Rroxscaffold_4G00280810

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000970
Physical Location & Seq
Forward (+)
3244184 .. 3246574
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280810.1

Sequence Viewer

Length: 1590 bp
ATGGAGGAGCCATTACTCGACGCAGCTGCTGCAAATTCCGAGTTCAACCACAAGGCTTTGTGGGGTGATGGCAAAGAAGACTACAAGCCGGTGAGGAGCTTTCCTGAGTTTCGGTCTATGTTTTGGATAGAGACAGTGAAGCTTTGGAAACTAGCAGGTCCTTCAATGATCGGATTATTGGCCATGTATGGGACAAATGCCGTCATCAGCGTGTTTGCTGGTCATATTGGAACCATTGAGCTCTCCGCGATCTCCATTTCTCTCTCCGTCATTTCCACCTTCTCTTATGGATTCTTGCTCGGCATGGGGAGTGCTTTGGAGACCTTGGCTGGACAGGCGTTTGGTGCAGGACAGATTCATATGCTTGGGATATACATGCAGCGCTCATGTATAGTCCTACTTGTAACTTGCTTCCTCCTGTTGCCATTTTACATCTTTGCCACTCCCATTTTAAAGCTATTAGGCCAAGAAGATGACATAGCCGATCTCGCTGGAGAGTTCACACTGCAAATAATTCCTCAGTTGTTCTCACTTGCCATTAACTTTCCTGCTCAGAAGTTCCTTCAGGCTCAGAGAAAGCTCAAAGTCATGACGTGGATTTCGGTGGTGGCATTGATCATACACGTTGGGCTACTTTTCTTCTTCATTTTTGGGTTAGATTGGGGTACCTTAGGTGCAGCTGTGGCATATAATATTACCAGATGGGGCATTGCAATTGCTCAAGTTGTATATATTATGGTCTGGTGCAATGAGGGTTGGACAGGGTTTTCATGGTTGGCATTCAAGGATATGTGGTCCTTTGTTAGGCTTTCAATTGCCTCTGCTGTCATGCTTTGCCTTGAGATATGGTACTTCATGAGTATGATGCTTCTTACTGGCAACCTAAACGATGCAATTCTAGCAGTTAGTTCCCTTTCTATTTGCCTCAACATTAACGGGTGGGAAATAATGTTGTTTGTTGGAATAAATGTTGCTATAAGTGTTCGAGTATCGAATGAGCTTGGCTTAGGACGCCCAAGAGCGGCCAAATATGCAGTCTATGTGACAGTATTTCAGTCTTTCCTAATAGGGATTCTTTTCATGATTCTTATCTTGTTATTCAAAGATAGCTTCTCTGCACTTTTTACTACTGACAAGGAGCTGCAACAAGCGGTTGCACACCTAGCATACCTTCTCGGCGCAACTATGTTGCTCAACAGTGTCCAGCCAGTAATATCAGGTGTTGCGGTTGGCGGTGGATGGCAGGCAACCGTGGCATATATAAACTTGGGTTGTTACTACATTTTTGGAATTCCTCTCGGATACTTGCTTAGTCACGTCGCAGATTTCGGAGTGATGGTATTTTACACATTATTGACTTCAAAGTACTTACTACCATTTCCGATCTTCACCAGTGTACATGAAGTCTTTCATTTGATCAATGCAGGGACTTTGGGGGGTATGATATGTGGAACTGCTCTTCAGACATTACTTCTTTTATTTGTGCTTTACAAAACCAACTGGAACAAAGAGGTGGAGCAAGCATCAACACGCGTGCAGAAGTGGGGATTGGATAACAAAACAGAGACTACAGCTGAAAGTGCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

529

Amino Acids

58.44

Weight (kDa)

