Prupe.2G037200_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000970
Physical Location & Seq
Forward (+)
3995340 .. 3999355
4016 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G037200.1

Sequence Viewer

Length: 1473 bp
ATGGAGGCGCCACTGCTTCCGGCAGTGAACGGCGGCGATGTTCGAGACTATGAGCCGGTGACGAGCTGGAAGGATGCTCGGTCGGTGACGTGGAGAGAGACTCAGAAGTTGTGGAAAATAGGAGGGCCCATCGCCTTCACAATCATCTGCAACTTTGGGACCAACTCTGTTTCCACCATGTTCGTCGGACACCTCGGAAACCTTCAGCTCTCTGCCGTCTCAATCTCACTCTCTGTGATCTCAACCTTCTCTTTCGGCTTCTTGCTCGGCATGGGAAGTGCATTAGAGACGCTTTGTGGTCAAGCATTTGGTGCTGGAAGGGTTAACATGCTTGGAGTGTACATGCAAAGGTCATGGATCATTCTATTTACCAGCTGTGTCATCCTCACGCCACTCTACGTTTTCTCTGCCCCGATTTTAAAGCTTCTTGGGCAGGACGAAGAAGTGGCTGACCTTGCTGGAACCTTCACCATATATGTCATTCCTCAGTTATTCTCACTTGCCATCACGTTCCCTTCCCAAAAGTTCCTTCAGGCACAAAGCAAGGTTGCTGTTCTTGCATGGATTGGTTTTCTGGCCCTTATTATACACATTGGATGGCTCTTTCTCTTCATTTACGTGTTGGATTGGGGCATCTATGGTGCAGCTCTAGCATTTGACATCACAGGTTGGGAACTTGCGATTTGTCAAGTTATTTATATAATCGGTTGGTGCAATGAAGGGTGGAGTGGTTTTTCATGGTTAGCTTTCAAAGACATCTGGGCCTTTGTAAGGCTCTCACTCGAATCAGCTATCATGCTTTGCCTTGAGATTTGGTATATGATGAGTATAATCATTCTTACTGGACATCTTGGCAATGCTGTGATTTCTCTTGATTCACTTTCTATCTGCATGAATCTCAATGGATGGGAAGCAATGTTGTTCATTGGAATTAATGCTGCAGTAAGTGTTCGAGTTTCCAATGAACTTGGATTGGGACGTCCAAGAGCAGCTAAATACGCTGTCTGCGTGACAGTCCTTGAGTCTCTGCTCATTGGGATTGTTTGCATGATTGTCATCTTGATAACCAAAGACTACTTTTCTGTCATCTTCACAAGCGACGCGGAATTGCAACAAGCTGTTGCTAAGCTAGCATTTCTTCTTGGAATTACCATGGTTCTTAATAGTGTCCAACCCGTCATTTCGGGTGTTGCTATTGGAGGCGGATGGCAAGGACTGGTGGCTTATATCAACTTGGGTTGTTATTACATTTTTGGCCTCCCACTTGGATTCCTTCTTGGTTATAAAGCAAACTGGGGAGTTAAGGGAATTTGGGGAGGTATGATATGTGGAACTGCTCTTCAAACGTTGCTTCTCTTGATAGTGCTTTATAGAACCAACTGGAACAAGGAGGTTGAACAATCTTCGGAGCGAATGAAGAAGTGGGGTGGACAAAACGTTGAATATGAGAAGATAGCTGACAACCATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

491

Amino Acids

53.88

Weight (kDa)

5.67

Isoelectric Point (pI)

