Prupe.2G299300_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000970
Physical Location & Seq
Reverse (-)
28839194 .. 28842111
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G299300.1

Sequence Viewer

Length: 1497 bp
ATGGAGGAGCCACTACTGGACACAGCTGCTGGCTCTGATCAGTTGAGCACTAAGCCTCAAGATCTGTATGAAGGTGGGAACGAAGACTATGCGCCGGTGAGGAGCGTCGATGCTTTGCGGCTTATGTTTTGGATCGAGACAGTGAAGCTCTGGAAAATAGCAGGTCCCACAGTGATCACTATGTTGTGTATGTATGGGACTAACTCAGTTATCATTATCTTTGTTGGTCATCTCGGAGCTGTAGAGCTCTCAGCCGTCTCCATTTCTCTCTCCGTCATTTCCACATTCGCTTACGGATTCTTGCTTGGCATGGGGAGTGCTCTGGAGACCCTGTGTGGGCAGGCATTTGGAGCTGGGGAGATTCATATGCTTGGGATTTACATGCAGCGCTCATGGATAATCCTATTTGTAACCAGCCTCTGCATCTTGCCAATTTACATCTTTGGCACACCCGTTTTAAAGTTGCTAGGCCAAGAAGATGACATAGCCAATCTAGCTGGAGAATTTACTATTCAAATAATCCCCTCATTGTTCTCACTTGCCATTATTTTTCCATCTCAGAAGTTCCTTCAGGCTCAGAGAAAGGTTAAGGTTCTGGCATGGATTGCAGTTTTGGGTTTGATCATACAAATTGGGATGCTCTGTCTCTTCATTTTGGTGTTTGGTTGGGGCACATTGGGTGCGGCTGTTGCATTTGACATTGTAAGATGGGGCATGGCAATTGCTCAAGTTGTGTATATAATGGGTTGGTGCAGGGACGGCTGGACTGGGTTTTCATGGTTGGCTTTCAAGGAGATATGGGCTTTTGTAAGACTTTCCCTTGCCTCTGCTGTCATGCTCTGCCTTGAGATTTGGTACTTCATGAGCATACTCATTCTCACAGGCCATCTTGATAATGCAGTTATAGCAGTTGGTTCCCTTTCTATTTGCATGAACATCAACGGATTTGAACTAATGTTGTTCGTTGGAATAAATGTGGCAATAAGTGTGCGTGTCTCCAATGAGCTTGGATCAGGACGACCAAGAGCAGCCAAATATTCTGTCTATGTGACAGTATTTCAGTGTTTTCTAATGGGGATTTTTTTAATGATTGTGATCTTGATAACCAAAGACAGATTTTCCCTAATTTTTACAAGTGATAAGGATCTGCAACAAGCAGTCGCTAAGCTAGCATATCTTCTTGGTATAACTATGTTGCTCAACAGCATCCAGCCAATAATATCAGGGGTTGCAATTGGAGGTGGATGGCAAGCACTGGTAGCTTATATAAACTTGGGTTGTTACTACATTTTTGGACTTTCTCTTGGATATCTTCTTGGTTATACTGCAAATCTGGGTGTGATGGGAGTTTGGGGGGGCATGATATGCGGAACTGCTCTCCAAACCTTGCTTCTGTTGATTGTGCTCTACAAAACCAACTGGAACAAAGAGGTGGAGCAAGCAGCAAAACGCGTGAGGAAGTGGGGTGGTCAGGACGTCACAGCTCAAAGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

499

Amino Acids

54.57

Weight (kDa)