5.92

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 54 - 211 1.7e-29 MatE
MatE PF01554 274 - 436 3.4e-27 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 146
Acc65I GGTACC 1 cut(s) 665
AccB1I GGYRCC 1 cut(s) 665
AccBSI CCGCTC 1 cut(s) 1022
AccII CGCG 2 cut(s) 248, 1533
AciI CCGC 5 cut(s) 246, 1022, 1151, 1226, 1233
AcoI YGGCCR 2 cut(s) 180, 1023
AcsI RAATTY 2 cut(s) 34, 1290
AcuI CTGAAG 2 cut(s) 548, 1445
AcyI GRCGYC 1 cut(s) 1012
AfaI GTAC 4 cut(s) 667, 851, 1367, 1398
AfeI AGCGCT 1 cut(s) 383
AfiI CCNNNNNNNGG 3 cut(s) 189, 804, 1021
AflIII ACRYGT 2 cut(s) 622, 1531
AgsI TTSAA 6 cut(s) 46, 165, 784, 813, 1102, 1362
AjiI CACGTC 2 cut(s) 594, 1318
AjuI GAANNNNNNNTTGG 2 cut(s) 1532, 1564
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 3 cut(s) 125, 314, 1559
AlwNI CAGNNNCTG 1 cut(s) 29
Aor51HI AGCGCT 1 cut(s) 383
AoxI GGCC 3 cut(s) 180, 463, 1023
ApeKI GCWGC 6 cut(s) 23, 26, 29, 379, 677, 1141
ApoI RAATTY 2 cut(s) 34, 1290
ArsI GACNNNNNNTTYG 4 cut(s) 583, 615, 1020, 1052
Asp700I GAANNNNTTC 1 cut(s) 1407
Asp718I GGTACC 1 cut(s) 665
AspLEI GCGC 2 cut(s) 384, 1181
AspS9I GGNCC 2 cut(s) 158, 795
AsuHPI GGTGA 3 cut(s) 77, 103, 1381
AvaII GGWCC 2 cut(s) 158, 795
AxyI CCTNAGG 1 cut(s) 670
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 1 cut(s) 665
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 6 cut(s) 13, 16, 35, 391, 689, 1128
BccI CCATC 4 cut(s) 62, 696, 1233, 1330
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciVI GTATCC 1 cut(s) 1295
BclI TGATCA 2 cut(s) 615, 1416
BcoDI GTCTC 3 cut(s) 125, 314, 1559
BfaI CTAG 3 cut(s) 152, 899, 1163
BfmI CTRYAG 1 cut(s) 1569
BfoI RGCGCY 1 cut(s) 385
BfuAI ACCTGC 1 cut(s) 146
BfuI GTATCC 1 cut(s) 1295
BisI GCNGC 7 cut(s) 24, 27, 30, 380, 678, 1023, 1142
BlsI GCNGC 7 cut(s) 25, 28, 31, 381, 679, 1024, 1143
BmcAI AGTACT 1 cut(s) 1367
Bme18I GGWCC 2 cut(s) 158, 795
BmgBI CACGTC 2 cut(s) 594, 1318
BmgT120I GGNCC 2 cut(s) 158, 795
BmiI GGNNCC 3 cut(s) 9, 232, 667
BmsI GCATC 3 cut(s) 855, 880, 1532
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 1006
BpuEI CTTGAG 2 cut(s) 705, 860
BsaBI GATNNNNATC 1 cut(s) 1088
BsaHI GRCGYC 1 cut(s) 1012
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 324, 1251
BsaXI ACNNNNNCTCC 2 cut(s) 1323, 1353
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 804, 1021
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 4 cut(s) 880, 1208, 1392, 1505
Bse21I CCTNAGG 1 cut(s) 670
Bse3DI GCAATG 2 cut(s) 708, 754
Bse8I GATNNNNATC 1 cut(s) 1088
BseDI CCNNGG 2 cut(s) 324, 1251
BseGI GGATG 1 cut(s) 1244
BseJI GATNNNNATC 1 cut(s) 1088
BseLI CCNNNNNNNGG 3 cut(s) 189, 804, 1021
BseMI GCAATG 2 cut(s) 708, 754
BseMII CTCAG 4 cut(s) 96, 533, 566, 584
BseNI ACTGG 4 cut(s) 880, 1208, 1392, 1505
