MD07G1277000.v1.1

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
34232019 .. 34236081
4063 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1277000.v1.1.491

Sequence Viewer

Length: 1479 bp
ATGGTGACGCCAGTGCCACTGCTTCACGCAGTGAACGGCGGCGAGTTCCATGACTACGAGCCGGTGAGGAACTTCAGGGATGCCCGGTCGGTGGCGTGGAATGAAACCAAGAAGCTGTGGAAAATTGCTGGGCCCATCGCCTTCACTATCATCTGCAACTTTGGCAACAACACAGCTACCACCATGTTTGTCGGCCATCTCGGAAACCTCCAGCTCTCCGCCGTTTCCATCTCTCTCTCCGTCATCTGCACCTTCTCATTCGGCTTCATGCTTGGCATGGGGAGTGCGTTAGAGACGCTTTGTGGCCAAGCTTTCGGAGCCGGACACGTTAACATGCTCGGCGTTTACATGCAAAGATCATGGATCATTCTGTTCACCAGCTGTGTTATCCTCACGCCAATCTATATCTTCTCCGCCCCGATTTTGAAGCTTCTCGGGCAGGATGATGACGTGGCTAATCTTGCTGGAACATTCACCATATATTGCATACCGCAGTTGTTCTCCCTTGCCTTCAACTTCCCTGCCCAGAAGTTCCTTCAGGCTCAAAGCAAAGTTCTCGTGCTTGCGTGGATTGGATTTATCTCGCTTCTTGTACAAATTGGAATGCTTTCTCTCTTCATTTACGTGTTCGATTGGGGTATATATGGTGCAGGCATTGCATTTGGCATCACAGGTTGGGTAATTGTGATTGCTCAAAATATTTACATAATGAAATGGTGCAAGGAAGGGTGGACAGGGTTTTCGTGGTTGGCGTTCAAAGACATATGGGCGTTTGTCCGGCTTTCACTTGAGTCCGCCGTGATGCTTTGCCTGGAGATTTGGTATATGATGACTCTTATCCTTGCTACAGGCCACCTTAGTAATGCCGTACTTTCTATTGACTCGCTCGCTATTTGCTTAAATTTCAACGGTTTGGAAGCAATGCTGTTCATTGGAATCAATGCTGCTATAAGTGTTCGGGTCTCCAACGAACTTGGATTGGCACGTCCAAGAGCAGCTAAATATTCAGTCTACGTGACGGTTGGTCAGTCTCTGCTCATCGGAATCGTTTGCATGGTTGTGATCTTGATAACCAAAGACTACTTTTCTGTCCTGTACACAAACAACGAGGAATTGCAACATTCAGTTTCCAATCTAGCAATTCTTCTCGGAGTGACTATGCTTCTCAATAGCGTCCAACCAGTTATTTCAGGTGTTGCTATCGGAGGCGGATGGCAGGGACTGGTGGCTTATGTAAACTTGGGTTGTTACTACATTATCGGGCTCCCGCTCGGTATCCTTCTTGGCTATGTAGCAAAATGGGGAGTGAAGGGAATTTGGGGAGGCATGATATGCGGGACTGCTCTTCAAACCTTGCTGCTTATGATTGTACTTTACAGAACCAACTGGAACAAGGAGGTTGAACAAACAACGGACCGGATGAAGAAGTGGGCTGGGCAAGACTACGGCGACGAGGAGATAGCTGCTGTTAGCGTATGA
Functional Annotation

Protein Analysis

493

Amino Acids

54.01

Weight (kDa)

6.59

Isoelectric Point (pI)

