Rh3CG009800

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
647189 .. 648468
1280 bp
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UTR
Exon/CDS
Intron
Rh3CG009800.1

Sequence Viewer

Length: 201 bp
ATGGTTGTTATCTTGATAACCAAAGACTACTTCTCTGTCATCTTCACAAGCAACGCCGAATTGCAAGCAGCTGTTTCAAAGCTAGCATGGCTTCTCGGAATCACCTTGGTTCTCAACAGTGTCCAGCCTGTGATTTCAGGTGTTGCTATCGGAGGTGGATGGCAAGGAATTGTGGCTTATATTAACTTGGGTTGTTATTAG
Functional Annotation

Protein Analysis

66

Amino Acids

7.0

Weight (kDa)

5.82

Isoelectric Point (pI)

25.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 78
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 2 cut(s) 71, 82
AluI AGCT 2 cut(s) 71, 82
ApeKI GCWGC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 94
AsuNHI GCTAGC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 153
BfaI CTAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmtI GCTAGC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 80
BspOI GCTAGC 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 66, 84
BstF5I GGATG 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 66, 84
CviAII CATG 1 cut(s) 87
CviJI RGCY 5 cut(s) 71, 82, 91, 127, 176
CviKI_1 RGCY 5 cut(s) 71, 82, 91, 127, 176
Eco130I CCWWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 90
FaiI YATR 2 cut(s) 88, 180
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 83
GluI GCNGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 90
HinfI GANTC 1 cut(s) 99
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 98, 152
Hpy188III TCNNGA 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
Hsp92II CATG 1 cut(s) 90
LpnPI CCDG 3 cut(s) 123, 137, 141
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 1 cut(s) 83
MboII GAAGA 1 cut(s) 34
MluCI AATT 2 cut(s) 59, 168
MnlI CCTC 1 cut(s) 146
MseI TTAA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 88
NheI GCTAGC 1 cut(s) 82
NlaIII CATG 1 cut(s) 90
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 69
SetI ASST 5 cut(s) 73, 84, 107, 142, 157
Sse9I AATT 2 cut(s) 59, 168
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 119
TasI AATT 2 cut(s) 59, 168
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 124
TseI GCWGC 1 cut(s) 68
TspRI CASTG 1 cut(s) 124
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.