Prupe.2G299200_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000970
Physical Location & Seq
Reverse (-)
28832332 .. 28837068
4737 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G299200.1

Sequence Viewer

Length: 1509 bp
ATGGAGAAGCCGCTACTGGATACAGATGCTGGCGCTGATCAGTTGAGCACTAAGCCTCATGATCTGTATGAAGGTGGGAACGAAGACTATGCTCCGGTGAGGAGCTTCGATGCGCTGCGGTGTATGTTTTGGATCGAGACAGTGAAGCTCTGGAAAATGGCAGGTCCGGCAGTGATCACTATGTTGTGTATGTATGGGACTAACTCAGCTGTCATTCTCTTTGTTGGTCATATCGGAACTGTAGAGCTCTCAGCTGTCTCCATTTCTCTAGCCGTCATTTCCACATTCGCTTATGGATTCTTGTTTGGCATGGGGAGTGCTCTGGAGACCTTGTGTGGGCAGGCATTTGGAGCTGGGGAGATTCATATGCTTGGGATTTACATGCAGCGCTCGTGGATAATCCTATTAGTAACCAGCCTCTTCATCTTGCCAATTTACATCTTTGGCACACCCGTTTTGAAGTTGCTAGGCCAAGAAGATGACATAGCCAATCTAGCTGGAGAATTTACTATCCAAACAATCCCCTCATTGTTCTCACTTGCCATTATTTTTCCATCTCAGAAGTTCCTTCAGGCTCAGAGAAAGGTTATGGTTCTGGCATGGATTGCAGTTTTTGGTTTAATCATACAAATTGGACTGCTCTGTCTCTTCATTTTGGTGTTTGGTTGGGGCACATTGGGTGCGGCTGTTGCATTTGACATTGTAAGATGGGGCATGGCAATTGCTCAAGTTGTGTATATAATGGGTTGGTGCAGGGACGGCTGGACTGGGTTTTCATGGTTGGCTTTCAAGGAAATATGGGCTTTTGTAAGACTTTCTCTTGCCTCTGCTGTCATGCTCTGCCTTGAGATTTGGTACATGATGAGCATACTCATTCTCACAGGCCATCTTGATAATGCAGTTATAGCAGTTGGTTCCCTTTCTATTTGCGTGAACATTAACGGATTTGAACTAATGTTGTTCATTGGAATAAATGTGGCAATGAGTGTGCGTGTCTCCAATGAGCTTGGATCAGGACGACCAAGAGCTGCCAAATACTCTGTCTATGTGACAGTATTTCAGTGTCTTCTAATTGGGATTTTTTTCATGATTGTGATCTTGATAACCAAAGACAGTTTTTCCCTACTTTTTACAAGTGACAAGGATCTGCAACAAGCGGTCGCTAAGCTAGCATATCTTCTTTGTATAACTATGTTGCTCAACAGCATCCAGCCAATAATATCAGGGGTTGCAATTGGAGGTGGATGGCAGGCACTGGTAGCTTATATAAACTTGGGTTGTTACTACATTTTTGGACTTCCTCTTGGATATCTTCTTGGTTATACTGCAAATCTGGGTGTGATGGGACTTTGGGGGGGCATGATATGTGGAACTGCTCTCCAAACCTTGCTTCTTTTGATTGTGCTCTACAAAACCAACTGGAACAAAGAGGTGGAGCAAGCAACAAAACGCGTGAGGAAGTGGGGTGGTCAGGACGTCACAGCTGAGAATGGAGCTCAAAGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

503

Amino Acids

55.03

Weight (kDa)

5.87

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 642
AatII GACGTC 1 cut(s) 1479
Acc36I ACCTGC 1 cut(s) 152
AccII CGCG 1 cut(s) 1452
AciI CCGC 4 cut(s) 11, 118, 683, 1157
AclWI GGATC 3 cut(s) 140, 1018, 1152
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 554
AcyI GRCGYC 1 cut(s) 1476
AfaI GTAC 2 cut(s) 857, 1504
AfeI AGCGCT 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 336
AflIII ACRYGT 1 cut(s) 1450
AgsI TTSAA 3 cut(s) 460, 790, 950
AjuI GAANNNNNNNTTGG 2 cut(s) 1374, 1406
