mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G52470 |
| fragaria_vesca | FvH4_7g30020 |
| rosa_chinensis | RchiOBHm_Chr1g0377981 |
| rosa_laevigata | RLG00000026480 |
| rosa_multiflora | Rmu_sc0002068.1_g000004 |
| rosa_roxburghii | Rroxscaffold_156G00440430 Rroxscaffold_4G00280860 |
| rosa_rugosa | Rorug01G0406000 Rorug01G0406000 Rorug02G0371900 |
| rosa_samantha | Rh1AG425300 Rh1BG384000 Rh1CG397800 Rh1DG415300 |
| rosa_wichuraiana | Rw1G037300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 12 |
| Acc65I | GGTACC | 1 cut(s) | 479 |
| AccB1I | GGYRCC | 3 cut(s) | 4, 446, 479 |
| AccI | GTMKAC | 1 cut(s) | 315 |
| AccII | CGCG | 1 cut(s) | 168 |
| AciI | CCGC | 4 cut(s) | 166, 168, 210, 907 |
| AcoI | YGGCCR | 1 cut(s) | 169 |
| AfaI | GTAC | 2 cut(s) | 481, 635 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 14, 128, 262, 811 |
| AgsI | TTSAA | 4 cut(s) | 611, 712, 851, 866 |
| AjiI | CACGTC | 1 cut(s) | 661 |
| AjnI | CCWGG | 4 cut(s) | 442, 449, 462, 695 |
| AluBI | AGCT | 4 cut(s) | 311, 404, 707, 823 |
| AluI | AGCT | 4 cut(s) | 311, 404, 707, 823 |
| Alw26I | GTCTC | 3 cut(s) | 493, 502, 555 |
| Ama87I | CYCGRG | 1 cut(s) | 12 |
| AoxI | GGCC | 9 cut(s) | 16, 70, 82, 130, 154, 169, 181, 511, 693 |
| ApeKI | GCWGC | 4 cut(s) | 401, 404, 470, 823 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 383 |
| Asp718I | GGTACC | 1 cut(s) | 479 |
| AspS9I | GGNCC | 3 cut(s) | 154, 298, 512 |
| AsuC2I | CCSGG | 1 cut(s) | 303 |
| AsuHPI | GGTGA | 4 cut(s) | 107, 149, 173, 826 |
| AvaI | CYCGRG | 1 cut(s) | 12 |
| AvaII | GGWCC | 1 cut(s) | 298 |
| BaeGI | GKGCMC | 1 cut(s) | 744 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 471, 504 |
| BanI | GGYRCC | 3 cut(s) | 4, 446, 479 |
| BanII | GRGCYC | 1 cut(s) | 234 |
| BbvCI | CCTCAGC | 1 cut(s) | 792 |
| BbvI | GCAGC | 4 cut(s) | 391, 413, 457, 810 |
| BccI | CCATC | 2 cut(s) | 53, 344 |
| BceAI | ACGGC | 5 cut(s) | 3, 69, 141, 156, 168 |
| BciT130I | CCWGG | 4 cut(s) | 444, 451, 464, 697 |
| BclI | TGATCA | 2 cut(s) | 688, 880 |
| BcnI | CCSGG | 1 cut(s) | 303 |
| BcoDI | GTCTC | 3 cut(s) | 493, 502, 555 |
| BfaI | CTAG | 3 cut(s) | 618, 704, 937 |
| BfmI | CTRYAG | 1 cut(s) | 824 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 189 |
| BglII | AGATCT | 1 cut(s) | 429 |
| BisI | GCNGC | 5 cut(s) | 169, 402, 405, 471, 824 |
| BlsI | GCNGC | 5 cut(s) | 170, 403, 406, 472, 825 |
| Bme1390I | CCNGG | 5 cut(s) | 303, 444, 451, 464, 697 |
| Bme18I | GGWCC | 1 cut(s) | 298 |
| BmeT110I | CYCGRG | 1 cut(s) | 12 |
| BmgBI | CACGTC | 1 cut(s) | 661 |
| BmgT120I | GGNCC | 3 cut(s) | 154, 298, 512 |
| BmiI | GGNNCC | 6 cut(s) | 6, 155, 300, 380, 448, 481 |
| BmrFI | CCNGG | 5 cut(s) | 303, 444, 451, 464, 697 |