25.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 45 - 200 4.1e-32 MatE
MatE PF01554 266 - 426 1.5e-20 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1270
AccI GTMKAC 1 cut(s) 1011
AciI CCGC 8 cut(s) 39, 219, 414, 491, 795, 1209, 1268, 1335
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 2 cut(s) 193, 304
AcsI RAATTY 2 cut(s) 901, 1314
AcuI CTGAAG 2 cut(s) 58, 521
AcyI GRCGYC 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 31
AfaI GTAC 4 cut(s) 594, 870, 1097, 1371
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 2 cut(s) 325, 624
AgsI TTSAA 6 cut(s) 427, 514, 757, 907, 1349, 1403
AhdI GACNNNNNGTC 1 cut(s) 1023
AjiI CACGTC 2 cut(s) 451, 986
AjnI CCWGG 1 cut(s) 810
AluBI AGCT 8 cut(s) 115, 176, 214, 311, 381, 430, 998, 1463
AluI AGCT 8 cut(s) 115, 176, 214, 311, 381, 430, 998, 1463
Alw26I GTCTC 3 cut(s) 287, 967, 1035
AlwI GGATC 1 cut(s) 371
AlwNI CAGNNNCTG 2 cut(s) 1033, 1222
Ama87I CYCGRG 1 cut(s) 434
AoxI GGCC 4 cut(s) 131, 193, 304, 850
ApaI GGGCCC 1 cut(s) 135
ApeKI GCWGC 4 cut(s) 944, 995, 1357, 1463
ApoI RAATTY 2 cut(s) 901, 1314
ArsI GACNNNNNNTTYG 2 cut(s) 724, 756
Asp700I GAANNNNTTC 1 cut(s) 607
AspS9I GGNCC 3 cut(s) 131, 132, 1414
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 4 cut(s) 16, 76, 367, 466
AvaI CYCGRG 1 cut(s) 434
AvaII GGWCC 1 cut(s) 1414
BaeGI GKGCMC 1 cut(s) 135
BalI TGGCCA 1 cut(s) 306
BanII GRGCYC 2 cut(s) 135, 1266
BauI CACGAG 1 cut(s) 557
BbvI GCAGC 4 cut(s) 931, 1007, 1344, 1450
BccI CCATC 4 cut(s) 143, 204, 236, 1206
BceAI ACGGC 5 cut(s) 52, 206, 782, 851, 1462
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BciT130I CCWGG 1 cut(s) 812
BciVI GTATCC 1 cut(s) 1286
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 3 cut(s) 287, 967, 1035
BfaI CTAG 1 cut(s) 1136
BfmI CTRYAG 1 cut(s) 846
BfuI GTATCC 1 cut(s) 1286
BisI GCNGC 5 cut(s) 40, 945, 996, 1358, 1464
BlsI GCNGC 5 cut(s) 41, 946, 997, 1359, 1465
Bme1390I CCNGG 2 cut(s) 85, 812
Bme18I GGWCC 1 cut(s) 1414
BmeRI GACNNNNNGTC 1 cut(s) 1023
BmeT110I CYCGRG 1 cut(s) 434
BmgBI CACGTC 2 cut(s) 451, 986
BmgT120I GGNCC 3 cut(s) 131, 132, 1414
BmiI GGNNCC 3 cut(s) 133, 319, 1265
BmrFI CCNGG 2 cut(s) 85, 812
BmsI GCATC 3 cut(s) 70, 675, 792
BpmI CTGGAG 2 cut(s) 194, 833
BpuEI CTTGAG 1 cut(s) 809
BpuMI CCSGG 1 cut(s) 85
BsaAI YACGTR 2 cut(s) 625, 1015
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 967
BsaWI WCCGGW 1 cut(s) 1416
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 4 cut(s) 11, 1181, 1227, 1391
Bse3DI GCAATG 2 cut(s) 654, 927
BseBI CCWGG 1 cut(s) 812
BseGI GGATG 4 cut(s) 85, 448, 1217, 1425
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 2 cut(s) 654, 927
BseNI ACTGG 4 cut(s) 11, 1181, 1227, 1391
BseRI GAGGAG 1 cut(s) 1469
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 4 cut(s) 931, 1007, 1344, 1450