6.33

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1479
Acc36I ACCTGC 1 cut(s) 152
AccII CGCG 1 cut(s) 1452
AciI CCGC 3 cut(s) 118, 683, 1368
AclWI GGATC 3 cut(s) 140, 1018, 1152
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 554
AcyI GRCGYC 1 cut(s) 1476
AfaI GTAC 2 cut(s) 857, 1492
AfeI AGCGCT 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 336
AflIII ACRYGT 1 cut(s) 1450
AgsI TTSAA 3 cut(s) 515, 790, 950
AjuI GAANNNNNNNTTGG 2 cut(s) 1374, 1406
Alw21I GWGCWC 4 cut(s) 50, 249, 322, 1407
Alw26I GTCTC 5 cut(s) 131, 262, 320, 650, 1000
AlwI GGATC 3 cut(s) 140, 1018, 1152
AlwNI CAGNNNCTG 2 cut(s) 29, 420
Aor51HI AGCGCT 1 cut(s) 389
AoxI GGCC 2 cut(s) 469, 883
ApeKI GCWGC 4 cut(s) 26, 385, 1028, 1442
ApoI RAATTY 1 cut(s) 503
ArsI GACNNNNNNTTYG 2 cut(s) 1026, 1058
AspLEI GCGC 2 cut(s) 94, 390
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 1168
AvaII GGWCC 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 674
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 4 cut(s) 50, 249, 322, 1407
BbvI GCAGC 4 cut(s) 13, 397, 1040, 1454
BccI CCATC 5 cut(s) 562, 702, 894, 1239, 1336
BceAI ACGGC 2 cut(s) 239, 775
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BclI TGATCA 3 cut(s) 37, 174, 621
BcoDI GTCTC 5 cut(s) 131, 262, 320, 650, 1000
BfaI CTAG 3 cut(s) 467, 494, 1169
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 391
BfuAI ACCTGC 1 cut(s) 152
BglII AGATCT 1 cut(s) 61
BisI GCNGC 6 cut(s) 27, 119, 386, 684, 1029, 1443
BlpI GCTNAGC 1 cut(s) 1164
BlsI GCNGC 6 cut(s) 28, 120, 387, 685, 1030, 1444
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 3 cut(s) 9, 166, 916
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 4 cut(s) 100, 432, 627, 1215
BmtI GCTAGC 1 cut(s) 1172
BmuI ACTGGG 1 cut(s) 777
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 2 cut(s) 344, 519
Bpu1102I GCTNAGC 1 cut(s) 1164
BpuEI CTTGAG 3 cut(s) 42, 711, 866
BsaBI GATNNNNATC 2 cut(s) 1094, 1143
BsaHI GRCGYC 1 cut(s) 1476
BsaI GGTCTC 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 4 cut(s) 21, 772, 1260, 1424
Bse8I GATNNNNATC 2 cut(s) 1094, 1143
BseGI GGATG 3 cut(s) 642, 1206, 1250
BseJI GATNNNNATC 2 cut(s) 1094, 1143
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMII CTCAG 4 cut(s) 219, 264, 572, 590
BseNI ACTGG 4 cut(s) 21, 772, 1260, 1424
BseRI GAGGAG 2 cut(s) 20, 115
BseSI GKGCMC 1 cut(s) 674
BseXI GCAGC 4 cut(s) 13, 397, 1040, 1454
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 772
Bsh1236I CGCG 1 cut(s) 1452
BshFI GGCC 2 cut(s) 471, 885
BsiHKAI GWGCWC 4 cut(s) 50, 249, 322, 1407
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 3 cut(s) 150, 211, 770
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 5 cut(s) 131, 262, 320, 650, 1000
BsmBI CGTCTC 1 cut(s) 262
BsmFI GGGAC 3 cut(s) 150, 211, 770
BsnI GGCC 2 cut(s) 471, 885
Bso31I GGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 5 cut(s) 50, 249, 322, 674, 1407
Bsp143I GATC 8 cut(s) 37, 61, 132, 174, 621, 1010, 1095, 1144
Bsp1720I GCTNAGC 1 cut(s) 1164
BspACI CCGC 3 cut(s) 118, 683, 1368
BspANI GGCC 2 cut(s) 471, 885
BspCNI CTCAG 4 cut(s) 218, 263, 571, 589
BspFNI CGCG 1 cut(s) 1452
BspHI TCATGA 1 cut(s) 861
BspLI GGNNCC 3 cut(s) 9, 166, 916