| BmrI | ACTGGG | 1 cut(s) | 117 |
| BmsI | GCATC | 4 cut(s) | 265, 604, 631, 725 |
| BmuI | ACTGGG | 1 cut(s) | 117 |
| Bpu10I | CCTNAGC | 2 cut(s) | 261, 792 |
| BpuMI | CCSGG | 1 cut(s) | 303 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 297, 327 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 14, 128, 262, 811 |
| Bse1I | ACTGG | 2 cut(s) | 123, 523 |
| BseBI | CCWGG | 4 cut(s) | 444, 451, 464, 697 |
| BseGI | GGATG | 3 cut(s) | 355, 527, 622 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 14, 128, 262, 811 |
| BseMII | CTCAG | 2 cut(s) | 783, 801 |
| BseNI | ACTGG | 2 cut(s) | 123, 523 |
| BseRI | GAGGAG | 1 cut(s) | 210 |
| BseSI | GKGCMC | 1 cut(s) | 744 |
| BseX3I | CGGCCG | 1 cut(s) | 169 |
| BseXI | GCAGC | 4 cut(s) | 391, 413, 457, 810 |
| BseYI | CCCAGC | 1 cut(s) | 245 |
| BsgI | GTGCAG | 1 cut(s) | 763 |
| Bsh1236I | CGCG | 1 cut(s) | 168 |
| Bsh1285I | CGRYCG | 1 cut(s) | 172 |
| BshFI | GGCC | 9 cut(s) | 18, 72, 84, 132, 156, 171, 183, 513, 695 |
| BshNI | GGYRCC | 3 cut(s) | 4, 446, 479 |
| BsiEI | CGRYCG | 1 cut(s) | 172 |
| BsiHKCI | CYCGRG | 1 cut(s) | 12 |
| BsiSI | CCGG | 2 cut(s) | 303, 735 |
| BslFI | GGGAC | 1 cut(s) | 284 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 14, 128, 262, 811 |
| BsmAI | GTCTC | 3 cut(s) | 493, 502, 555 |
| BsmFI | GGGAC | 1 cut(s) | 284 |
| BsmI | GAATGC | 1 cut(s) | 718 |
| BsnI | GGCC | 9 cut(s) | 18, 72, 84, 132, 156, 171, 183, 513, 695 |
| BsoBI | CYCGRG | 1 cut(s) | 12 |
| Bsp1286I | GDGCHC | 2 cut(s) | 234, 744 |
| Bsp143I | GATC | 3 cut(s) | 429, 688, 880 |
| BspACI | CCGC | 4 cut(s) | 166, 168, 210, 907 |
| BspANI | GGCC | 9 cut(s) | 18, 72, 84, 132, 156, 171, 183, 513, 695 |
| BspCNI | CTCAG | 2 cut(s) | 784, 802 |
| BspFNI | CGCG | 1 cut(s) | 168 |
| BspLI | GGNNCC | 6 cut(s) | 6, 155, 300, 380, 448, 481 |
| BspMAI | CTGCAG | 1 cut(s) | 828 |
| BspT107I | GGYRCC | 3 cut(s) | 4, 446, 479 |
| BsrI | ACTGG | 2 cut(s) | 123, 523 |
| BssMI | GATC | 3 cut(s) | 429, 688, 880 |
| Bst2UI | CCWGG | 4 cut(s) | 444, 451, 464, 697 |
| Bst4CI | ACNGT | 6 cut(s) | 110, 143, 487, 638, 784, 837 |
| Bst6I | CTCTTC | 3 cut(s) | 172, 320, 578 |
| BstC8I | GCNNGC | 2 cut(s) | 828, 911 |
| BstDEI | CTNAG | 5 cut(s) | 216, 261, 579, 792, 810 |
| BstDSI | CCRYGG | 7 cut(s) | 19, 85, 142, 157, 166, 172, 184 |
| BstEII | GGTNACC | 3 cut(s) | 137, 161, 902 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 12, 260 |
| BstF5I | GGATG | 3 cut(s) | 355, 527, 622 |
| BstFNI | CGCG | 1 cut(s) | 168 |
| BstKTI | GATC | 3 cut(s) | 432, 691, 883 |
| BstMAI | GTCTC | 3 cut(s) | 493, 502, 555 |
| BstMBI | GATC | 3 cut(s) | 429, 688, 880 |
| BstMCI | CGRYCG | 1 cut(s) | 172 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 189, 713 |