BseYI CCCAGC 2 cut(s) 128, 1433
BsgI GTGCAG 2 cut(s) 232, 669
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 4 cut(s) 133, 195, 306, 852
BsiEI CGRYCG 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 5 cut(s) 62, 85, 321, 778, 1417
BslFI GGGAC 2 cut(s) 1233, 1351
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 3 cut(s) 287, 967, 1035
BsmBI CGTCTC 1 cut(s) 287
BsmFI GGGAC 2 cut(s) 1233, 1351
BsmI GAATGC 1 cut(s) 609
BsnI GGCC 4 cut(s) 133, 195, 306, 852
Bso31I GGTCTC 1 cut(s) 967
BsoBI CYCGRG 1 cut(s) 434
Bsp120I GGGCCC 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 135, 1266
Bsp1407I TGTACA 2 cut(s) 592, 1095
Bsp143I GATC 3 cut(s) 356, 363, 1062
BspACI CCGC 8 cut(s) 39, 219, 414, 491, 795, 1209, 1268, 1335
BspANI GGCC 4 cut(s) 133, 195, 306, 852
BspLI GGNNCC 3 cut(s) 133, 319, 1265
BspPI GGATC 1 cut(s) 371
BspQI GCTCTTC 1 cut(s) 1350
BspTNI GGTCTC 1 cut(s) 967
BsrBI CCGCTC 1 cut(s) 1270
BsrDI GCAATG 2 cut(s) 654, 927
BsrFI RCCGGY 1 cut(s) 61
BsrGI TGTACA 2 cut(s) 592, 1095
BsrI ACTGG 4 cut(s) 11, 1181, 1227, 1391
BssAI RCCGGY 1 cut(s) 61
BssMI GATC 3 cut(s) 356, 363, 1062
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 557
Bst2BI CACGAG 1 cut(s) 557
Bst2UI CCWGG 1 cut(s) 812
Bst4CI ACNGT 2 cut(s) 911, 1021
Bst6I CTCTTC 2 cut(s) 620, 1350
BstACI GRCGYC 1 cut(s) 8
BstAPI GCANNNNNTGC 2 cut(s) 656, 1332
BstAUI TGTACA 2 cut(s) 592, 1095
BstBAI YACGTR 2 cut(s) 625, 1015
BstC8I GCNNGC 3 cut(s) 564, 652, 888
BstDEI CTNAG 1 cut(s) 857
BstF5I GGATG 4 cut(s) 85, 448, 1217, 1425
BstKTI GATC 3 cut(s) 359, 366, 1065
BstMAI GTCTC 3 cut(s) 287, 967, 1035
BstMBI GATC 3 cut(s) 356, 363, 1062
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 6 cut(s) 162, 317, 436, 461, 656, 1332
BstNI CCWGG 1 cut(s) 812
BstNSI RCATGY 2 cut(s) 337, 352
BstSCI CCNGG 2 cut(s) 83, 810
BstSFI CTRYAG 1 cut(s) 846
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 4 cut(s) 931, 1007, 1344, 1450
BsuI GTATCC 1 cut(s) 1286
BsuRI GGCC 4 cut(s) 133, 195, 306, 852
BtgZI GCGATG 1 cut(s) 121
BtrI CACGTC 2 cut(s) 451, 986
BtsCI GGATG 4 cut(s) 85, 448, 1217, 1425
BtsI GCAGTG 2 cut(s) 17, 36
BtsIMutI CAGTG 3 cut(s) 17, 18, 36
Cac8I GCNNGC 3 cut(s) 564, 652, 888
CaiI CAGNNNCTG 2 cut(s) 1033, 1222
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 131, 132, 1414
CpoI CGGWCCG 1 cut(s) 1414
CseI GACGC 3 cut(s) 16, 304, 1162
Csp6I GTAC 4 cut(s) 593, 869, 1096, 1370
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CspI CGGWCCG 1 cut(s) 1414
CviAII CATG 9 cut(s) 50, 184, 268, 277, 334, 349, 360, 1054, 1327
CviQI GTAC 4 cut(s) 593, 869, 1096, 1370
DdeI CTNAG 1 cut(s) 857
DpnI GATC 3 cut(s) 358, 365, 1064
DpnII GATC 3 cut(s) 356, 363, 1062
DraIII CACNNNGTG 1 cut(s) 31
DriI GACNNNNNGTC 1 cut(s) 1023
EaeI YGGCCR 2 cut(s) 193, 304
Eam1104I CTCTTC 2 cut(s) 620, 1350