30.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1284
AatII GACGTC 1 cut(s) 982
AccB1I GGYRCC 1 cut(s) 7
AccII CGCG 1 cut(s) 1103
AciI CCGC 3 cut(s) 33, 1103, 1203
AclI AACGTT 2 cut(s) 1346, 1437
AclWI GGATC 1 cut(s) 365
AcsI RAATTY 1 cut(s) 1308
AcuI CTGAAG 2 cut(s) 188, 515
AcyI GRCGYC 2 cut(s) 8, 979
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 771
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 4 cut(s) 751, 1343, 1397, 1442
AjiI CACGTC 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
Alw26I GTCTC 5 cut(s) 39, 92, 223, 281, 1029
AlwI GGATC 1 cut(s) 365
AoxI GGCC 4 cut(s) 125, 576, 762, 1255
ApaI GGGCCC 1 cut(s) 129
ApeKI GCWGC 3 cut(s) 644, 938, 989
ApoI RAATTY 1 cut(s) 1308
AseI ATTAAT 1 cut(s) 933
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 5 cut(s) 125, 126, 159, 577, 762
AsuHPI GGTGA 3 cut(s) 70, 97, 460
AsuNHI GCTAGC 1 cut(s) 1129
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 129
BbvI GCAGC 3 cut(s) 656, 925, 1001
BccI CCATC 5 cut(s) 137, 512, 591, 900, 1200
BceAI ACGGC 2 cut(s) 46, 200
BcoDI GTCTC 5 cut(s) 39, 92, 223, 281, 1029
BfaI CTAG 2 cut(s) 650, 1130
BfmI CTRYAG 1 cut(s) 939
BfoI RGCGCY 1 cut(s) 11
BisI GCNGC 4 cut(s) 34, 645, 939, 990
BlpI GCTNAGC 1 cut(s) 1125
BlsI GCNGC 4 cut(s) 35, 646, 940, 991
Bme18I GGWCC 1 cut(s) 159
BmgBI CACGTC 1 cut(s) 90
BmgT120I GGNCC 5 cut(s) 125, 126, 159, 577, 762
BmiI GGNNCC 4 cut(s) 9, 127, 160, 463
BmrI ACTGGG 1 cut(s) 1303
BmsI GCATC 2 cut(s) 64, 642
BmtI GCTAGC 1 cut(s) 1133
BmuI ACTGGG 1 cut(s) 1303
BplI GAGNNNNNCTC 2 cut(s) 85, 117
Bpu1102I GCTNAGC 1 cut(s) 1125
BpuEI CTTGAG 2 cut(s) 827, 1040
BsaAI YACGTR 1 cut(s) 619
BsaBI GATNNNNATC 1 cut(s) 1055
BsaHI GRCGYC 2 cut(s) 8, 979
BsaJI CCNNGG 2 cut(s) 193, 1152
Bsc4I CCNNNNNNNGG 1 cut(s) 771
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 4 cut(s) 847, 1221, 1298, 1385
Bse3DI GCAATG 3 cut(s) 721, 862, 921
Bse8I GATNNNNATC 1 cut(s) 1055
BseDI CCNNGG 2 cut(s) 193, 1152
BseGI GGATG 5 cut(s) 79, 381, 602, 911, 1211
BseJI GATNNNNATC 1 cut(s) 1055
BseLI CCNNNNNNNGG 1 cut(s) 771
BseMI GCAATG 3 cut(s) 721, 862, 921
BseMII CTCAG 2 cut(s) 116, 500
BseNI ACTGG 4 cut(s) 847, 1221, 1298, 1385
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 3 cut(s) 656, 925, 1001
BsgI GTGCAG 1 cut(s) 663
Bsh1236I CGCG 1 cut(s) 1103
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 4 cut(s) 127, 578, 764, 1257
BshNI GGYRCC 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 20, 56
BslFI GGGAC 2 cut(s) 172, 990
BslI CCNNNNNNNGG 1 cut(s) 771
BsmAI GTCTC 5 cut(s) 39, 92, 223, 281, 1029
BsmBI CGTCTC 2 cut(s) 223, 281
BsmFI GGGAC 2 cut(s) 172, 990
BsnI GGCC 4 cut(s) 127, 578, 764, 1257
Bsp120I GGGCCC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 129
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 237, 357
Bsp1720I GCTNAGC 1 cut(s) 1125
Bsp19I CCATGG 1 cut(s) 1152
BspACI CCGC 3 cut(s) 33, 1103, 1203
BspANI GGCC 4 cut(s) 127, 578, 764, 1257
BspCNI CTCAG 2 cut(s) 115, 499
BspFNI CGCG 1 cut(s) 1103
BspLI GGNNCC 4 cut(s) 9, 127, 160, 463
BspMAI CTGCAG 1 cut(s) 943
BspOI GCTAGC 1 cut(s) 1133
BspPI GGATC 1 cut(s) 365
BspQI GCTCTTC 1 cut(s) 1344
BspT107I GGYRCC 1 cut(s) 7
