Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0015862

Physical Location & Seq

Genomic Coordinates Reverse (-)

3320522 .. 3323906

Gene Structure 3385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCACCTCCTCGAGGCCGTGGTGGTTCTGGTGGGTTCAGGGGTGGAAGGAGTGATGGAGGGAGAGGCCGAGGTGGAGGCCGTGGATTCGGTGACAGAAGTAACAGTGGTTTTAAGCCCAGTGGAGGCCGAGGTGACCGTGGTGGTCGGGGCCGTGGTGACCGCGGCCGTGGAAGAGGCCGTGGGGGCAGAGGAGGAATGAAGGGCGGAACCAAGGTTGTGGTTGAGCCCCATAGACATGCTGGGGTTTTCCTTGCTAAGGGTAAAGAAGATGCTCTTGTGACTAAGAACATGGTCCCTGGAGAAGCTGTCTACAATGAGAAGAGGATTTCCGTTCAGCAAGAGGATGGAACAAAGGTTGAGTATAGGATTTGGAACCCTTTCCGTTCCAAGTTGGCAGCTGCTATTCTTGGTGGTGTTGATGAGATCTGGATTAAACCTGGTGCCAAGGTTCTCTACCTGGGGGCTGCTTCTGGTACCACAGTCTCTCATGTCTCCGACATTGTTGGCCCTACTGGATGTGTCTATGCAGTGGAGTTTTCTCATAGAAGTGGCAGAGACTTGGTAAACATGGCTAAGAAGAGAACGAATGTCATACCAATTATTGAAGATGCTAGGCATCCAGCGAAATACCGCATGCTTGTTGGCATGGTCGACGTCATATTTTCTGATGTTGCACAACCCGATCAGGCCAGGATTCTAGCTTTGAATGCATCATATTTTCTTAAATCCCGGAGGGCACTTCGTCATCTCTATCAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

254

Amino Acids

27.15

Weight (kDa)