BseRI GAGGAG 2 cut(s) 20, 109
BseXI GCAGC 6 cut(s) 13, 16, 35, 391, 689, 1128
BsgI GTGCAG 4 cut(s) 366, 696, 1101, 1556
Bsh1236I CGCG 2 cut(s) 248, 1533
BshFI GGCC 3 cut(s) 182, 465, 1025
BshNI GGYRCC 1 cut(s) 665
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 2 cut(s) 205, 1441
BslI CCNNNNNNNGG 3 cut(s) 189, 804, 1021
BsmAI GTCTC 3 cut(s) 125, 314, 1559
BsmFI GGGAC 2 cut(s) 205, 1441
BsmI GAATGC 1 cut(s) 779
BsnI GGCC 3 cut(s) 182, 465, 1025
Bso31I GGTCTC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 1396
Bsp143I GATC 6 cut(s) 168, 249, 484, 615, 1383, 1416
BspACI CCGC 5 cut(s) 246, 1022, 1151, 1226, 1233
BspANI GGCC 3 cut(s) 182, 465, 1025
BspCNI CTCAG 4 cut(s) 97, 532, 565, 583
BspFNI CGCG 2 cut(s) 248, 1533
BspHI TCATGA 3 cut(s) 588, 855, 1080
BspLI GGNNCC 3 cut(s) 9, 232, 667
BspMI ACCTGC 1 cut(s) 146
BspQI GCTCTTC 1 cut(s) 1464
BspT107I GGYRCC 1 cut(s) 665
BspTNI GGTCTC 1 cut(s) 314
BsrBI CCGCTC 1 cut(s) 1022
BsrDI GCAATG 2 cut(s) 708, 754
BsrFI RCCGGY 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 1396
BsrI ACTGG 4 cut(s) 880, 1208, 1392, 1505
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 324, 1251
BssMI GATC 6 cut(s) 168, 249, 484, 615, 1383, 1416
BssNI GRCGYC 1 cut(s) 1012
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 4 cut(s) 136, 1048, 1199, 1252
Bst6I CTCTTC 1 cut(s) 1464
BstACI GRCGYC 1 cut(s) 1012
BstAPI GCANNNNNTGC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 1396
BstC8I GCNNGC 3 cut(s) 1245, 1521, 1535
BstDEI CTNAG 7 cut(s) 105, 519, 552, 570, 670, 1006, 1310
BstDSI CCRYGG 1 cut(s) 1251
BstENI CCTNNNNNAGG 1 cut(s) 802
BstF5I GGATG 1 cut(s) 1244
BstFNI CGCG 2 cut(s) 248, 1533
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 2 cut(s) 384, 1181
BstKTI GATC 6 cut(s) 171, 252, 487, 618, 1386, 1419
BstMAI GTCTC 3 cut(s) 125, 314, 1559
BstMBI GATC 6 cut(s) 168, 249, 484, 615, 1383, 1416
BstNSI RCATGY 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 1569
BstUI CGCG 2 cut(s) 248, 1533
BstV1I GCAGC 6 cut(s) 13, 16, 35, 391, 689, 1128
BstV2I GAAGAC 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 670
BsuI GTATCC 1 cut(s) 1295
BsuRI GGCC 3 cut(s) 182, 465, 1025
BtgI CCRYGG 1 cut(s) 1251
BtrI CACGTC 2 cut(s) 594, 1318
BtsCI GGATG 1 cut(s) 1244
BtsI GCAGTG 1 cut(s) 503
BtsIMutI CAGTG 4 cut(s) 141, 503, 1204, 1399
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 3 cut(s) 1245, 1521, 1535
CaiI CAGNNNCTG 1 cut(s) 29
CciI TCATGA 3 cut(s) 588, 855, 1080
CfoI GCGC 2 cut(s) 384, 1181
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 158, 795
CseI GACGC 2 cut(s) 29, 1020
Csp6I GTAC 4 cut(s) 666, 850, 1366, 1397
CviQI GTAC 4 cut(s) 666, 850, 1366, 1397
DdeI CTNAG 7 cut(s) 105, 519, 552, 570, 670, 1006, 1310