BsrDI GCAATG 3 cut(s) 721, 862, 921
BsrFI RCCGGY 1 cut(s) 55
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 4 cut(s) 847, 1221, 1298, 1385
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 193, 1152
BssMI GATC 2 cut(s) 237, 357
BssNI GRCGYC 2 cut(s) 8, 979
BssT1I CCWWGG 1 cut(s) 1152
Bst4CI ACNGT 1 cut(s) 1015
Bst6I CTCTTC 2 cut(s) 614, 1344
BstACI GRCGYC 2 cut(s) 8, 979
BstAPI GCANNNNNTGC 1 cut(s) 311
BstAUI TGTACA 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 619
BstC8I GCNNGC 1 cut(s) 1131
BstDEI CTNAG 3 cut(s) 102, 486, 1125
BstDSI CCRYGG 1 cut(s) 1152
BstENI CCTNNNNNAGG 1 cut(s) 769
BstF5I GGATG 5 cut(s) 79, 381, 602, 911, 1211
BstFNI CGCG 1 cut(s) 1103
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 2 cut(s) 240, 360
BstMAI GTCTC 5 cut(s) 39, 92, 223, 281, 1029
BstMBI GATC 2 cut(s) 237, 357
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 7 cut(s) 311, 430, 455, 557, 650, 998, 1130
BstNSI RCATGY 2 cut(s) 331, 346
BstSFI CTRYAG 1 cut(s) 939
BstSLI GKGCMC 1 cut(s) 129
BstUI CGCG 1 cut(s) 1103
BstV1I GCAGC 3 cut(s) 656, 925, 1001
BsuRI GGCC 4 cut(s) 127, 578, 764, 1257
BtgI CCRYGG 1 cut(s) 1152
BtgZI GCGATG 2 cut(s) 51, 115
BtrI CACGTC 1 cut(s) 90
BtsCI GGATG 5 cut(s) 79, 381, 602, 911, 1211
BtsI GCAGTG 2 cut(s) 11, 30
BtsIMutI CAGTG 2 cut(s) 11, 30
Cac8I GCNNGC 1 cut(s) 1131
CfoI GCGC 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 5 cut(s) 125, 126, 159, 577, 762
CseI GACGC 2 cut(s) 298, 1109
Csp6I GTAC 1 cut(s) 340
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 3 cut(s) 102, 486, 1125
DinI GGCGCC 1 cut(s) 9
DpnI GATC 2 cut(s) 239, 359
DpnII GATC 2 cut(s) 237, 357
DraI TTTAAA 1 cut(s) 420
Eam1104I CTCTTC 2 cut(s) 614, 1344
EarI CTCTTC 2 cut(s) 614, 1344
EciI GGCGGA 1 cut(s) 1218
Eco130I CCWWGG 1 cut(s) 1152
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 188, 515
EcoNI CCTNNNNNAGG 1 cut(s) 769
EcoO109I RGGNCCY 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 1152
EcoT38I GRGCYC 1 cut(s) 129
EgeI GGCGCC 1 cut(s) 9
EheI GGCGCC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 1152
Esp3I CGTCTC 2 cut(s) 223, 281
FaqI GGGAC 2 cut(s) 172, 990
Fnu4HI GCNGC 4 cut(s) 34, 645, 939, 990
FokI GGATG 5 cut(s) 86, 368, 609, 918, 1218
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 4 cut(s) 34, 645, 939, 990
FspBI CTAG 2 cut(s) 650, 1130
GlaI GCGC 1 cut(s) 9
GluI GCNGC 4 cut(s) 34, 645, 939, 990
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 4 cut(s) 127, 578, 764, 1257
HapII CCGG 2 cut(s) 20, 56
HgaI GACGC 2 cut(s) 298, 1109
HhaI GCGC 1 cut(s) 10
Hin1I GRCGYC 2 cut(s) 8, 979
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 6 cut(s) 100, 785, 875, 895, 1022, 1269
HpaI GTTAAC 1 cut(s) 325
HpaII CCGG 2 cut(s) 20, 56
HphI GGTGA 3 cut(s) 70, 97, 460
Hpy166II GTNNAC 4 cut(s) 28, 325, 340, 1430
Hpy188I TCNGA 4 cut(s) 105, 188, 197, 1408
Hpy188III TCNNGA 4 cut(s) 44, 872, 1060, 1357
Hpy8I GTNNAC 4 cut(s) 28, 325, 340, 1430
Hpy99I CGWCG 2 cut(s) 188, 1103
HpyCH4III ACNGT 1 cut(s) 1015
HpyCH4IV ACGT 7 cut(s) 89, 399, 509, 618, 979, 1346, 1437
HpyF10VI GCNNNNNNNGC 7 cut(s) 311, 430, 455, 557, 650, 998, 1130
HpyF3I CTNAG 3 cut(s) 102, 486, 1125
