Rh3BG010100

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
647421 .. 648137
717 bp
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UTR
Exon/CDS
Intron
Rh3BG010100.1

Sequence Viewer

Length: 318 bp
ATGGTTGTTATCTTGATAACCAAAGACTACTTCTCTGTCATCTTCACAAGCAACGCCGAATTGCAAGCAGCTGTTTCAAAGCTAGCATGGCTTCTCGGAATCACCTTGGTTCTCAACAGTGTCCAGCCTGTGATTTCAGGTGTTGCTATCGGAGACCTGGGAGTGACACAAATTTGGGGAGGCATGATATGTGGGACTGAAGACCTTGCTGCTCATTATAGTACTTTACAGAACCAACTGGAACAAGGAGGTGGAAGAAAGTTCAGACCGAATGAAGAAATGGGGAGGACAAGATATAAAAGGCGAGACAGTAGCTGA
Functional Annotation

Protein Analysis

105

Amino Acids

11.5

Weight (kDa)

7.89

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 223
AgsI TTSAA 1 cut(s) 78
AjnI CCWGG 1 cut(s) 156
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 3 cut(s) 71, 82, 315
AluI AGCT 3 cut(s) 71, 82, 315
Alw26I GTCTC 2 cut(s) 147, 300
AlwNI CAGNNNCTG 1 cut(s) 315
ApeKI GCWGC 2 cut(s) 68, 209
ApoI RAATTY 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 94
AsuNHI GCTAGC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 80, 196
BciT130I CCWGG 1 cut(s) 158
BcoDI GTCTC 2 cut(s) 147, 300
BfaI CTAG 1 cut(s) 83
BisI GCNGC 2 cut(s) 69, 210
BlsI GCNGC 2 cut(s) 70, 211
BmcAI AGTACT 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 158
BmtI GCTAGC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 105, 157
Bse1I ACTGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 105, 157
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 80, 196
BslFI GGGAC 1 cut(s) 208
BsmAI GTCTC 2 cut(s) 147, 300
BsmFI GGGAC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 147
BspOI GCTAGC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 147
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 105, 157
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 119, 311
BstC8I GCNNGC 2 cut(s) 66, 84
BstMAI GTCTC 2 cut(s) 147, 300
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 80, 196
BstV2I GAAGAC 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 66, 84
CaiI CAGNNNCTG 1 cut(s) 315
Csp6I GTAC 1 cut(s) 222
CviAII CATG 2 cut(s) 87, 184
CviJI RGCY 5 cut(s) 71, 82, 91, 127, 315
CviKI_1 RGCY 5 cut(s) 71, 82, 91, 127, 315
CviQI GTAC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 2 cut(s) 90, 187
FaiI YATR 5 cut(s) 88, 185, 190, 219, 297
FaqI GGGAC 1 cut(s) 208
FatI CATG 2 cut(s) 86, 183
Fnu4HI GCNGC 2 cut(s) 69, 210
Fsp4HI GCNGC 2 cut(s) 69, 210
FspBI CTAG 1 cut(s) 83
GluI GCNGC 2 cut(s) 69, 210
Hin1II CATG 2 cut(s) 90, 187
HinfI GANTC 1 cut(s) 99
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 3 cut(s) 98, 152, 266
Hpy188III TCNNGA 1 cut(s) 13
HpyCH4III ACNGT 2 cut(s) 119, 311
HpyCH4V TGCA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
Hsp92II CATG 2 cut(s) 90, 187
LpnPI CCDG 6 cut(s) 123, 137, 141, 143, 170, 224
Lsp1109I GCAGC 2 cut(s) 80, 196
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 4 cut(s) 34, 212, 267, 287
MluCI AATT 2 cut(s) 59, 171
MnlI CCTC 3 cut(s) 173, 242, 279
MspA1I CMGCKG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 88
NheI GCTAGC 1 cut(s) 82
NlaIII CATG 2 cut(s) 90, 187
NmuCI GTSAC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 2 cut(s) 70, 211
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PstNI CAGNNNCTG 1 cut(s) 315
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SatI GCNGC 2 cut(s) 69, 210
ScaI AGTACT 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 158
SetI ASST 8 cut(s) 73, 84, 107, 142, 159, 207, 253, 317
Sse9I AATT 2 cut(s) 59, 171
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 119, 311
TaqII GACCGA 1 cut(s) 283
TasI AATT 2 cut(s) 59, 171
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 1 cut(s) 99
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 2 cut(s) 68, 209
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 1 cut(s) 124
XapI RAATTY 1 cut(s) 171
XspI CTAG 1 cut(s) 83
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.