Eam1105I GACNNNNNGTC 1 cut(s) 1023
EarI CTCTTC 2 cut(s) 620, 1350
EciI GGCGGA 4 cut(s) 208, 403, 784, 1224
Eco24I GRGCYC 2 cut(s) 135, 1266
Eco31I GGTCTC 1 cut(s) 967
Eco47I GGWCC 1 cut(s) 1414
Eco57I CTGAAG 2 cut(s) 58, 521
Eco88I CYCGRG 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 810
EcoT38I GRGCYC 2 cut(s) 135, 1266
Esp3I CGTCTC 1 cut(s) 287
FaeI CATG 9 cut(s) 53, 187, 271, 280, 337, 352, 363, 1057, 1330
FaqI GGGAC 2 cut(s) 1233, 1351
FatI CATG 9 cut(s) 49, 183, 267, 276, 333, 348, 359, 1053, 1326
FauI CCCGC 2 cut(s) 1275, 1328
FauNDI CATATG 1 cut(s) 764
FblI GTMKAC 1 cut(s) 1011
Fnu4HI GCNGC 5 cut(s) 40, 945, 996, 1358, 1464
FokI GGATG 4 cut(s) 92, 455, 1224, 1432
FriOI GRGCYC 2 cut(s) 135, 1266
Fsp4HI GCNGC 5 cut(s) 40, 945, 996, 1358, 1464
FspBI CTAG 1 cut(s) 1136
GluI GCNGC 5 cut(s) 40, 945, 996, 1358, 1464
GsaI CCCAGC 2 cut(s) 132, 1437
GsuI CTGGAG 2 cut(s) 194, 833
HaeIII GGCC 4 cut(s) 133, 195, 306, 852
HapII CCGG 5 cut(s) 62, 85, 321, 778, 1417
HgaI GACGC 3 cut(s) 16, 304, 1162
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 9 cut(s) 53, 187, 271, 280, 337, 352, 363, 1057, 1330
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HindIII AAGCTT 2 cut(s) 309, 428
HinfI GANTC 5 cut(s) 791, 832, 881, 936, 1044
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 5 cut(s) 62, 85, 321, 778, 1417
HphI GGTGA 4 cut(s) 16, 76, 367, 466
Hpy166II GTNNAC 8 cut(s) 34, 331, 346, 375, 732, 1012, 1098, 1237
Hpy188I TCNGA 5 cut(s) 203, 317, 1043, 1151, 1205
Hpy188III TCNNGA 1 cut(s) 1066
Hpy8I GTNNAC 8 cut(s) 34, 331, 346, 375, 732, 1012, 1098, 1237
Hpy99I CGWCG 1 cut(s) 1454
HpyAV CCTTC 7 cut(s) 151, 262, 520, 545, 719, 1289, 1303
HpyCH4III ACNGT 2 cut(s) 911, 1021
HpyCH4IV ACGT 5 cut(s) 327, 450, 624, 985, 1014
HpyCH4V TGCA 9 cut(s) 156, 249, 352, 486, 650, 659, 720, 1053, 1117
HpyF10VI GCNNNNNNNGC 6 cut(s) 162, 317, 436, 461, 656, 1332
HpyF3I CTNAG 1 cut(s) 857
HpySE526I ACGT 5 cut(s) 327, 450, 624, 985, 1014
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 9 cut(s) 53, 187, 271, 280, 337, 352, 363, 1057, 1330
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 3 cut(s) 356, 363, 1062
LguI GCTCTTC 1 cut(s) 1350
LmnI GCTCC 2 cut(s) 317, 1269
Lsp1109I GCAGC 4 cut(s) 931, 1007, 1344, 1450
LweI GCATC 3 cut(s) 70, 675, 792
MaeI CTAG 1 cut(s) 1136
MaeII ACGT 5 cut(s) 327, 450, 624, 985, 1014
MaeIII GTNAC 4 cut(s) 4, 1015, 1153, 1247
MalI GATC 3 cut(s) 358, 365, 1064
MbiI CCGCTC 1 cut(s) 1270
MboI GATC 3 cut(s) 356, 363, 1062
MboII GAAGA 5 cut(s) 400, 607, 1136, 1337, 1435
MhlI GDGCHC 2 cut(s) 135, 1266
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 7 cut(s) 123, 597, 681, 901, 1112, 1140, 1314
MluNI TGGCCA 1 cut(s) 306
MlyI GAGTC 3 cut(s) 800, 826, 875
MmeI TCCRAC 2 cut(s) 990, 1201
MnlI CCTC 8 cut(s) 60, 218, 401, 1102, 1199, 1316, 1390, 1447
