Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000156

Orthogroup ID

OG0000970

Physical Location & Seq

Genomic Coordinates Forward (+)

88213 .. 91033

Gene Structure 2821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_156G00440380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGGCGCCGCTGCTGACCAACGGAGCTGTCACGGACTACGAGCTGGTGACAAGCTTTAAGCAGGCTCGGGAGGTGACGTGGAAAGAAACAGTGAAGCTATGGAGGATTGGTGGGCCTATAGCCTTCACCATAATCTGCAACTTCGGCACCAACTCGGTCTCCACCATGTTCGTCGGCCACATCGGAAACCTTGAGCTCTCCGCCGTCGCTATCTCTCTCTCCGTCATCAGTACCTTCTCTTTCGGCTTCATGCTTGGTATGGGAAGTGCACTAGAGACATTATGTGGTCAAGCATTTGGAGCTGGACGACTTCTTGGCCAAGATGACGATGTAGCGGACCTGGCGGGAACATTCACAGTGTATGTGATCCCTCAGCTATTCTCACTTGCCATCAATTTCCCTTGCCAAAAGTTCCTGCAGGCACAAAGCAAGGTCATAGTTCTAGCTTGGATCGGATTCATAGCCCTAATGGTTCACATTGGACTTCTTTTCCTCTTCATTTACGTGTTCGATTGGGGGATATATGGTGCAGCTATAGCTTTTGACATTACAGGTTGGGAAATTGTGATTGCTCAGCTTGTTTATATACTTGGTTGGTGTAAAGAAGGGTGGAGCGGGTTTTCATGGTTGGCTTTCAAAGACATTTGGGCCTTTGTGAAGCTTTCGCTTGAATCAGCTGTCATGCTTTGCCTTGAGAGTTGGTATATGATGAGTATCATCATTCTTACTGGCCATCTTGACAATGCGGTCATTGCTCTTGATTCACTTTCTATTTGCATGAATGTCAATGGATGGGAAGCAATGCTGTTCATTGGAATCAATGCTGCTATTAGAAGTTCCTTCAGGCTCCGAGAAGGCTCAAATCATGACGTGGATTTCAGTGGTGGCGGTCAATCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

301

Amino Acids

32.96

Weight (kDa)

4.73

Isoelectric Point (pI)

