Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000970

Physical Location & Seq

Genomic Coordinates Reverse (-)

30192656 .. 30194043

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1206600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCTCTGCCTGGAAATTTGGTACATGATGAGTATACTCATTCTCACGGGCGGTCTTTCTGATGCAGTTATAGCCGTTGGTTCTCTTTCAATTTGCATGAACATCAACGGGTGGGAAACAATGTTGTTCGTTGGAATAAATGCTGCAATAAGTGTTCGTGTCGCCAATGAGCTTGGATTAAGACGTCCTAGAACAGTCAAATACGCCGTTTATGTGACGGTATCTCAATCTCTCTTGCTTGGGCTTCTTTTCATGATTATTATTTTAATAACCAAAGACGATTTTGCCGTAATTTTCACAAGTGACAAGGAGCTGCAACAAGCGGTCGCTAAGCTTGCATACCTTCTTGGTATAACTATGGTGCTCAATAGTGTCCAACCAGTAATATCAGGTGTTGCAATTGGAGGTGGATGGCAGGCAACGGTTGCTTATATAAACTTGGGTTGTTACTACATTTTTGGACTTCCTCTTGGATACGTTCTTTGCAATGTTGCAAATTTAGGAGTCACGGTGGAGAAAGCAACAAATCGTGTCCGGAAGTGGGGAGGGCAGGACATCAAAACTGCCAACGGAGCTGAAAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

196

Amino Acids

21.04

Weight (kDa)