BspMI ACCTGC 1 cut(s) 152
BspOI GCTAGC 1 cut(s) 1172
BspPI GGATC 3 cut(s) 140, 1018, 1152
BspTNI GGTCTC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 4 cut(s) 21, 772, 1260, 1424
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 8 cut(s) 37, 61, 132, 174, 621, 1010, 1095, 1144
BssNI GRCGYC 1 cut(s) 1476
Bst4CI ACNGT 3 cut(s) 142, 172, 1054
Bst6I CTCTTC 1 cut(s) 653
BstACI GRCGYC 1 cut(s) 1476
BstAPI GCANNNNNTGC 2 cut(s) 605, 1365
BstC8I GCNNGC 5 cut(s) 31, 342, 1170, 1251, 1440
BstDEI CTNAG 6 cut(s) 51, 205, 250, 558, 576, 1164
BstF5I GGATG 3 cut(s) 642, 1206, 1250
BstFNI CGCG 1 cut(s) 1452
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 2 cut(s) 94, 390
BstKTI GATC 8 cut(s) 40, 64, 135, 177, 624, 1013, 1098, 1147
BstMAI GTCTC 5 cut(s) 131, 262, 320, 650, 1000
BstMBI GATC 8 cut(s) 37, 61, 132, 174, 621, 1010, 1095, 1144
BstMWI GCNNNNNNNGC 9 cut(s) 350, 494, 605, 689, 759, 905, 1169, 1259, 1365
BstNSI RCATGY 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 674
BstUI CGCG 1 cut(s) 1452
BstV1I GCAGC 4 cut(s) 13, 397, 1040, 1454
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 2 cut(s) 61, 1144
BstYI RGATCY 2 cut(s) 61, 1144
BsuRI GGCC 2 cut(s) 471, 885
BtsCI GGATG 3 cut(s) 642, 1206, 1250
BtsIMutI CAGTG 4 cut(s) 147, 177, 1067, 1253
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 5 cut(s) 31, 342, 1170, 1251, 1440
CaiI CAGNNNCTG 2 cut(s) 29, 420
CciI TCATGA 1 cut(s) 861
CfoI GCGC 2 cut(s) 94, 390
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 856, 1491
CviQI GTAC 2 cut(s) 856, 1491
DdeI CTNAG 6 cut(s) 51, 205, 250, 558, 576, 1164
DpnI GATC 8 cut(s) 39, 63, 134, 176, 623, 1012, 1097, 1146
DpnII GATC 8 cut(s) 37, 61, 132, 174, 621, 1010, 1095, 1144
DraI TTTAAA 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 653
EarI CTCTTC 1 cut(s) 653
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 1310
Eco47I GGWCC 1 cut(s) 164
Eco47III AGCGCT 1 cut(s) 389
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 554
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 164
EcoRV GATATC 1 cut(s) 1310
EcoT38I GRGCYC 1 cut(s) 249
Esp3I CGTCTC 1 cut(s) 262
FaqI GGGAC 3 cut(s) 150, 211, 770
FauNDI CATATG 1 cut(s) 366
FbaI TGATCA 3 cut(s) 37, 174, 621
Fnu4HI GCNGC 6 cut(s) 27, 119, 386, 684, 1029, 1443
FokI GGATG 3 cut(s) 649, 1193, 1257
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 6 cut(s) 27, 119, 386, 684, 1029, 1443
FspBI CTAG 3 cut(s) 467, 494, 1169
GlaI GCGC 2 cut(s) 93, 389
GluI GCNGC 6 cut(s) 27, 119, 386, 684, 1029, 1443
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 2 cut(s) 344, 519
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 2 cut(s) 471, 885
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 94
HhaI GCGC 2 cut(s) 94, 390
Hin1I GRCGYC 1 cut(s) 1476
Hin6I GCGC 2 cut(s) 92, 388
HinP1I GCGC 2 cut(s) 92, 388
HinfI GANTC 2 cut(s) 297, 361
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 4 cut(s) 37, 236, 561, 579
Hpy188III TCNNGA 9 cut(s) 59, 136, 151, 323, 862, 890, 1014, 1099, 1472
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 65, 578
HpyCH4III ACNGT 3 cut(s) 142, 172, 1054
HpyCH4IV ACGT 1 cut(s) 1476
HpyF10VI GCNNNNNNNGC 9 cut(s) 350, 494, 605, 689, 759, 905, 1169, 1259, 1365