| BstNI | CCWGG | 4 cut(s) | 444, 451, 464, 697 |
| BstNSI | RCATGY | 2 cut(s) | 245, 913 |
| BstPI | GGTNACC | 3 cut(s) | 137, 161, 902 |
| BstSCI | CCNGG | 5 cut(s) | 301, 442, 449, 462, 695 |
| BstSFI | CTRYAG | 1 cut(s) | 824 |
| BstSLI | GKGCMC | 1 cut(s) | 744 |
| BstUI | CGCG | 1 cut(s) | 168 |
| BstV1I | GCAGC | 4 cut(s) | 391, 413, 457, 810 |
| BstX2I | RGATCY | 1 cut(s) | 429 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 295 |
| BstYI | RGATCY | 1 cut(s) | 429 |
| BstZI | CGGCCG | 1 cut(s) | 169 |
| BsuRI | GGCC | 9 cut(s) | 18, 72, 84, 132, 156, 171, 183, 513, 695 |
| BtgI | CCRYGG | 7 cut(s) | 19, 85, 142, 157, 166, 172, 184 |
| BtrI | CACGTC | 1 cut(s) | 661 |
| BtsCI | GGATG | 3 cut(s) | 355, 527, 622 |
| BtsI | GCAGTG | 1 cut(s) | 540 |
| BtsIMutI | CAGTG | 4 cut(s) | 115, 130, 540, 780 |
| Cac8I | GCNNGC | 2 cut(s) | 828, 911 |
| Cfr13I | GGNCC | 3 cut(s) | 154, 298, 512 |
| Cfr42I | CCGCGG | 1 cut(s) | 169 |
| CsiI | ACCWGGT | 1 cut(s) | 442 |
| Csp6I | GTAC | 2 cut(s) | 480, 634 |
| CviAII | CATG | 7 cut(s) | 242, 295, 494, 574, 652, 884, 910 |
| CviQI | GTAC | 2 cut(s) | 480, 634 |
| DdeI | CTNAG | 5 cut(s) | 216, 261, 579, 792, 810 |
| DpnI | GATC | 3 cut(s) | 431, 690, 882 |
| DpnII | GATC | 3 cut(s) | 429, 688, 880 |
| EaeI | YGGCCR | 1 cut(s) | 169 |
| EagI | CGGCCG | 1 cut(s) | 169 |
| Eam1104I | CTCTTC | 3 cut(s) | 172, 320, 578 |
| EarI | CTCTTC | 3 cut(s) | 172, 320, 578 |
| EciI | GGCGGA | 1 cut(s) | 225 |
| EclXI | CGGCCG | 1 cut(s) | 169 |
| Eco24I | GRGCYC | 1 cut(s) | 234 |
| Eco47I | GGWCC | 1 cut(s) | 298 |
| Eco52I | CGGCCG | 1 cut(s) | 169 |
| Eco88I | CYCGRG | 1 cut(s) | 12 |
| Eco91I | GGTNACC | 3 cut(s) | 137, 161, 902 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 12, 260 |
| EcoO65I | GGTNACC | 3 cut(s) | 137, 161, 902 |
| EcoRII | CCWGG | 4 cut(s) | 442, 449, 462, 695 |
| EcoT22I | ATGCAT | 1 cut(s) | 718 |
| EcoT38I | GRGCYC | 1 cut(s) | 234 |
| FaeI | CATG | 7 cut(s) | 245, 298, 497, 577, 655, 887, 913 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 264, 296, 846, 878 |
| FaqI | GGGAC | 1 cut(s) | 284 |
| FatI | CATG | 7 cut(s) | 241, 294, 493, 573, 651, 883, 909 |
| FbaI | TGATCA | 2 cut(s) | 688, 880 |
| FblI | GTMKAC | 1 cut(s) | 315 |
| Fnu4HI | GCNGC | 5 cut(s) | 169, 402, 405, 471, 824 |
| FokI | GGATG | 3 cut(s) | 362, 534, 609 |
| FriOI | GRGCYC | 1 cut(s) | 234 |
| Fsp4HI | GCNGC | 5 cut(s) | 169, 402, 405, 471, 824 |
| FspBI | CTAG | 3 cut(s) | 618, 704, 937 |
| GluI | GCNGC | 5 cut(s) | 169, 402, 405, 471, 824 |
| GsaI | CCCAGC | 1 cut(s) | 249 |
| HaeIII | GGCC | 9 cut(s) | 18, 72, 84, 132, 156, 171, 183, 513, 695 |
| HapII | CCGG | 2 cut(s) | 303, 735 |