8.34

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	2 - 160	6.5e-25	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25640 AT4G25640 AT4G25640
fragaria_vesca	FvH4_7g30023 FvH4_7g30023 FvH4_7g30023 FvH4_7g30023 FvH4_7g30080 FvH4_7g30080 FvH4_7g30080
malus_domestica	MD01G1142500.v1.1 MD01G1206300.v1.1 MD01G1206500.v1.1 MD01G1206600.v1.1 MD01G1206700.v1.1 MD07G1277000.v1.1 MD07G1277200.v1.1 MD07G1277300.v1.1
prunus_persica	Prupe.2G037200_v2.0.a1 Prupe.2G298900_v2.0.a1 Prupe.2G299100_v2.0.a1 Prupe.2G299200_v2.0.a1 Prupe.2G299200_v2.0.a1 Prupe.2G299300_v2.0.a1
pyrus_communis	pycom01g16260 pycom01g21590 pycom01g21620 pycom01g21640 pycom01g21650 pycom01g21660 pycom01g21670 pycom07g25180 pycom07g25230
rosa_chinensis	RchiOBHm_Chr1g0378001 RchiOBHm_Chr1g0378071
rosa_laevigata	RLG00000026475 RLG00000026479
rosa_multiflora	Rmu_sc0001465.1_g000016 Rmu_sc0002068.1_g000003 Rmu_sc0005268.1_g000004 Rmu_sc0005268.1_g000009
rosa_roxburghii	Rroxscaffold_156G00440330 Rroxscaffold_156G00440380 Rroxscaffold_156G00440420 Rroxscaffold_4G00280810 Rroxscaffold_4G00280850 Rroxscaffold_4G00300720
rosa_rugosa	Rorug01G0406000 Rorug01G0406100
rosa_samantha	Rh1AG423700 Rh1AG425200 Rh1BG384900 Rh1CG397900 Rh1CG398900 Rh1DG415400 Rh1DG416100 Rh3AG010400 Rh3BG010100 Rh3CG009800 Rh4CG451900
rosa_wichuraiana	Rw0G004090 Rw1G037310 Rw1G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	34
AccIII	TCCGGA	1 cut(s)	534
AciI	CCGC	2 cut(s)	51, 323
AcsI	RAATTY	2 cut(s)	15, 496
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	2 cut(s)	23, 583
AfiI	CCNNNNNNNGG	1 cut(s)	541
AgsI	TTSAA	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	4 cut(s)	172, 313, 334, 575
AluI	AGCT	4 cut(s)	172, 313, 334, 575
Alw21I	GWGCWC	1 cut(s)	366
Aor13HI	TCCGGA	1 cut(s)	534
ApeKI	GCWGC	2 cut(s)	143, 313
ApoI	RAATTY	2 cut(s)	15, 496
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	130, 300
BccI	CCATC	1 cut(s)	405
BceAI	ACGGC	3 cut(s)	59, 191, 272
BciT130I	CCWGG	1 cut(s)	11
BciVI	GTATCC	1 cut(s)	467
BfaI	CTAG	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	2 cut(s)	144, 314
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	2 cut(s)	145, 315
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	52
Bpu1102I	GCTNAGC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	493
BseAI	TCCGGA	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMI	GCAATG	1 cut(s)	493
BseNI	ACTGG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	130, 300
Bsh1285I	CGRYCG	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp13I	TCCGGA	1 cut(s)	534
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	2 cut(s)	51, 323
BspEI	TCCGGA	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	380
BssNAI	GTATAC	1 cut(s)	35
BssNI	GRCGYC	1 cut(s)	184
Bst1107I	GTATAC	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	4 cut(s)	196, 220, 424, 511
BstACI	GRCGYC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	336, 417
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	416
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 335, 425, 572
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	130, 300
BstZ17I	GTATAC	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	467
BtsCI	GGATG	1 cut(s)	416
Cac8I	GCNNGC	2 cut(s)	336, 417
CciI	TCATGA	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	22, 582
CviAII	CATG	3 cut(s)	25, 97, 253
CviJI	RGCY	6 cut(s)	74, 172, 244, 313, 334, 575
CviKI_1	RGCY	6 cut(s)	74, 172, 244, 313, 334, 575
CviQI	GTAC	2 cut(s)	22, 582
DdeI	CTNAG	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	9
FaeI	CATG	3 cut(s)	28, 100, 256
FatI	CATG	3 cut(s)	24, 96, 252
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	144, 314
FokI	GGATG	1 cut(s)	423
Fsp4HI	GCNGC	2 cut(s)	144, 314
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	2 cut(s)	144, 314
HapII	CCGG	1 cut(s)	535
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	28, 100, 256
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	504
HpaII	CCGG	1 cut(s)	535
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	253, 535
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	4 cut(s)	196, 220, 424, 511
HpyCH4IV	ACGT	2 cut(s)	184, 477
HpyCH4V	TGCA	8 cut(s)	65, 96, 146, 316, 338, 398, 486, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 335, 425, 572
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	2 cut(s)	184, 477
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	28, 100, 256
Kpn2I	TCCGGA	1 cut(s)	534
LmnI	GCTCC	2 cut(s)	310, 572
LpnPI	CCDG	6 cut(s)	23, 375, 393, 401, 536, 548
Lsp1109I	GCAGC	2 cut(s)	130, 300
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	2 cut(s)	184, 477
MaeIII	GTNAC	4 cut(s)	214, 302, 446, 505
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	5 cut(s)	15, 90, 291, 399, 496
MlyI	GAGTC	1 cut(s)	513
MmeI	TCCRAC	2 cut(s)	112, 400
MnlI	CCTC	3 cut(s)	398, 477, 539
MroI	TCCGGA	1 cut(s)	534
MseI	TTAA	2 cut(s)	179, 266
MspI	CCGG	1 cut(s)	535
MspR9I	CCNGG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	71, 335, 425, 572
NlaIII	CATG	3 cut(s)	28, 100, 256
NmuCI	GTSAC	3 cut(s)	214, 302, 505
PagI	TCATGA	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	145, 315
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
RsaI	GTAC	2 cut(s)	23, 583
RsaNI	GTAC	2 cut(s)	22, 582
SaqAI	TTAA	2 cut(s)	179, 266
SatI	GCNGC	2 cut(s)	144, 314
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	1 cut(s)	513
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	9 cut(s)	174, 187, 315, 336, 345, 394, 409, 480, 577
SfaNI	GCATC	1 cut(s)	52
Sse9I	AATT	5 cut(s)	15, 90, 291, 399, 496
SsiI	CCGC	2 cut(s)	51, 323
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	4 cut(s)	196, 220, 424, 511
TaiI	ACGT	2 cut(s)	187, 480
TasI	AATT	5 cut(s)	15, 90, 291, 399, 496
TatI	WGTACW	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	179, 266
Tru9I	TTAA	2 cut(s)	179, 266
TseFI	GTSAC	3 cut(s)	214, 302, 505
TseI	GCWGC	2 cut(s)	143, 313
Tsp45I	GTSAC	3 cut(s)	214, 302, 505
TspDTI	ATGAA	2 cut(s)	113, 241
TspGWI	ACGGA	1 cut(s)	585
XapI	RAATTY	2 cut(s)	15, 496
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	1 cut(s)	189
ZraI	GACGTC	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.