DpnI GATC 6 cut(s) 170, 251, 486, 617, 1385, 1418
DpnII GATC 6 cut(s) 168, 249, 484, 615, 1383, 1416
DraI TTTAAA 1 cut(s) 453
EaeI YGGCCR 2 cut(s) 180, 1023
Eam1104I CTCTTC 1 cut(s) 1464
EarI CTCTTC 1 cut(s) 1464
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 2 cut(s) 158, 795
Eco47III AGCGCT 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 548, 1445
Eco81I CCTNAGG 1 cut(s) 670
EcoICRI GAGCTC 1 cut(s) 241
EcoNI CCTNNNNNAGG 1 cut(s) 802
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 1290
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 324
FaqI GGGAC 2 cut(s) 205, 1441
FauNDI CATATG 1 cut(s) 360
FbaI TGATCA 2 cut(s) 615, 1416
Fnu4HI GCNGC 7 cut(s) 24, 27, 30, 380, 678, 1023, 1142
FokI GGATG 1 cut(s) 1251
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 7 cut(s) 24, 27, 30, 380, 678, 1023, 1142
FspBI CTAG 3 cut(s) 152, 899, 1163
GlaI GCGC 2 cut(s) 383, 1180
GluI GCNGC 7 cut(s) 24, 27, 30, 380, 678, 1023, 1142
GsuI CTGGAG 1 cut(s) 513
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 3 cut(s) 182, 465, 1025
HapII CCGG 1 cut(s) 89
HgaI GACGC 2 cut(s) 29, 1020
HhaI GCGC 2 cut(s) 384, 1181
Hin1I GRCGYC 1 cut(s) 1012
Hin6I GCGC 2 cut(s) 382, 1179
HinP1I GCGC 2 cut(s) 382, 1179
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 4 cut(s) 291, 355, 1072, 1084
HpaII CCGG 1 cut(s) 89
HphI GGTGA 3 cut(s) 77, 103, 1381
Hpy166II GTNNAC 2 cut(s) 501, 1397
Hpy188I TCNGA 8 cut(s) 40, 173, 555, 573, 1301, 1331, 1383, 1464
Hpy188III TCNNGA 4 cut(s) 104, 589, 856, 1081
Hpy8I GTNNAC 2 cut(s) 501, 1397
Hpy99I CGWCG 2 cut(s) 23, 1322
HpyAV CCTTC 4 cut(s) 171, 289, 572, 1181
HpyCH4III ACNGT 4 cut(s) 136, 1048, 1199, 1252
HpyCH4IV ACGT 3 cut(s) 593, 624, 1317
HpyF3I CTNAG 7 cut(s) 105, 519, 552, 570, 670, 1006, 1310
HpySE526I ACGT 3 cut(s) 593, 624, 1317
Hsp92I GRCGYC 1 cut(s) 1012
HspAI GCGC 2 cut(s) 382, 1179
KpnI GGTACC 1 cut(s) 669
Ksp22I TGATCA 2 cut(s) 615, 1416
Kzo9I GATC 6 cut(s) 168, 249, 484, 615, 1383, 1416
LguI GCTCTTC 1 cut(s) 1464
LmnI GCTCC 4 cut(s) 7, 96, 1138, 1516
Lsp1109I GCAGC 6 cut(s) 13, 16, 35, 391, 689, 1128
LweI GCATC 3 cut(s) 855, 880, 1532
MaeI CTAG 3 cut(s) 152, 899, 1163
MaeII ACGT 3 cut(s) 593, 624, 1317
MaeIII GTNAC 4 cut(s) 403, 1042, 1274, 1313
MalI GATC 6 cut(s) 170, 251, 486, 617, 1385, 1418
MbiI CCGCTC 1 cut(s) 1022
MboI GATC 6 cut(s) 168, 249, 484, 615, 1383, 1416
MboII GAAGA 6 cut(s) 89, 482, 631, 634, 1378, 1451
MfeI CAATTG 2 cut(s) 714, 813
MhlI GDGCHC 1 cut(s) 243
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 6 cut(s) 34, 513, 714, 813, 894, 1290
MluI ACGCGT 1 cut(s) 1531
MluNI TGGCCA 1 cut(s) 182
MmeI TCCRAC 2 cut(s) 737, 940
MnlI CCTC 8 cut(s) 87, 425, 528, 745, 829, 935, 1305, 1504
Mox20I TGGCCA 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 1407