Alw21I GWGCWC 5 cut(s) 50, 249, 322, 1407, 1498
Alw26I GTCTC 5 cut(s) 131, 262, 320, 650, 1000
AlwI GGATC 3 cut(s) 140, 1018, 1152
AlwNI CAGNNNCTG 2 cut(s) 29, 1255
Aor51HI AGCGCT 1 cut(s) 389
AoxI GGCC 2 cut(s) 469, 883
ApeKI GCWGC 3 cut(s) 115, 385, 1028
ApoI RAATTY 1 cut(s) 503
ArsI GACNNNNNNTTYG 2 cut(s) 1026, 1058
AspLEI GCGC 3 cut(s) 35, 115, 390
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 1168
AvaII GGWCC 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 674
BanII GRGCYC 2 cut(s) 249, 1498
BauI CACGAG 1 cut(s) 391
BbsI GAAGAC 2 cut(s) 90, 1058
Bbv12I GWGCWC 5 cut(s) 50, 249, 322, 1407, 1498
BbvI GCAGC 3 cut(s) 102, 397, 1015
BccI CCATC 5 cut(s) 562, 702, 894, 1239, 1336
BceAI ACGGC 2 cut(s) 257, 775
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciVI GTATCC 1 cut(s) 13
BclI TGATCA 2 cut(s) 37, 174
BcoDI GTCTC 5 cut(s) 131, 262, 320, 650, 1000
BfaI CTAG 4 cut(s) 269, 467, 494, 1169
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 2 cut(s) 36, 391
BfuAI ACCTGC 1 cut(s) 152
BfuI GTATCC 1 cut(s) 13
BisI GCNGC 5 cut(s) 11, 116, 386, 684, 1029
BlpI GCTNAGC 1 cut(s) 1164
BlsI GCNGC 5 cut(s) 12, 117, 387, 685, 1030
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 916
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 3 cut(s) 16, 100, 1215
BmtI GCTAGC 1 cut(s) 1172
BmuI ACTGGG 1 cut(s) 777
BpiI GAAGAC 2 cut(s) 90, 1058
BpmI CTGGAG 2 cut(s) 344, 519
Bpu1102I GCTNAGC 1 cut(s) 1164
BpuEI CTTGAG 2 cut(s) 711, 866
BsaBI GATNNNNATC 1 cut(s) 1094
BsaHI GRCGYC 1 cut(s) 1476
BsaI GGTCTC 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 4 cut(s) 21, 772, 1260, 1424
Bse3DI GCAATG 1 cut(s) 987
Bse8I GATNNNNATC 1 cut(s) 1094
BseGI GGATG 2 cut(s) 1206, 1250
BseJI GATNNNNATC 1 cut(s) 1094
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 5 cut(s) 219, 264, 572, 590, 1476
BseNI ACTGG 4 cut(s) 21, 772, 1260, 1424
BseRI GAGGAG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 674
BseXI GCAGC 3 cut(s) 102, 397, 1015
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 772
Bsh1236I CGCG 1 cut(s) 1452
Bsh1285I CGRYCG 1 cut(s) 1161
BshFI GGCC 2 cut(s) 471, 885
BsiEI CGRYCG 1 cut(s) 1161
BsiHKAI GWGCWC 5 cut(s) 50, 249, 322, 1407, 1498
BsiSI CCGG 2 cut(s) 95, 167
BslFI GGGAC 3 cut(s) 211, 770, 1359
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 5 cut(s) 131, 262, 320, 650, 1000