| Hin1II | CATG | 7 cut(s) | 245, 298, 497, 577, 655, 887, 913 |
| HincII | GTYRAC | 1 cut(s) | 658 |
| HindII | GTYRAC | 1 cut(s) | 658 |
| HinfI | GANTC | 3 cut(s) | 90, 700, 859 |
| HpaII | CCGG | 2 cut(s) | 303, 735 |
| HphI | GGTGA | 4 cut(s) | 107, 149, 173, 826 |
| Hpy166II | GTNNAC | 3 cut(s) | 316, 571, 658 |
| Hpy188I | TCNGA | 3 cut(s) | 502, 673, 811 |
| Hpy188III | TCNNGA | 2 cut(s) | 433, 863 |
| Hpy8I | GTNNAC | 3 cut(s) | 316, 571, 658 |
| HpyAV | CCTTC | 2 cut(s) | 45, 199 |
| HpyCH4III | ACNGT | 6 cut(s) | 110, 143, 487, 638, 784, 837 |
| HpyCH4IV | ACGT | 1 cut(s) | 660 |
| HpyCH4V | TGCA | 5 cut(s) | 533, 680, 716, 780, 826 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 189, 713 |
| HpyF3I | CTNAG | 5 cut(s) | 216, 261, 579, 792, 810 |
| HpySE526I | ACGT | 1 cut(s) | 660 |
| Hsp92II | CATG | 7 cut(s) | 245, 298, 497, 577, 655, 887, 913 |
| KpnI | GGTACC | 1 cut(s) | 483 |
| Ksp22I | TGATCA | 2 cut(s) | 688, 880 |
| KspI | CCGCGG | 1 cut(s) | 169 |
| Kzo9I | GATC | 3 cut(s) | 429, 688, 880 |
| Lsp1109I | GCAGC | 4 cut(s) | 391, 413, 457, 810 |
| LweI | GCATC | 4 cut(s) | 265, 604, 631, 725 |
| MabI | ACCWGGT | 1 cut(s) | 442 |
| MaeI | CTAG | 3 cut(s) | 618, 704, 937 |
| MaeII | ACGT | 1 cut(s) | 660 |
| MaeIII | GTNAC | 7 cut(s) | 95, 104, 137, 161, 283, 856, 902 |
| MalI | GATC | 3 cut(s) | 431, 690, 882 |
| MboI | GATC | 3 cut(s) | 429, 688, 880 |
| MboII | GAAGA | 6 cut(s) | 189, 284, 337, 595, 623, 829 |
| MflI | RGATCY | 1 cut(s) | 429 |
| MhlI | GDGCHC | 2 cut(s) | 234, 744 |
| MluCI | AATT | 2 cut(s) | 603, 766 |
| MlyI | GAGTC | 1 cut(s) | 853 |
| MmeI | TCCRAC | 1 cut(s) | 525 |
| Mph1103I | ATGCAT | 1 cut(s) | 718 |
| MroXI | GAANNNNTTC | 1 cut(s) | 383 |
| MseI | TTAA | 4 cut(s) | 117, 438, 729, 840 |
| MslI | CAYNNNNRTG | 3 cut(s) | 240, 552, 888 |
| MspA1I | CMGCKG | 2 cut(s) | 168, 404 |
| MspI | CCGG | 2 cut(s) | 303, 735 |
| MspR9I | CCNGG | 5 cut(s) | 303, 444, 451, 464, 697 |
| Mva1269I | GAATGC | 1 cut(s) | 718 |
| MvaI | CCWGG | 4 cut(s) | 444, 451, 464, 697 |
| MvnI | CGCG | 1 cut(s) | 168 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 189, 713 |
| NciI | CCSGG | 1 cut(s) | 303 |
| NdeII | GATC | 3 cut(s) | 429, 688, 880 |
| NlaIII | CATG | 7 cut(s) | 245, 298, 497, 577, 655, 887, 913 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 155, 300, 380, 448, 481 |
| NmeAIII | GCCGAG | 2 cut(s) | 98, 158 |
| NmuCI | GTSAC | 5 cut(s) | 95, 137, 161, 283, 856 |
| NsiI | ATGCAT | 1 cut(s) | 718 |
| NspI | RCATGY | 2 cut(s) | 245, 913 |
| PaeI | GCATGC | 1 cut(s) | 913 |
| PaeR7I | CTCGAG | 1 cut(s) | 12 |
| PctI | GAATGC | 1 cut(s) | 718 |
| PdmI | GAANNNNTTC | 1 cut(s) | 383 |
| PfeI | GAWTC | 2 cut(s) | 90, 700 |
| PkrI | GCNGC | 5 cut(s) | 170, 403, 406, 472, 825 |