24.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	40 - 104	2.6e-12	MatE
MatE	PF01554	104 - 164	6.1e-07	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25640 AT4G25640 AT4G25640
fragaria_vesca	FvH4_7g30023 FvH4_7g30023 FvH4_7g30023 FvH4_7g30023 FvH4_7g30080 FvH4_7g30080 FvH4_7g30080
malus_domestica	MD01G1142500.v1.1 MD01G1206300.v1.1 MD01G1206500.v1.1 MD01G1206600.v1.1 MD01G1206700.v1.1 MD07G1277000.v1.1 MD07G1277200.v1.1 MD07G1277300.v1.1
prunus_persica	Prupe.2G037200_v2.0.a1 Prupe.2G298900_v2.0.a1 Prupe.2G299100_v2.0.a1 Prupe.2G299200_v2.0.a1 Prupe.2G299200_v2.0.a1 Prupe.2G299300_v2.0.a1
pyrus_communis	pycom01g16260 pycom01g21590 pycom01g21620 pycom01g21640 pycom01g21650 pycom01g21660 pycom01g21670 pycom07g25180 pycom07g25230
rosa_chinensis	RchiOBHm_Chr1g0378001 RchiOBHm_Chr1g0378071
rosa_laevigata	RLG00000026475 RLG00000026479
rosa_multiflora	Rmu_sc0001465.1_g000016 Rmu_sc0002068.1_g000003 Rmu_sc0005268.1_g000004 Rmu_sc0005268.1_g000009
rosa_roxburghii	Rroxscaffold_156G00440330 Rroxscaffold_156G00440380 Rroxscaffold_156G00440420 Rroxscaffold_4G00280810 Rroxscaffold_4G00280850 Rroxscaffold_4G00300720
rosa_rugosa	Rorug01G0406000 Rorug01G0406100
rosa_samantha	Rh1AG423700 Rh1AG425200 Rh1BG384900 Rh1CG397900 Rh1CG398900 Rh1DG415400 Rh1DG416100 Rh3AG010400 Rh3BG010100 Rh3CG009800 Rh4CG451900
rosa_wichuraiana	Rw0G004090 Rw1G037310 Rw1G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	749
AccB1I	GGYRCC	2 cut(s)	7, 149
AccBSI	CCGCTC	1 cut(s)	618
AciI	CCGC	7 cut(s)	11, 204, 338, 347, 618, 749, 891
AclWI	GGATC	2 cut(s)	364, 461
AcoI	YGGCCR	3 cut(s)	178, 319, 733
AcuI	CTGAAG	1 cut(s)	829
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	2 cut(s)	640, 674
AjiI	CACGTC	2 cut(s)	81, 874
AjnI	CCWGG	1 cut(s)	342
Alw21I	GWGCWC	2 cut(s)	201, 274
Alw26I	GTCTC	2 cut(s)	166, 272
Alw44I	GTGCAC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	364, 461
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	5 cut(s)	116, 178, 319, 651, 733
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	3 cut(s)	13, 533, 827
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	3 cut(s)	116, 340, 651
AsuHPI	GGTGA	3 cut(s)	61, 88, 121
AvaI	CYCGRG	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	274
BalI	TGGCCA	2 cut(s)	321, 735
BanI	GGYRCC	2 cut(s)	7, 149
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	201, 274
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	545, 814
BccI	CCATC	3 cut(s)	401, 744, 789
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	166, 272
BfaI	CTAG	2 cut(s)	275, 446
BfmI	CTRYAG	3 cut(s)	120, 419, 537
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	4 cut(s)	11, 14, 534, 828
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	4 cut(s)	12, 15, 535, 829
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	69
BmgBI	CACGTC	2 cut(s)	81, 874
BmgT120I	GGNCC	3 cut(s)	116, 340, 651
BmiI	GGNNCC	3 cut(s)	9, 151, 851
BmrFI	CCNGG	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	2 cut(s)	215, 716
BsaAI	YACGTR	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	716
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	166
BsaXI	ACNNNNNCTCC	6 cut(s)	65, 95, 97, 127, 146, 176
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	2 cut(s)	753, 810
Bse8I	GATNNNNATC	1 cut(s)	716
BseBI	CCWGG	1 cut(s)	344
BseGI	GGATG	1 cut(s)	800
BseJI	GATNNNNATC	1 cut(s)	716
BseMI	GCAATG	2 cut(s)	753, 810
BseMII	CTCAG	2 cut(s)	389, 590
BseNI	ACTGG	1 cut(s)	736
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	545, 814
BsgI	GTGCAG	1 cut(s)	552
BshFI	GGCC	5 cut(s)	118, 180, 321, 653, 735
BshNI	GGYRCC	2 cut(s)	7, 149
BsiHKAI	GWGCWC	2 cut(s)	201, 274
BsiHKCI	CYCGRG	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	166, 272
BsnI	GGCC	5 cut(s)	118, 180, 321, 653, 735
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	201, 274
Bsp143I	GATC	2 cut(s)	369, 453
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	7 cut(s)	11, 204, 338, 347, 618, 749, 891
BspANI	GGCC	5 cut(s)	118, 180, 321, 653, 735
BspCNI	CTCAG	2 cut(s)	388, 589
BspHI	TCATGA	1 cut(s)	868
BspLI	GGNNCC	3 cut(s)	9, 151, 851
BspMAI	CTGCAG	1 cut(s)	423
BspPI	GGATC	2 cut(s)	364, 461
BspT107I	GGYRCC	2 cut(s)	7, 149
BspTNI	GGTCTC	1 cut(s)	166
BsrBI	CCGCTC	1 cut(s)	618
BsrDI	GCAATG	2 cut(s)	753, 810
BsrI	ACTGG	1 cut(s)	736
BssMI	GATC	2 cut(s)	369, 453
BssNI	GRCGYC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	2 cut(s)	94, 361
Bst6I	CTCTTC	1 cut(s)	503
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	508
BstC8I	GCNNGC	2 cut(s)	66, 423
BstDEI	CTNAG	2 cut(s)	375, 576
BstF5I	GGATG	1 cut(s)	800
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	372, 456
BstMAI	GTCTC	2 cut(s)	166, 272
BstMBI	GATC	2 cut(s)	369, 453
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 302, 344, 539, 755
