	1 cut(s)	845
MunI	CAATTG	1 cut(s)	1233
Mva1269I	GAATGC	2 cut(s)	642, 785
MvaI	CCWGG	1 cut(s)	845
MvnI	CGCG	1 cut(s)	1452
MwoI	GCNNNNNNNGC	7 cut(s)	350, 494, 605, 614, 689, 905, 1169
NdeI	CATATG	1 cut(s)	366
NdeII	GATC	3 cut(s)	174, 375, 621
NlaIV	GGNNCC	2 cut(s)	76, 1372
NmuCI	GTSAC	5 cut(s)	29, 35, 700, 1048, 1136
NspI	RCATGY	1 cut(s)	385
OliI	CACNNNNGTG	2 cut(s)	182, 1430
PciSI	GCTCTTC	1 cut(s)	653
PctI	GAATGC	2 cut(s)	642, 785
PfeI	GAWTC	2 cut(s)	454, 954
PinAI	ACCGGT	1 cut(s)	94
PkrI	GCNGC	7 cut(s)	12, 15, 387, 685, 979, 1030, 1149
PleI	GAGTC	2 cut(s)	305, 1346
PpsI	GAGTC	2 cut(s)	305, 1346
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	843
PspN4I	GGNNCC	2 cut(s)	76, 1372
PspPI	GGNCC	2 cut(s)	469, 1345
PsuI	RGATCY	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	1 cut(s)	857
RsaNI	GTAC	1 cut(s)	856
RseI	CAYNNNNRTG	4 cut(s)	182, 656, 929, 1430
SacI	GAGCTC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	3 cut(s)	696, 1100, 1200
SatI	GCNGC	7 cut(s)	11, 14, 386, 684, 978, 1029, 1148
Sau3AI	GATC	3 cut(s)	174, 375, 621
Sau96I	GGNCC	2 cut(s)	469, 1345
SchI	GAGTC	2 cut(s)	306, 1347
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	5 cut(s)	219, 249, 322, 648, 674
SfaNI	GCATC	3 cut(s)	100, 825, 1027
SgrAI	CRCCGGYG	1 cut(s)	94
SmiMI	CAYNNNNRTG	4 cut(s)	182, 656, 929, 1430
SmlI	CTYRAG	1 cut(s)	726
SmoI	CTYRAG	1 cut(s)	726
Sse9I	AATT	8 cut(s)	503, 546, 720, 849, 1233, 1330, 1398, 1500
SsiI	CCGC	5 cut(s)	11, 204, 978, 1157, 1374
SspI	AATATT	1 cut(s)	1056
SspMI	CTAG	4 cut(s)	494, 641, 1107, 1169
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	843
TaaI	ACNGT	4 cut(s)	35, 142, 172, 274
TaiI	ACGT	2 cut(s)	42, 702
TaqI	TCGA	1 cut(s)	663
TasI	AATT	8 cut(s)	503, 546, 720, 849, 1233, 1330, 1398, 1500
TauI	GCSGC	2 cut(s)	13, 980
TfiI	GAWTC	2 cut(s)	454, 954
Tru1I	TTAA	3 cut(s)	696, 1100, 1200
Tru9I	TTAA	3 cut(s)	696, 1100, 1200
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	5 cut(s)	29, 35, 700, 1048, 1136
TseI	GCWGC	5 cut(s)	13, 385, 683, 1028, 1147
Tsp45I	GTSAC	5 cut(s)	29, 35, 700, 1048, 1136
TspDTI	ATGAA	8 cut(s)	84, 96, 353, 640, 765, 947, 1075, 1493
TspRI	CASTG	1 cut(s)	147
XapI	RAATTY	3 cut(s)	503, 849, 1330
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	4 cut(s)	494, 641, 1107, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.