Rh3AG010400

Protein TRANSPARENT TESTA 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000970
Physical Location & Seq
Reverse (-)
647421 .. 649314
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG010400.1

Sequence Viewer

Length: 579 bp
ATGGGAAGTGCACTGGAGACATTATGTGGTCAAGCATTTGGAACTAGACATGTTAACATGCTTGGCATCTACATGCAAAGGTCATGGATCATTCTATGGACAACCTGCCTTTTCCTTACTCCACTCTATTGCTTCTCTGCCCCAATCTTAAAGCTTCTTGGCCAAGATGACGATGTAGCGGACCTGGCGGGAACATTCACCGTGTATGTGATCCCTCAGCTATTCTCACTTGCCATCAATTTCCCTTGCCAAAAGTTCCTGCAGGCACCAAGCAAGGTCCTAGTTCTTGCTTGGATCGGATTCATAGCCCTGATGGTTCACATTGGACTTCTTTTCCTCTTCATTTACGTGTTCGATTGGGGTATATATGGTGCAGCTATAGCTTTTGACATTACAGACTACTTCTCTGTCATCTTCACAAGCAACGCCGAATTGCAAGCAGCTGTTTCAAAGCTAGCATGGCTTCTCGGAATCACCTTGGTTCTCAACAGTGTCCAGCCTGTGATTTCAGGTGGAAGAAAGTTCAGACCGAATGAAGAAATGGGGAGGACAAGATATAAAAGGCGAGACAGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

192

Amino Acids

21.51

Weight (kDa)