MscI TGGCCA 1 cut(s) 182
MseI TTAA 3 cut(s) 452, 540, 933
MslI CAYNNNNRTG 2 cut(s) 209, 860
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 3 cut(s) 26, 680, 1574
MspI CCGG 1 cut(s) 89
MunI CAATTG 2 cut(s) 714, 813
Mva1269I GAATGC 1 cut(s) 779
MvnI CGCG 2 cut(s) 248, 1533
NdeI CATATG 1 cut(s) 360
NdeII GATC 6 cut(s) 168, 249, 484, 615, 1383, 1416
NlaIV GGNNCC 3 cut(s) 9, 232, 667
NmeAIII GCCGAG 2 cut(s) 279, 1155
NmuCI GTSAC 2 cut(s) 1042, 1313
NspI RCATGY 1 cut(s) 379
PagI TCATGA 3 cut(s) 588, 855, 1080
PciSI GCTCTTC 1 cut(s) 1464
PctI GAATGC 1 cut(s) 779
PdmI GAANNNNTTC 1 cut(s) 1407
PfeI GAWTC 4 cut(s) 291, 355, 1072, 1084
PkrI GCNGC 7 cut(s) 25, 28, 31, 381, 679, 1024, 1143
PpuMI RGGWCCY 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 158
PspN4I GGNNCC 3 cut(s) 9, 232, 667
PspPI GGNCC 2 cut(s) 158, 795
PspPPI RGGWCCY 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 29
PvuII CAGCTG 3 cut(s) 26, 680, 1574
RsaI GTAC 4 cut(s) 667, 851, 1367, 1398
RsaNI GTAC 4 cut(s) 666, 850, 1366, 1397
RseI CAYNNNNRTG 2 cut(s) 209, 860
SacI GAGCTC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 1464
SaqAI TTAA 3 cut(s) 452, 540, 933
SatI GCNGC 7 cut(s) 24, 27, 30, 380, 678, 1023, 1142
Sau3AI GATC 6 cut(s) 168, 249, 484, 615, 1383, 1416
Sau96I GGNCC 2 cut(s) 158, 795
ScaI AGTACT 1 cut(s) 1367
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 3 cut(s) 855, 880, 1532
SfcI CTRYAG 1 cut(s) 1569
SinI GGWCC 2 cut(s) 158, 795
SmiMI CAYNNNNRTG 2 cut(s) 209, 860
SmlI CTYRAG 2 cut(s) 720, 839
SmoI CTYRAG 2 cut(s) 720, 839
Sse9I AATT 6 cut(s) 34, 513, 714, 813, 894, 1290
SsiI CCGC 5 cut(s) 246, 1022, 1151, 1226, 1233
SspI AATATT 1 cut(s) 694
SspMI CTAG 3 cut(s) 152, 899, 1163
SstI GAGCTC 1 cut(s) 243
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 4 cut(s) 136, 1048, 1199, 1252
TaiI ACGT 3 cut(s) 596, 627, 1320
TaqI TCGA 3 cut(s) 18, 985, 992
TaqII GACCGA 1 cut(s) 102
TasI AATT 6 cut(s) 34, 513, 714, 813, 894, 1290
TatI WGTACW 2 cut(s) 1365, 1396
TauI GCSGC 1 cut(s) 1025
TfiI GAWTC 4 cut(s) 291, 355, 1072, 1084
Tru1I TTAA 3 cut(s) 452, 540, 933
Tru9I TTAA 3 cut(s) 452, 540, 933
TscAI CASTG 4 cut(s) 141, 510, 1204, 1399
TseFI GTSAC 2 cut(s) 1042, 1313
TseI GCWGC 6 cut(s) 23, 26, 29, 379, 677, 1141
Tsp45I GTSAC 2 cut(s) 1042, 1313
TspDTI ATGAA 7 cut(s) 347, 634, 759, 844, 1069, 1400, 1416
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 4 cut(s) 141, 510, 1204, 1399
VpaK11BI GGWCC 2 cut(s) 158, 795
XagI CCTNNNNNAGG 1 cut(s) 802
XapI RAATTY 2 cut(s) 34, 1290
XceI RCATGY 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 1407
XspI CTAG 3 cut(s) 152, 899, 1163
ZrmI AGTACT 1 cut(s) 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.