Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005268.1

Orthogroup ID

OG0000970

Physical Location & Seq

Genomic Coordinates Forward (+)

26428 .. 26931

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005268.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggcaaatgcactgggaacgctttgtggtcaagcatatggtgcaggccaaattgactcacttggtatttatatgcagcgctcatgcatcatcctgaccattacttgtttcctcctttcatcactttacattttcgccactccaatcctaaagattttaggccaacaagatagtatagccgagtttgctggaaactacagtctgttgatattacctcagatgttttccttcgccatcaatttgcccacccaaatgttccttcaggctcagagcaaggtcggcgtcatcacatggatctcctttgtggctctgatcacgcacataggacttctttatctcttcattagcgtacttggctggggggtgaatggtgtagctatagcttataacatcacattctgggaagttgcagttggtcaatttgtgtatgctgtattttttgtgcaagaacggttggaatggcttttcatggttagcattcgtagacatttgggcttttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

167

Amino Acids

18.6

Weight (kDa)

6.69

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25640 AT4G25640 AT4G25640
fragaria_vesca	FvH4_7g30023 FvH4_7g30023 FvH4_7g30023 FvH4_7g30023 FvH4_7g30080 FvH4_7g30080 FvH4_7g30080
malus_domestica	MD01G1142500.v1.1 MD01G1206300.v1.1 MD01G1206500.v1.1 MD01G1206600.v1.1 MD01G1206700.v1.1 MD07G1277000.v1.1 MD07G1277200.v1.1 MD07G1277300.v1.1
prunus_persica	Prupe.2G037200_v2.0.a1 Prupe.2G298900_v2.0.a1 Prupe.2G299100_v2.0.a1 Prupe.2G299200_v2.0.a1 Prupe.2G299200_v2.0.a1 Prupe.2G299300_v2.0.a1
pyrus_communis	pycom01g16260 pycom01g21590 pycom01g21620 pycom01g21640 pycom01g21650 pycom01g21660 pycom01g21670 pycom07g25180 pycom07g25230
rosa_chinensis	RchiOBHm_Chr1g0378001 RchiOBHm_Chr1g0378071
rosa_laevigata	RLG00000026475 RLG00000026479
rosa_multiflora	Rmu_sc0001465.1_g000016 Rmu_sc0002068.1_g000003 Rmu_sc0005268.1_g000004 Rmu_sc0005268.1_g000009
rosa_roxburghii	Rroxscaffold_156G00440330 Rroxscaffold_156G00440380 Rroxscaffold_156G00440420 Rroxscaffold_4G00280810 Rroxscaffold_4G00280850 Rroxscaffold_4G00300720
rosa_rugosa	Rorug01G0406000 Rorug01G0406100
rosa_samantha	Rh1AG423700 Rh1AG425200 Rh1BG384900 Rh1CG397900 Rh1CG398900 Rh1DG415400 Rh1DG416100 Rh3AG010400 Rh3BG010100 Rh3CG009800 Rh4CG451900
rosa_wichuraiana	Rw0G004090 Rw1G037310 Rw1G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	484
AclWI	GGATC	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	1 cut(s)	351
AfeI	AGCGCT	1 cut(s)	80
AjuI	GAANNNNNNNTTGG	4 cut(s)	243, 275, 396, 428
AluBI	AGCT	2 cut(s)	377, 383
AluI	AGCT	2 cut(s)	377, 383
AlwI	GGATC	1 cut(s)	302
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	2 cut(s)	46, 160
ApeKI	GCWGC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	312
BfmI	CTRYAG	2 cut(s)	196, 378
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	230, 281
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	48, 162
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	48, 162
Bsp143I	GATC	2 cut(s)	294, 312
BspANI	GGCC	2 cut(s)	48, 162
BspCNI	CTCAG	2 cut(s)	229, 280
BspPI	GGATC	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	294, 312
BssNI	GRCGYC	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	200, 453
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	216, 267
BstF5I	GGATG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	2 cut(s)	297, 315
BstMBI	GATC	2 cut(s)	294, 312
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 185, 279, 354
BstSFI	CTRYAG	2 cut(s)	196, 378
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	48, 162
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	81
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	3 cut(s)	84, 291, 469
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	2 cut(s)	216, 267
DpnI	GATC	2 cut(s)	296, 314
DpnII	GATC	2 cut(s)	294, 312
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco47III	AGCGCT	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	245
EcoT22I	ATGCAT	1 cut(s)	89
FaeI	CATG	3 cut(s)	87, 294, 472
FatI	CATG	3 cut(s)	83, 290, 468
FauNDI	CATATG	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	77
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	77
GsaI	CCCAGC	1 cut(s)	361
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	48, 162
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	3 cut(s)	87, 294, 472
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	56
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	3 cut(s)	219, 270, 312
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	485
HpyAV	CCTTC	2 cut(s)	238, 269
HpyCH4III	ACNGT	2 cut(s)	200, 453
HpyCH4V	TGCA	6 cut(s)	11, 44, 76, 87, 410, 445
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 185, 279, 354
HpyF3I	CTNAG	2 cut(s)	216, 267
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	3 cut(s)	87, 294, 472
HspAI	GCGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	294, 312
LpnPI	CCDG	6 cut(s)	30, 107, 174, 248, 343, 385
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	96
MalI	GATC	2 cut(s)	296, 314
MboI	GATC	2 cut(s)	294, 312
MboII	GAAGA	1 cut(s)	331
MflI	RGATCY	1 cut(s)	294
MluCI	AATT	3 cut(s)	51, 238, 419
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	2 cut(s)	122, 225
Mph1103I	ATGCAT	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	477
MwoI	GCNNNNNNNGC	4 cut(s)	41, 185, 279, 354
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	2 cut(s)	294, 312
NlaIII	CATG	3 cut(s)	87, 294, 472
NmeAIII	GCCGAG	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	89
PctI	GAATGC	1 cut(s)	477
PkrI	GCNGC	1 cut(s)	78
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	251
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	2 cut(s)	294, 312
SchI	GAGTC	1 cut(s)	50
SetI	ASST	4 cut(s)	217, 279, 379, 385
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	2 cut(s)	196, 378
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	51, 238, 419
TaaI	ACNGT	2 cut(s)	200, 453
TasI	AATT	3 cut(s)	51, 238, 419
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	108, 331, 457
TspRI	CASTG	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	484
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.