Mox20I TGGCCA 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 607
MscI TGGCCA 1 cut(s) 306
MseI TTAA 2 cut(s) 330, 899
MslI CAYNNNNRTG 2 cut(s) 623, 1058
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 381
MspI CCGG 5 cut(s) 62, 85, 321, 778, 1417
MspR9I CCNGG 2 cut(s) 85, 812
Mva1269I GAATGC 1 cut(s) 609
MvaI CCWGG 1 cut(s) 812
MwoI GCNNNNNNNGC 6 cut(s) 162, 317, 436, 461, 656, 1332
NciI CCSGG 1 cut(s) 85
NdeI CATATG 1 cut(s) 764
NdeII GATC 3 cut(s) 356, 363, 1062
NlaIII CATG 9 cut(s) 53, 187, 271, 280, 337, 352, 363, 1057, 1330
NlaIV GGNNCC 3 cut(s) 133, 319, 1265
NmeAIII GCCGAG 1 cut(s) 318
NmuCI GTSAC 3 cut(s) 4, 1015, 1153
NspI RCATGY 2 cut(s) 337, 352
PciSI GCTCTTC 1 cut(s) 1350
PcsI WCGNNNNNNNCGW 1 cut(s) 749
PctI GAATGC 1 cut(s) 609
PdmI GAANNNNTTC 1 cut(s) 607
PfeI GAWTC 2 cut(s) 936, 1044
PkrI GCNGC 5 cut(s) 41, 946, 997, 1359, 1465
PleI GAGTC 3 cut(s) 799, 826, 875
PpsI GAGTC 3 cut(s) 799, 826, 875
Ppu21I YACGTR 2 cut(s) 625, 1015
Psp6I CCWGG 1 cut(s) 810
PspFI CCCAGC 2 cut(s) 128, 1433
PspGI CCWGG 1 cut(s) 810
PspN4I GGNNCC 3 cut(s) 133, 319, 1265
PspOMI GGGCCC 1 cut(s) 131
PspPI GGNCC 3 cut(s) 131, 132, 1414
PstNI CAGNNNCTG 2 cut(s) 1033, 1222
PvuII CAGCTG 1 cut(s) 381
RsaI GTAC 4 cut(s) 594, 870, 1097, 1371
RsaNI GTAC 4 cut(s) 593, 869, 1096, 1370
RseI CAYNNNNRTG 2 cut(s) 623, 1058
Rsr2I CGGWCCG 1 cut(s) 1414
RsrII CGGWCCG 1 cut(s) 1414
SapI GCTCTTC 1 cut(s) 1350
SaqAI TTAA 2 cut(s) 330, 899
SatI GCNGC 5 cut(s) 40, 945, 996, 1358, 1464
Sau3AI GATC 3 cut(s) 356, 363, 1062
Sau96I GGNCC 3 cut(s) 131, 132, 1414
SchI GAGTC 3 cut(s) 800, 826, 875
ScrFI CCNGG 2 cut(s) 85, 812
SduI GDGCHC 2 cut(s) 135, 1266
SfaNI GCATC 3 cut(s) 70, 675, 792
SfcI CTRYAG 1 cut(s) 846
SinI GGWCC 1 cut(s) 1414
SmiMI CAYNNNNRTG 2 cut(s) 623, 1058
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 7 cut(s) 123, 597, 681, 901, 1112, 1140, 1314
SsiI CCGC 8 cut(s) 39, 219, 414, 491, 795, 1209, 1268, 1335
SspI AATATT 2 cut(s) 700, 1004
SspMI CTAG 1 cut(s) 1136
StyD4I CCNGG 2 cut(s) 83, 810
TaaI ACNGT 2 cut(s) 911, 1021
TaiI ACGT 5 cut(s) 330, 453, 627, 988, 1017
TaqI TCGA 1 cut(s) 630
TasI AATT 7 cut(s) 123, 597, 681, 901, 1112, 1140, 1314
TatI WGTACW 3 cut(s) 592, 1095, 1369
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 936, 1044
Tru1I TTAA 2 cut(s) 330, 899
Tru9I TTAA 2 cut(s) 330, 899
TscAI CASTG 3 cut(s) 18, 24, 36
TseFI GTSAC 3 cut(s) 4, 1015, 1153
TseI GCWGC 4 cut(s) 944, 995, 1357, 1463
Tsp45I GTSAC 3 cut(s) 4, 1015, 1153
TspDTI ATGAA 6 cut(s) 117, 256, 607, 725, 919, 1436
TspGWI ACGGA 2 cut(s) 229, 1427
TspRI CASTG 3 cut(s) 18, 24, 36
VpaK11BI GGWCC 1 cut(s) 1414
XapI RAATTY 2 cut(s) 901, 1314
XceI RCATGY 2 cut(s) 337, 352
XmiI GTMKAC 1 cut(s) 1011
XmnI GAANNNNTTC 1 cut(s) 607
XspI CTAG 1 cut(s) 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.