BsmFI GGGAC 3 cut(s) 211, 770, 1359
BsnI GGCC 2 cut(s) 471, 885
Bso31I GGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 6 cut(s) 50, 249, 322, 674, 1407, 1498
Bsp143I GATC 7 cut(s) 37, 61, 132, 174, 1010, 1095, 1144
Bsp1720I GCTNAGC 1 cut(s) 1164
BspACI CCGC 4 cut(s) 11, 118, 683, 1157
BspANI GGCC 2 cut(s) 471, 885
BspCNI CTCAG 5 cut(s) 218, 263, 571, 589, 1477
BspFNI CGCG 1 cut(s) 1452
BspHI TCATGA 2 cut(s) 58, 1086
BspLI GGNNCC 1 cut(s) 916
BspMI ACCTGC 1 cut(s) 152
BspOI GCTAGC 1 cut(s) 1172
BspPI GGATC 3 cut(s) 140, 1018, 1152
BspTNI GGTCTC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 4 cut(s) 21, 772, 1260, 1424
BssMI GATC 7 cut(s) 37, 61, 132, 174, 1010, 1095, 1144
BssNI GRCGYC 1 cut(s) 1476
BssSI CACGAG 1 cut(s) 391
Bst2BI CACGAG 1 cut(s) 391
Bst4CI ACNGT 4 cut(s) 142, 241, 1054, 1115
Bst6I CTCTTC 2 cut(s) 425, 653
BstACI GRCGYC 1 cut(s) 1476
BstAPI GCANNNNNTGC 1 cut(s) 605
BstC8I GCNNGC 5 cut(s) 31, 342, 1170, 1251, 1440
BstDEI CTNAG 7 cut(s) 51, 205, 250, 558, 576, 1164, 1485
BstF5I GGATG 2 cut(s) 1206, 1250
BstFNI CGCG 1 cut(s) 1452
BstH2I RGCGCY 2 cut(s) 36, 391
BstHHI GCGC 3 cut(s) 35, 115, 390
BstKTI GATC 7 cut(s) 40, 64, 135, 177, 1013, 1098, 1147
BstMAI GTCTC 5 cut(s) 131, 262, 320, 650, 1000
BstMBI GATC 7 cut(s) 37, 61, 132, 174, 1010, 1095, 1144
BstMCI CGRYCG 1 cut(s) 1161
BstMWI GCNNNNNNNGC 9 cut(s) 167, 350, 494, 605, 689, 759, 905, 1169, 1259
BstNSI RCATGY 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 674
BstUI CGCG 1 cut(s) 1452
BstV1I GCAGC 3 cut(s) 102, 397, 1015
BstV2I GAAGAC 2 cut(s) 90, 1058
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
BsuI GTATCC 1 cut(s) 13
BsuRI GGCC 2 cut(s) 471, 885
BtsCI GGATG 2 cut(s) 1206, 1250
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 4 cut(s) 147, 177, 1067, 1253
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 5 cut(s) 31, 342, 1170, 1251, 1440
CaiI CAGNNNCTG 2 cut(s) 29, 1255
CciI TCATGA 2 cut(s) 58, 1086
CfoI GCGC 3 cut(s) 35, 115, 390
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 856, 1503
CviQI GTAC 2 cut(s) 856, 1503
DdeI CTNAG 7 cut(s) 51, 205, 250, 558, 576, 1164, 1485
DpnI GATC 7 cut(s) 39, 63, 134, 176, 1012, 1097, 1146
DpnII GATC 7 cut(s) 37, 61, 132, 174, 1010, 1095, 1144
DrdI GACNNNNNNGTC 1 cut(s) 642