HpySE526I ACGT 7 cut(s) 89, 399, 509, 618, 979, 1346, 1437
Hsp92I GRCGYC 2 cut(s) 8, 979
HspAI GCGC 1 cut(s) 8
KasI GGCGCC 1 cut(s) 7
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 237, 357
LguI GCTCTTC 1 cut(s) 1344
LmnI GCTCC 1 cut(s) 1408
Lsp1109I GCAGC 3 cut(s) 656, 925, 1001
LweI GCATC 2 cut(s) 64, 642
MaeI CTAG 2 cut(s) 650, 1130
MaeII ACGT 7 cut(s) 89, 399, 509, 618, 979, 1346, 1437
MaeIII GTNAC 3 cut(s) 58, 85, 1009
MalI GATC 2 cut(s) 239, 359
MboI GATC 2 cut(s) 237, 357
MboII GAAGA 8 cut(s) 452, 601, 1081, 1130, 1331, 1395, 1429, 1462
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 4 cut(s) 930, 1106, 1146, 1308
Mly113I GGCGCC 1 cut(s) 8
MlyI GAGTC 2 cut(s) 94, 1031
MmeI TCCRAC 3 cut(s) 166, 603, 1195
MnlI CCTC 8 cut(s) 116, 203, 395, 495, 1193, 1268, 1310, 1384
MseI TTAA 5 cut(s) 324, 419, 933, 1161, 1302
MslI CAYNNNNRTG 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 2 cut(s) 20, 56
MvnI CGCG 1 cut(s) 1103
MwoI GCNNNNNNNGC 7 cut(s) 311, 430, 455, 557, 650, 998, 1130
NarI GGCGCC 1 cut(s) 8
NcoI CCATGG 1 cut(s) 1152
NdeII GATC 2 cut(s) 237, 357
NheI GCTAGC 1 cut(s) 1129
NlaIV GGNNCC 4 cut(s) 9, 127, 160, 463
NmeAIII GCCGAG 1 cut(s) 246
NmuCI GTSAC 3 cut(s) 58, 85, 1009
NspI RCATGY 2 cut(s) 331, 346
PciSI GCTCTTC 1 cut(s) 1344
PcsI WCGNNNNNNNCGW 1 cut(s) 1005
PfeI GAWTC 4 cut(s) 785, 875, 895, 1269
PkrI GCNGC 4 cut(s) 35, 646, 940, 991
PleI GAGTC 2 cut(s) 94, 1030
PluTI GGCGCC 1 cut(s) 11
PpsI GAGTC 2 cut(s) 94, 1030
Ppu21I YACGTR 1 cut(s) 619
PshBI ATTAAT 1 cut(s) 933
PsiI TTATAA 1 cut(s) 1284
Psp1406I AACGTT 2 cut(s) 1346, 1437
PspN4I GGNNCC 4 cut(s) 9, 127, 160, 463
PspOMI GGGCCC 1 cut(s) 125
PspPI GGNCC 5 cut(s) 125, 126, 159, 577, 762
PstI CTGCAG 1 cut(s) 943
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 617
SapI GCTCTTC 1 cut(s) 1344
SaqAI TTAA 5 cut(s) 324, 419, 933, 1161, 1302
SatI GCNGC 4 cut(s) 34, 645, 939, 990
Sau3AI GATC 2 cut(s) 237, 357
Sau96I GGNCC 5 cut(s) 125, 126, 159, 577, 762
SchI GAGTC 2 cut(s) 94, 1031
SduI GDGCHC 1 cut(s) 129
SfaNI GCATC 2 cut(s) 64, 642
SfcI CTRYAG 1 cut(s) 939
SfoI GGCGCC 1 cut(s) 9
SinI GGWCC 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 2 cut(s) 806, 1019
SmoI CTYRAG 2 cut(s) 806, 1019
Sse9I AATT 4 cut(s) 930, 1106, 1146, 1308
SsiI CCGC 3 cut(s) 33, 1103, 1203
SspDI GGCGCC 1 cut(s) 7
SspMI CTAG 2 cut(s) 650, 1130
StyI CCWWGG 1 cut(s) 1152
TaaI ACNGT 1 cut(s) 1015
TaiI ACGT 7 cut(s) 92, 402, 512, 621, 982, 1349, 1440
TaqI TCGA 3 cut(s) 43, 783, 952
TaqII GACCGA 1 cut(s) 69
TasI AATT 4 cut(s) 930, 1106, 1146, 1308
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 4 cut(s) 785, 875, 895, 1269
Tru1I TTAA 5 cut(s) 324, 419, 933, 1161, 1302
Tru9I TTAA 5 cut(s) 324, 419, 933, 1161, 1302
TscAI CASTG 2 cut(s) 18, 30
TseFI GTSAC 3 cut(s) 58, 85, 1009
TseI GCWGC 3 cut(s) 644, 938, 989
Tsp45I GTSAC 3 cut(s) 58, 85, 1009
TspDTI ATGAA 7 cut(s) 601, 726, 732, 908, 913, 978, 1430
TspRI CASTG 2 cut(s) 18, 30
VpaK11BI GGWCC 1 cut(s) 159
VspI ATTAAT 1 cut(s) 933
XagI CCTNNNNNAGG 1 cut(s) 769
XapI RAATTY 1 cut(s) 1308
XceI RCATGY 2 cut(s) 331, 346
XspI CTAG 2 cut(s) 650, 1130
ZraI GACGTC 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.