Rroxscaffold_4G00300720

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
21080817 .. 21082195
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300720.1

Sequence Viewer

Length: 210 bp
ATGCATCATCTTTACTGTGAGCAAATTAAAGAGATGCAACAAGCAGTTTCTCGTTTAGCTTTCCTTCTCAGTATGACAATGATACTCGATAGTGTTCAGCCGGTTATTTCAGGTGTTGCTGTTGGAGGAGGGTGGCAAGCTTTGGTGACTTACATAAACTTGTTTAGCTATTACATTGTTGGTTTATCTCTTTGGGTTTCTTCTTGGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.78

Weight (kDa)

5.97

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 3 cut(s) 59, 140, 168
AluI AGCT 3 cut(s) 59, 140, 168
AsuHPI GGTGA 1 cut(s) 157
BmsI GCATC 2 cut(s) 13, 24
Bse118I RCCGGY 1 cut(s) 100
BseMII CTCAG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 100
CviJI RGCY 4 cut(s) 59, 100, 140, 168
CviKI_1 RGCY 4 cut(s) 59, 100, 140, 168
DdeI CTNAG 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 2 cut(s) 74, 155
HapII CCGG 1 cut(s) 101
HindIII AAGCTT 1 cut(s) 138
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 2 cut(s) 4, 37
HpyF3I CTNAG 1 cut(s) 68
LpnPI CCDG 2 cut(s) 96, 114
LweI GCATC 2 cut(s) 13, 24
MaeIII GTNAC 1 cut(s) 145
MboII GAAGA 1 cut(s) 192
MluCI AATT 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 2 cut(s) 119, 122
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 27
MspI CCGG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 6
SaqAI TTAA 1 cut(s) 27
SetI ASST 4 cut(s) 61, 115, 142, 170
SfaNI GCATC 2 cut(s) 13, 24
SgeI CNNG 7 cut(s) 53, 63, 98, 113, 123, 149, 172
Sse9I AATT 1 cut(s) 24
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 24
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.