DseDI GACNNNNNNGTC 1 cut(s) 642
Eam1104I CTCTTC 2 cut(s) 425, 653
EarI CTCTTC 2 cut(s) 425, 653
Ecl136II GAGCTC 2 cut(s) 247, 1496
Eco24I GRGCYC 2 cut(s) 249, 1498
Eco31I GGTCTC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 1310
Eco47I GGWCC 1 cut(s) 164
Eco47III AGCGCT 1 cut(s) 389
Eco53kI GAGCTC 2 cut(s) 247, 1496
Eco57I CTGAAG 1 cut(s) 554
EcoICRI GAGCTC 2 cut(s) 247, 1496
EcoRV GATATC 1 cut(s) 1310
EcoT38I GRGCYC 2 cut(s) 249, 1498
FaqI GGGAC 3 cut(s) 211, 770, 1359
FauNDI CATATG 1 cut(s) 366
FbaI TGATCA 2 cut(s) 37, 174
Fnu4HI GCNGC 5 cut(s) 11, 116, 386, 684, 1029
FokI GGATG 2 cut(s) 1193, 1257
FriOI GRGCYC 2 cut(s) 249, 1498
Fsp4HI GCNGC 5 cut(s) 11, 116, 386, 684, 1029
FspBI CTAG 4 cut(s) 269, 467, 494, 1169
GlaI GCGC 3 cut(s) 34, 114, 389
GluI GCNGC 5 cut(s) 11, 116, 386, 684, 1029
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 2 cut(s) 344, 519
HaeII RGCGCY 2 cut(s) 36, 391
HaeIII GGCC 2 cut(s) 471, 885
HapII CCGG 2 cut(s) 95, 167
HhaI GCGC 3 cut(s) 35, 115, 390
Hin1I GRCGYC 1 cut(s) 1476
Hin6I GCGC 3 cut(s) 33, 113, 388
HinP1I GCGC 3 cut(s) 33, 113, 388
HinfI GANTC 2 cut(s) 297, 361
HpaII CCGG 2 cut(s) 95, 167
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 934
Hpy188I TCNGA 3 cut(s) 236, 561, 579
Hpy188III TCNNGA 9 cut(s) 59, 136, 151, 323, 890, 1014, 1087, 1099, 1472
Hpy8I GTNNAC 1 cut(s) 934
HpyAV CCTTC 2 cut(s) 65, 578
HpyCH4III ACNGT 4 cut(s) 142, 241, 1054, 1115
HpyCH4IV ACGT 1 cut(s) 1476
HpyCH4V TGCA 8 cut(s) 385, 608, 692, 753, 899, 1150, 1232, 1328
HpyF10VI GCNNNNNNNGC 9 cut(s) 167, 350, 494, 605, 689, 759, 905, 1169, 1259
HpyF3I CTNAG 7 cut(s) 51, 205, 250, 558, 576, 1164, 1485
HpySE526I ACGT 1 cut(s) 1476
Hsp92I GRCGYC 1 cut(s) 1476
HspAI GCGC 3 cut(s) 33, 113, 388
Ksp22I TGATCA 2 cut(s) 37, 174
Kzo9I GATC 7 cut(s) 37, 61, 132, 174, 1010, 1095, 1144
LmnI GCTCC 5 cut(s) 97, 102, 350, 1435, 1493
Lsp1109I GCAGC 3 cut(s) 102, 397, 1015
LweI GCATC 3 cut(s) 16, 100, 1215
MaeI CTAG 4 cut(s) 269, 467, 494, 1169
MaeII ACGT 1 cut(s) 1476
MaeIII GTNAC 5 cut(s) 409, 1048, 1136, 1280, 1477
MalI GATC 7 cut(s) 39, 63, 134, 176, 1012, 1097, 1146
MboI GATC 7 cut(s) 37, 61, 132, 174, 1010, 1095, 1144
MboII GAAGA 7 cut(s) 95, 412, 488, 640, 1058, 1169, 1304
MfeI CAATTG 2 cut(s) 720, 1233
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 6 cut(s) 50, 249, 322, 674, 1407, 1498