8.37

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 1 - 111 6.7e-20 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 265
AciI CCGC 2 cut(s) 179, 188
AclWI GGATC 3 cut(s) 95, 205, 302
AcoI YGGCCR 1 cut(s) 160
AflIII ACRYGT 2 cut(s) 49, 348
AgsI TTSAA 1 cut(s) 450
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 7 cut(s) 154, 220, 377, 383, 443, 454, 576
AluI AGCT 7 cut(s) 154, 220, 377, 383, 443, 454, 576
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 11, 561
Alw44I GTGCAC 1 cut(s) 9
AlwI GGATC 3 cut(s) 95, 205, 302
AlwNI CAGNNNCTG 1 cut(s) 576
AoxI GGCC 1 cut(s) 160
ApaLI GTGCAC 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 374, 440
AspS9I GGNCC 2 cut(s) 181, 277
AsuHPI GGTGA 2 cut(s) 190, 466
AsuNHI GCTAGC 1 cut(s) 454
AvaII GGWCC 2 cut(s) 181, 277
BaeGI GKGCMC 1 cut(s) 13
BalI TGGCCA 1 cut(s) 162
BanI GGYRCC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 13
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 386, 452
BccI CCATC 2 cut(s) 242, 307
BciT130I CCWGG 1 cut(s) 185
BcoDI GTCTC 2 cut(s) 11, 561
BfaI CTAG 3 cut(s) 45, 281, 455
BfmI CTRYAG 2 cut(s) 260, 378
BfuAI ACCTGC 1 cut(s) 113
BisI GCNGC 2 cut(s) 375, 441
BlsI GCNGC 2 cut(s) 376, 442
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 2 cut(s) 181, 277
BmgT120I GGNCC 2 cut(s) 181, 277
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 75
BmtI GCTAGC 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 477
Bse1I ACTGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 477
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 2 cut(s) 386, 452
BsgI GTGCAG 1 cut(s) 393
BshFI GGCC 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 13
BsmAI GTCTC 2 cut(s) 11, 561
BsnI GGCC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 3 cut(s) 87, 210, 294
BspACI CCGC 2 cut(s) 179, 188
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 264
BspMI ACCTGC 1 cut(s) 113
BspOI GCTAGC 1 cut(s) 458
BspPI GGATC 3 cut(s) 95, 205, 302
BspT107I GGYRCC 1 cut(s) 265
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 3 cut(s) 87, 210, 294
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 3 cut(s) 202, 491, 572
Bst6I CTCTTC 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 349
BstC8I GCNNGC 3 cut(s) 264, 438, 456
BstDEI CTNAG 1 cut(s) 216
BstKTI GATC 3 cut(s) 90, 213, 297
BstMAI GTCTC 2 cut(s) 11, 561
BstMBI GATC 3 cut(s) 87, 210, 294
BstMWI GCNNNNNNNGC 3 cut(s) 185, 380, 460
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 3 cut(s) 53, 61, 76
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 2 cut(s) 260, 378
BstSLI GKGCMC 1 cut(s) 13
BstV1I GCAGC 2 cut(s) 386, 452
BsuRI GGCC 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 11, 496
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 3 cut(s) 264, 438, 456
CaiI CAGNNNCTG 1 cut(s) 576
Cfr13I GGNCC 2 cut(s) 181, 277
CviAII CATG 5 cut(s) 50, 58, 73, 84, 459
DdeI CTNAG 1 cut(s) 216
DpnI GATC 3 cut(s) 89, 212, 296
DpnII GATC 3 cut(s) 87, 210, 294
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Eco130I CCWWGG 1 cut(s) 477
Eco47I GGWCC 2 cut(s) 181, 277
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 5 cut(s) 53, 61, 76, 87, 462
FatI CATG 5 cut(s) 49, 57, 72, 83, 458
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 375, 441
Fsp4HI GCNGC 2 cut(s) 375, 441
FspBI CTAG 3 cut(s) 45, 281, 455
GluI GCNGC 2 cut(s) 375, 441
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 1 cut(s) 162
Hin1II CATG 5 cut(s) 53, 61, 76, 87, 462
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 2 cut(s) 300, 471
HpaI GTTAAC 1 cut(s) 55
HphI GGTGA 2 cut(s) 190, 466
Hpy166II GTNNAC 3 cut(s) 11, 55, 319
Hpy188I TCNGA 3 cut(s) 299, 470, 527
Hpy8I GTNNAC 3 cut(s) 11, 55, 319
HpyCH4III ACNGT 3 cut(s) 202, 491, 572
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 5 cut(s) 11, 76, 262, 374, 436
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 380, 460
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 5 cut(s) 53, 61, 76, 87, 462
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 87, 210, 294
LpnPI CCDG 9 cut(s) 118, 170, 197, 248, 272, 323, 495, 509, 513
Lsp1109I GCAGC 2 cut(s) 386, 452
LweI GCATC 1 cut(s) 75
MaeI CTAG 3 cut(s) 45, 281, 455
MaeII ACGT 1 cut(s) 348
MalI GATC 3 cut(s) 89, 212, 296
MboI GATC 3 cut(s) 87, 210, 294
MboII GAAGA 4 cut(s) 331, 406, 528, 548
MhlI GDGCHC 1 cut(s) 13
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 2 cut(s) 238, 431
MluNI TGGCCA 1 cut(s) 162
MnlI CCTC 3 cut(s) 225, 347, 540
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
MseI TTAA 2 cut(s) 54, 149
MslI CAYNNNNRTG 2 cut(s) 71, 347
Msp20I TGGCCA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 3 cut(s) 185, 380, 460
NdeII GATC 3 cut(s) 87, 210, 294
NheI GCTAGC 1 cut(s) 454
NlaIII CATG 5 cut(s) 53, 61, 76, 87, 462
NlaIV GGNNCC 1 cut(s) 267
NspI RCATGY 3 cut(s) 53, 61, 76
PciI ACATGT 1 cut(s) 49
PfeI GAWTC 2 cut(s) 300, 471
PkrI GCNGC 2 cut(s) 376, 442
Ppu21I YACGTR 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 277
PscI ACATGT 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 2 cut(s) 181, 277
PspPPI RGGWCCY 1 cut(s) 277
PstI CTGCAG 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 576
PvuII CAGCTG 1 cut(s) 443
RseI CAYNNNNRTG 2 cut(s) 71, 347
SaqAI TTAA 2 cut(s) 54, 149
SatI GCNGC 2 cut(s) 375, 441
Sau3AI GATC 3 cut(s) 87, 210, 294
Sau96I GGNCC 2 cut(s) 181, 277
SbfI CCTGCAGG 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 185
SdaI CCTGCAGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 2 cut(s) 260, 378
SinI GGWCC 2 cut(s) 181, 277
SmiMI CAYNNNNRTG 2 cut(s) 71, 347
Sse8387I CCTGCAGG 1 cut(s) 264
Sse9I AATT 2 cut(s) 238, 431
SsiI CCGC 2 cut(s) 179, 188
SspMI CTAG 3 cut(s) 45, 281, 455
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 3 cut(s) 202, 491, 572
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 354
TaqII GACCGA 1 cut(s) 544
TasI AATT 2 cut(s) 238, 431
TfiI GAWTC 2 cut(s) 300, 471
Tru1I TTAA 2 cut(s) 54, 149
Tru9I TTAA 2 cut(s) 54, 149
TscAI CASTG 2 cut(s) 18, 496
TseI GCWGC 2 cut(s) 374, 440
TspDTI ATGAA 3 cut(s) 292, 331, 549
TspRI CASTG 2 cut(s) 18, 496
VneI GTGCAC 1 cut(s) 9
VpaK11BI GGWCC 2 cut(s) 181, 277
XceI RCATGY 3 cut(s) 53, 61, 76
XspI CTAG 3 cut(s) 45, 281, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.