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	3 cut(s)	120, 419, 537
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	545, 814
BsuRI	GGCC	5 cut(s)	118, 180, 321, 653, 735
BtrI	CACGTC	2 cut(s)	81, 874
BtsCI	GGATG	1 cut(s)	800
BtsIMutI	CAGTG	3 cut(s)	99, 366, 889
Cac8I	GCNNGC	2 cut(s)	66, 423
CciI	TCATGA	1 cut(s)	868
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	116, 340, 651
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	6 cut(s)	169, 253, 627, 685, 781, 869
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	2 cut(s)	375, 576
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	2 cut(s)	371, 455
DpnII	GATC	2 cut(s)	369, 453
DrdI	GACNNNNNNGTC	1 cut(s)	749
DseDI	GACNNNNNNGTC	1 cut(s)	749
EaeI	YGGCCR	3 cut(s)	178, 319, 733
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
EciI	GGCGGA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	829
Eco88I	CYCGRG	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	201
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
FaeI	CATG	6 cut(s)	172, 256, 630, 688, 784, 872
FatI	CATG	6 cut(s)	168, 252, 626, 684, 780, 868
FauI	CCCGC	2 cut(s)	340, 611
Fnu4HI	GCNGC	4 cut(s)	11, 14, 534, 828
FokI	GGATG	1 cut(s)	807
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	4 cut(s)	11, 14, 534, 828
FspBI	CTAG	2 cut(s)	275, 446
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	4 cut(s)	11, 14, 534, 828
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	5 cut(s)	118, 180, 321, 653, 735
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	6 cut(s)	172, 256, 630, 688, 784, 872
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	2 cut(s)	55, 662
HinfI	GANTC	4 cut(s)	459, 674, 764, 819
HphI	GGTGA	3 cut(s)	61, 88, 121
Hpy166II	GTNNAC	2 cut(s)	272, 478
Hpy188I	TCNGA	3 cut(s)	188, 458, 854
Hpy188III	TCNNGA	4 cut(s)	71, 740, 761, 869
Hpy8I	GTNNAC	2 cut(s)	272, 478
Hpy99I	CGWCG	2 cut(s)	179, 212
HpyAV	CCTTC	5 cut(s)	136, 247, 602, 851, 853
HpyCH4III	ACNGT	2 cut(s)	94, 361
HpyCH4IV	ACGT	3 cut(s)	80, 507, 873
HpyCH4V	TGCA	5 cut(s)	141, 272, 421, 533, 780
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 302, 344, 539, 755
HpyF3I	CTNAG	2 cut(s)	375, 576
HpySE526I	ACGT	3 cut(s)	80, 507, 873
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	6 cut(s)	172, 256, 630, 688, 784, 872
HspAI	GCGC	1 cut(s)	8
KasI	GGCGCC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	369, 453
LmnI	GCTCC	4 cut(s)	26, 302, 615, 855
Lsp1109I	GCAGC	2 cut(s)	545, 814
MaeI	CTAG	2 cut(s)	275, 446
MaeII	ACGT	3 cut(s)	80, 507, 873
MaeIII	GTNAC	3 cut(s)	31, 49, 76
MalI	GATC	2 cut(s)	371, 455
MbiI	CCGCTC	1 cut(s)	618
MboI	GATC	2 cut(s)	369, 453
MboII	GAAGA	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	201, 274
MlsI	TGGCCA	2 cut(s)	321, 735
MluCI	AATT	2 cut(s)	397, 564
MluNI	TGGCCA	2 cut(s)	321, 735
Mly113I	GGCGCC	1 cut(s)	8
MnlI	CCTC	4 cut(s)	67, 99, 384, 506
Mox20I	TGGCCA	2 cut(s)	321, 735
MscI	TGGCCA	2 cut(s)	321, 735
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	2 cut(s)	321, 735
MspA1I	CMGCKG	2 cut(s)	13, 680
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	5 cut(s)	147, 302, 344, 539, 755
NarI	GGCGCC	1 cut(s)	8
NdeII	GATC	2 cut(s)	369, 453
NlaIII	CATG	6 cut(s)	172, 256, 630, 688, 784, 872
NlaIV	GGNNCC	3 cut(s)	9, 151, 851
NmuCI	GTSAC	3 cut(s)	31, 49, 76
PagI	TCATGA	1 cut(s)	868
PfeI	GAWTC	4 cut(s)	459, 674, 764, 819
PkrI	GCNGC	4 cut(s)	12, 15, 535, 829
PluTI	GGCGCC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	508
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	3 cut(s)	9, 151, 851
PspPI	GGNCC	3 cut(s)	116, 340, 651
PstI	CTGCAG	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	4 cut(s)	11, 14, 534, 828
Sau3AI	GATC	2 cut(s)	369, 453
Sau96I	GGNCC	3 cut(s)	116, 340, 651
SbfI	CCTGCAGG	1 cut(s)	423
ScrFI	CCNGG	1 cut(s)	344
SdaI	CCTGCAGG	1 cut(s)	423
SduI	GDGCHC	2 cut(s)	201, 274
SfcI	CTRYAG	3 cut(s)	120, 419, 537
SfoI	GGCGCC	1 cut(s)	9
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	194, 695
SmoI	CTYRAG	2 cut(s)	194, 695
Sse8387I	CCTGCAGG	1 cut(s)	423
Sse9I	AATT	2 cut(s)	397, 564
SsiI	CCGC	7 cut(s)	11, 204, 338, 347, 618, 749, 891
SspDI	GGCGCC	1 cut(s)	7
SspMI	CTAG	2 cut(s)	275, 446
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	94, 361
TaiI	ACGT	3 cut(s)	83, 510, 876
TaqI	TCGA	1 cut(s)	513
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	397, 564
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	4 cut(s)	459, 674, 764, 819
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	3 cut(s)	99, 366, 889
TseFI	GTSAC	3 cut(s)	31, 49, 76
TseI	GCWGC	3 cut(s)	13, 533, 827
Tsp45I	GTSAC	3 cut(s)	31, 49, 76
TspDTI	ATGAA	6 cut(s)	241, 451, 490, 615, 797, 802
TspGWI	ACGGA	3 cut(s)	39, 50, 214
TspRI	CASTG	3 cut(s)	99, 366, 889
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	340
XspI	CTAG	2 cut(s)	275, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.