| PleI | GAGTC | 1 cut(s) | 853 |
| PpsI | GAGTC | 1 cut(s) | 853 |
| Psp6I | CCWGG | 4 cut(s) | 442, 449, 462, 695 |
| PspEI | GGTNACC | 3 cut(s) | 137, 161, 902 |
| PspFI | CCCAGC | 1 cut(s) | 245 |
| PspGI | CCWGG | 4 cut(s) | 442, 449, 462, 695 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 155, 300, 380, 448, 481 |
| PspPI | GGNCC | 3 cut(s) | 154, 298, 512 |
| PspXI | VCTCGAGB | 1 cut(s) | 12 |
| PstI | CTGCAG | 1 cut(s) | 828 |
| PsuI | RGATCY | 1 cut(s) | 429 |
| PvuII | CAGCTG | 1 cut(s) | 404 |
| RsaI | GTAC | 2 cut(s) | 481, 635 |
| RsaNI | GTAC | 2 cut(s) | 480, 634 |
| RseI | CAYNNNNRTG | 3 cut(s) | 240, 552, 888 |
| SacII | CCGCGG | 1 cut(s) | 169 |
| SaqAI | TTAA | 4 cut(s) | 117, 438, 729, 840 |
| SatI | GCNGC | 5 cut(s) | 169, 402, 405, 471, 824 |
| Sau3AI | GATC | 3 cut(s) | 429, 688, 880 |
| Sau96I | GGNCC | 3 cut(s) | 154, 298, 512 |
| SchI | GAGTC | 1 cut(s) | 853 |
| ScrFI | CCNGG | 5 cut(s) | 303, 444, 451, 464, 697 |
| SduI | GDGCHC | 2 cut(s) | 234, 744 |
| SexAI | ACCWGGT | 1 cut(s) | 442 |
| SfaNI | GCATC | 4 cut(s) | 265, 604, 631, 725 |
| SfcI | CTRYAG | 1 cut(s) | 824 |
| Sfr274I | CTCGAG | 1 cut(s) | 12 |
| Sfr303I | CCGCGG | 1 cut(s) | 169 |
| SgrBI | CCGCGG | 1 cut(s) | 169 |
| SinI | GGWCC | 1 cut(s) | 298 |
| SlaI | CTCGAG | 1 cut(s) | 12 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 240, 552, 888 |
| SmlI | CTYRAG | 1 cut(s) | 12 |
| SmoI | CTYRAG | 1 cut(s) | 12 |
| SphI | GCATGC | 1 cut(s) | 913 |
| Sse9I | AATT | 2 cut(s) | 603, 766 |
| SsiI | CCGC | 4 cut(s) | 166, 168, 210, 907 |
| SspMI | CTAG | 3 cut(s) | 618, 704, 937 |
| StyD4I | CCNGG | 5 cut(s) | 301, 442, 449, 462, 695 |
| TaaI | ACNGT | 6 cut(s) | 110, 143, 487, 638, 784, 837 |
| TaiI | ACGT | 1 cut(s) | 663 |
| TaqI | TCGA | 2 cut(s) | 13, 774 |
| TasI | AATT | 2 cut(s) | 603, 766 |
| TauI | GCSGC | 1 cut(s) | 171 |
| TfiI | GAWTC | 2 cut(s) | 90, 700 |
| Tru1I | TTAA | 4 cut(s) | 117, 438, 729, 840 |
| Tru9I | TTAA | 4 cut(s) | 117, 438, 729, 840 |
| TscAI | CASTG | 4 cut(s) | 115, 130, 540, 787 |
| TseFI | GTSAC | 5 cut(s) | 95, 137, 161, 283, 856 |
| TseI | GCWGC | 4 cut(s) | 401, 404, 470, 823 |
| Tsp45I | GTSAC | 5 cut(s) | 95, 137, 161, 283, 856 |
| TspDTI | ATGAA | 1 cut(s) | 218 |
| TspGWI | ACGGA | 2 cut(s) | 325, 377 |
| TspRI | CASTG | 4 cut(s) | 115, 130, 540, 787 |
| VpaK11BI | GGWCC | 1 cut(s) | 298 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 12, 260 |
| XceI | RCATGY | 2 cut(s) | 245, 913 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 242 |
| XhoI | CTCGAG | 1 cut(s) | 12 |
| XmiI | GTMKAC | 1 cut(s) | 315 |
| XmnI | GAANNNNTTC | 1 cut(s) | 383 |
| XspI | CTAG | 3 cut(s) | 618, 704, 937 |
| Zsp2I | ATGCAT | 1 cut(s) | 718 |