HpyF3I CTNAG 6 cut(s) 51, 205, 250, 558, 576, 1164
HpySE526I ACGT 1 cut(s) 1476
Hsp92I GRCGYC 1 cut(s) 1476
HspAI GCGC 2 cut(s) 92, 388
Ksp22I TGATCA 3 cut(s) 37, 174, 621
Kzo9I GATC 8 cut(s) 37, 61, 132, 174, 621, 1010, 1095, 1144
LmnI GCTCC 5 cut(s) 7, 102, 236, 350, 1435
Lsp1109I GCAGC 4 cut(s) 13, 397, 1040, 1454
LweI GCATC 4 cut(s) 100, 432, 627, 1215
MaeI CTAG 3 cut(s) 467, 494, 1169
MaeII ACGT 1 cut(s) 1476
MaeIII GTNAC 4 cut(s) 409, 1048, 1280, 1477
MalI GATC 8 cut(s) 39, 63, 134, 176, 623, 1012, 1097, 1146
MboI GATC 8 cut(s) 37, 61, 132, 174, 621, 1010, 1095, 1144
MboII GAAGA 5 cut(s) 95, 488, 640, 1169, 1304
MfeI CAATTG 2 cut(s) 720, 1233
MflI RGATCY 2 cut(s) 61, 1144
MhlI GDGCHC 5 cut(s) 50, 249, 322, 674, 1407
MluCI AATT 6 cut(s) 432, 503, 630, 720, 1125, 1233
MluI ACGCGT 1 cut(s) 1450
MmeI TCCRAC 1 cut(s) 946
MnlI CCTC 8 cut(s) 66, 93, 428, 535, 835, 1232, 1423, 1449
MseI TTAA 3 cut(s) 458, 588, 1085
MslI CAYNNNNRTG 1 cut(s) 656
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 95
MunI CAATTG 2 cut(s) 720, 1233
MvnI CGCG 1 cut(s) 1452
MwoI GCNNNNNNNGC 9 cut(s) 350, 494, 605, 689, 759, 905, 1169, 1259, 1365
NdeI CATATG 1 cut(s) 366
NdeII GATC 8 cut(s) 37, 61, 132, 174, 621, 1010, 1095, 1144
NheI GCTAGC 1 cut(s) 1168
NlaIV GGNNCC 3 cut(s) 9, 166, 916
NmuCI GTSAC 2 cut(s) 1048, 1477
NspI RCATGY 1 cut(s) 385
PagI TCATGA 1 cut(s) 861
PfeI GAWTC 2 cut(s) 297, 361
PkrI GCNGC 6 cut(s) 28, 120, 387, 685, 1030, 1444
PpuMI RGGWCCY 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 353
PspN4I GGNNCC 3 cut(s) 9, 166, 916
PspPI GGNCC 1 cut(s) 164
PspPPI RGGWCCY 1 cut(s) 164
PstNI CAGNNNCTG 2 cut(s) 29, 420
PsuI RGATCY 2 cut(s) 61, 1144
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 2 cut(s) 857, 1492
RsaNI GTAC 2 cut(s) 856, 1491
RseI CAYNNNNRTG 1 cut(s) 656
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 458, 588, 1085
SatI GCNGC 6 cut(s) 27, 119, 386, 684, 1029, 1443
Sau3AI GATC 8 cut(s) 37, 61, 132, 174, 621, 1010, 1095, 1144
Sau96I GGNCC 1 cut(s) 164
SduI GDGCHC 5 cut(s) 50, 249, 322, 674, 1407
SfaNI GCATC 4 cut(s) 100, 432, 627, 1215
SfcI CTRYAG 1 cut(s) 240
SgrAI CRCCGGYG 1 cut(s) 94
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 3 cut(s) 57, 726, 845
SmoI CTYRAG 3 cut(s) 57, 726, 845
Sse9I AATT 6 cut(s) 432, 503, 630, 720, 1125, 1233
SsiI CCGC 3 cut(s) 118, 683, 1368
SspI AATATT 1 cut(s) 1037
SspMI CTAG 3 cut(s) 467, 494, 1169
SstI GAGCTC 1 cut(s) 249
TaaI ACNGT 3 cut(s) 142, 172, 1054
TaiI ACGT 1 cut(s) 1479
TaqI TCGA 2 cut(s) 108, 135
TasI AATT 6 cut(s) 432, 503, 630, 720, 1125, 1233
TauI GCSGC 2 cut(s) 121, 686
TfiI GAWTC 2 cut(s) 297, 361
Tru1I TTAA 3 cut(s) 458, 588, 1085
Tru9I TTAA 3 cut(s) 458, 588, 1085
TscAI CASTG 4 cut(s) 147, 177, 1067, 1260
TseFI GTSAC 2 cut(s) 1048, 1477
TseI GCWGC 4 cut(s) 26, 385, 1028, 1442
Tsp45I GTSAC 2 cut(s) 1048, 1477
TspDTI ATGAA 6 cut(s) 84, 353, 640, 765, 850, 947
TspGWI ACGGA 3 cut(s) 262, 309, 957
TspRI CASTG 4 cut(s) 147, 177, 1067, 1260
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 503
XceI RCATGY 1 cut(s) 385
XspI CTAG 3 cut(s) 467, 494, 1169
ZraI GACGTC 1 cut(s) 1477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.