MluCI AATT 6 cut(s) 432, 503, 630, 720, 1071, 1233
MluI ACGCGT 1 cut(s) 1450
MnlI CCTC 9 cut(s) 66, 93, 428, 535, 835, 1232, 1311, 1423, 1449
MseI TTAA 2 cut(s) 620, 939
MslI CAYNNNNRTG 2 cut(s) 656, 1091
MspA1I CMGCKG 3 cut(s) 209, 254, 1484
MspI CCGG 2 cut(s) 95, 167
MunI CAATTG 2 cut(s) 720, 1233
MvnI CGCG 1 cut(s) 1452
MwoI GCNNNNNNNGC 9 cut(s) 167, 350, 494, 605, 689, 759, 905, 1169, 1259
NdeI CATATG 1 cut(s) 366
NdeII GATC 7 cut(s) 37, 61, 132, 174, 1010, 1095, 1144
NheI GCTAGC 1 cut(s) 1168
NlaIV GGNNCC 1 cut(s) 916
NmuCI GTSAC 3 cut(s) 1048, 1136, 1477
NspI RCATGY 1 cut(s) 385
PagI TCATGA 2 cut(s) 58, 1086
PfeI GAWTC 2 cut(s) 297, 361
PkrI GCNGC 5 cut(s) 12, 117, 387, 685, 1030
Psp124BI GAGCTC 2 cut(s) 249, 1498
PspFI CCCAGC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 916
PspPI GGNCC 1 cut(s) 164
PstNI CAGNNNCTG 2 cut(s) 29, 1255
PsuI RGATCY 1 cut(s) 1144
PvuII CAGCTG 3 cut(s) 209, 254, 1484
RsaI GTAC 2 cut(s) 857, 1504
RsaNI GTAC 2 cut(s) 856, 1503
RseI CAYNNNNRTG 2 cut(s) 656, 1091
SacI GAGCTC 2 cut(s) 249, 1498
SaqAI TTAA 2 cut(s) 620, 939
SatI GCNGC 5 cut(s) 11, 116, 386, 684, 1029
Sau3AI GATC 7 cut(s) 37, 61, 132, 174, 1010, 1095, 1144
Sau96I GGNCC 1 cut(s) 164
SduI GDGCHC 6 cut(s) 50, 249, 322, 674, 1407, 1498
SfaNI GCATC 3 cut(s) 16, 100, 1215
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 656, 1091
SmlI CTYRAG 2 cut(s) 726, 845
SmoI CTYRAG 2 cut(s) 726, 845
Sse9I AATT 6 cut(s) 432, 503, 630, 720, 1071, 1233
SsiI CCGC 4 cut(s) 11, 118, 683, 1157
SspMI CTAG 4 cut(s) 269, 467, 494, 1169
SstI GAGCTC 2 cut(s) 249, 1498
TaaI ACNGT 4 cut(s) 142, 241, 1054, 1115
TaiI ACGT 1 cut(s) 1479
TaqI TCGA 2 cut(s) 108, 135
TasI AATT 6 cut(s) 432, 503, 630, 720, 1071, 1233
TauI GCSGC 2 cut(s) 13, 686
TfiI GAWTC 2 cut(s) 297, 361
Tru1I TTAA 2 cut(s) 620, 939
Tru9I TTAA 2 cut(s) 620, 939
TscAI CASTG 4 cut(s) 147, 177, 1067, 1260
TseFI GTSAC 3 cut(s) 1048, 1136, 1477
TseI GCWGC 3 cut(s) 115, 385, 1028
Tsp45I GTSAC 3 cut(s) 1048, 1136, 1477
TspDTI ATGAA 7 cut(s) 84, 353, 412, 640, 765, 952, 1075
TspGWI ACGGA 1 cut(s) 957
TspRI CASTG 4 cut(s) 147, 177, 1067, 1260
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 503
XceI RCATGY 1 cut(s) 385
XspI CTAG 4 cut(s) 269, 467, 494, 1169
ZraI GACGTC 1 cut(s) 1477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.