10.82

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	75 - 244	1.1e-83	Fibrillarin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52470
fragaria_vesca	FvH4_7g30020
rosa_chinensis	RchiOBHm_Chr1g0377981
rosa_laevigata	RLG00000026480
rosa_multiflora	Rmu_sc0002068.1_g000004
rosa_roxburghii	Rroxscaffold_156G00440430 Rroxscaffold_4G00280860
rosa_rugosa	Rorug01G0406000 Rorug01G0406000 Rorug02G0371900
rosa_samantha	Rh1AG425300 Rh1BG384000 Rh1CG397800 Rh1DG415300
rosa_wichuraiana	Rw1G037300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	660
AbsI	CCTCGAGG	1 cut(s)	12
Acc65I	GGTACC	1 cut(s)	476
AccB1I	GGYRCC	3 cut(s)	4, 443, 476
AccI	GTMKAC	2 cut(s)	312, 654
AccII	CGCG	1 cut(s)	165
AciI	CCGC	4 cut(s)	163, 165, 207, 634
AcoI	YGGCCR	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	657
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	3 cut(s)	14, 125, 259
AgsI	TTSAA	2 cut(s)	608, 709
AjnI	CCWGG	4 cut(s)	298, 439, 459, 692
AluBI	AGCT	3 cut(s)	308, 401, 704
AluI	AGCT	3 cut(s)	308, 401, 704
Alw26I	GTCTC	3 cut(s)	490, 499, 552
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	9 cut(s)	16, 67, 79, 127, 151, 166, 178, 508, 690
ApeKI	GCWGC	3 cut(s)	398, 401, 467
Asp700I	GAANNNNTTC	1 cut(s)	380
Asp718I	GGTACC	1 cut(s)	476
AspS9I	GGNCC	3 cut(s)	151, 295, 509
AsuC2I	CCSGG	1 cut(s)	733
AsuHPI	GGTGA	3 cut(s)	104, 146, 170
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	742
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BanI	GGYRCC	3 cut(s)	4, 443, 476
BanII	GRGCYC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	388, 410, 454
BccI	CCATC	2 cut(s)	50, 341
BceAI	ACGGC	5 cut(s)	3, 66, 138, 153, 165
BciT130I	CCWGG	4 cut(s)	300, 441, 461, 694
BcnI	CCSGG	1 cut(s)	733
BcoDI	GTCTC	3 cut(s)	490, 499, 552
BfaI	CTAG	2 cut(s)	615, 701
BglI	GCCNNNNNGGC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	4 cut(s)	166, 399, 402, 468
BlsI	GCNGC	4 cut(s)	167, 400, 403, 469
Bme1390I	CCNGG	5 cut(s)	300, 441, 461, 694, 733
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	12
BmgT120I	GGNCC	3 cut(s)	151, 295, 509
BmiI	GGNNCC	7 cut(s)	6, 152, 211, 297, 377, 445, 478
BmrFI	CCNGG	5 cut(s)	300, 441, 461, 694, 733
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	4 cut(s)	262, 601, 628, 722
BmuI	ACTGGG	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	733
BsaHI	GRCGYC	1 cut(s)	657
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 125, 259
Bse1I	ACTGG	2 cut(s)	120, 520
BseBI	CCWGG	4 cut(s)	300, 441, 461, 694
BseGI	GGATG	3 cut(s)	352, 524, 619
BseLI	CCNNNNNNNGG	3 cut(s)	14, 125, 259
BseNI	ACTGG	2 cut(s)	120, 520
BseRI	GAGGAG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	742
BseX3I	CGGCCG	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	388, 410, 454
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	9 cut(s)	18, 69, 81, 129, 153, 168, 180, 510, 692
BshNI	GGYRCC	3 cut(s)	4, 443, 476
BsiEI	CGRYCG	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	733
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	3 cut(s)	14, 125, 259
BsmAI	GTCTC	3 cut(s)	490, 499, 552
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	9 cut(s)	18, 69, 81, 129, 153, 168, 180, 510, 692
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	231, 742
Bsp143I	GATC	2 cut(s)	426, 685
BspACI	CCGC	4 cut(s)	163, 165, 207, 634
BspANI	GGCC	9 cut(s)	18, 69, 81, 129, 153, 168, 180, 510, 692
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	7 cut(s)	6, 152, 211, 297, 377, 445, 478
BspT107I	GGYRCC	3 cut(s)	4, 443, 476
BsrI	ACTGG	2 cut(s)	120, 520
BssMI	GATC	2 cut(s)	426, 685
BssNI	GRCGYC	1 cut(s)	657
BssT1I	CCWWGG	2 cut(s)	213, 447
Bst2UI	CCWGG	4 cut(s)	300, 441, 461, 694
Bst4CI	ACNGT	3 cut(s)	107, 140, 484
Bst6I	CTCTTC	3 cut(s)	169, 317, 575
BstACI	GRCGYC	1 cut(s)	657
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	3 cut(s)	258, 285, 576
BstDSI	CCRYGG	7 cut(s)	19, 82, 139, 154, 163, 169, 181
BstEII	GGTNACC	2 cut(s)	134, 158
BstENI	CCTNNNNNAGG	2 cut(s)	12, 257
BstF5I	GGATG	3 cut(s)	352, 524, 619
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	429, 688
BstMAI	GTCTC	3 cut(s)	490, 499, 552
BstMBI	GATC	2 cut(s)	426, 685
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 710
BstNI	CCWGG	4 cut(s)	300, 441, 461, 694
BstNSI	RCATGY	2 cut(s)	242, 640
BstPI	GGTNACC	2 cut(s)	134, 158
BstSCI	CCNGG	5 cut(s)	298, 439, 459, 692, 731
BstSLI	GKGCMC	1 cut(s)	742
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	388, 410, 454
BstX2I	RGATCY	1 cut(s)	426
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	426
BstZI	CGGCCG	1 cut(s)	166
BsuRI	GGCC	9 cut(s)	18, 69, 81, 129, 153, 168, 180, 510, 692
BtgI	CCRYGG	7 cut(s)	19, 82, 139, 154, 163, 169, 181
BtsCI	GGATG	3 cut(s)	352, 524, 619
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	3 cut(s)	112, 127, 537
Cac8I	GCNNGC	1 cut(s)	638
Cfr13I	GGNCC	3 cut(s)	151, 295, 509
Cfr42I	CCGCGG	1 cut(s)	166
CsiI	ACCWGGT	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	477
CviAII	CATG	6 cut(s)	239, 292, 491, 571, 637, 649
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	3 cut(s)	258, 285, 576
DpnI	GATC	2 cut(s)	428, 687
DpnII	GATC	2 cut(s)	426, 685
EaeI	YGGCCR	1 cut(s)	166
EagI	CGGCCG	1 cut(s)	166
Eam1104I	CTCTTC	3 cut(s)	169, 317, 575
EarI	CTCTTC	3 cut(s)	169, 317, 575
EciI	GGCGGA	1 cut(s)	222
EclXI	CGGCCG	1 cut(s)	166
Eco130I	CCWWGG	2 cut(s)	213, 447
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	295
Eco52I	CGGCCG	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	12
Eco91I	GGTNACC	2 cut(s)	134, 158
EcoNI	CCTNNNNNAGG	2 cut(s)	12, 257
EcoO65I	GGTNACC	2 cut(s)	134, 158
EcoRII	CCWGG	4 cut(s)	298, 439, 459, 692
EcoT14I	CCWWGG	2 cut(s)	213, 447
EcoT22I	ATGCAT	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	2 cut(s)	213, 447
FaeI	CATG	6 cut(s)	242, 295, 494, 574, 640, 652
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	6 cut(s)	238, 291, 490, 570, 636, 648
FblI	GTMKAC	2 cut(s)	312, 654
Fnu4HI	GCNGC	4 cut(s)	166, 399, 402, 468
FokI	GGATG	3 cut(s)	359, 531, 606
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	166, 399, 402, 468
FspBI	CTAG	2 cut(s)	615, 701
GluI	GCNGC	4 cut(s)	166, 399, 402, 468
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	9 cut(s)	18, 69, 81, 129, 153, 168, 180, 510, 692
HapII	CCGG	1 cut(s)	733
Hin1I	GRCGYC	1 cut(s)	657
Hin1II	CATG	6 cut(s)	242, 295, 494, 574, 640, 652
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	2 cut(s)	87, 697
HpaII	CCGG	1 cut(s)	733
HphI	GGTGA	3 cut(s)	104, 146, 170
Hpy166II	GTNNAC	3 cut(s)	313, 568, 655
Hpy188I	TCNGA	2 cut(s)	499, 670
Hpy188III	TCNNGA	1 cut(s)	430
Hpy8I	GTNNAC	3 cut(s)	313, 568, 655
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	2 cut(s)	42, 196
HpyCH4III	ACNGT	3 cut(s)	107, 140, 484
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	3 cut(s)	530, 677, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 710
HpyF3I	CTNAG	3 cut(s)	258, 285, 576
HpySE526I	ACGT	1 cut(s)	657
Hsp92I	GRCGYC	1 cut(s)	657
Hsp92II	CATG	6 cut(s)	242, 295, 494, 574, 640, 652
KpnI	GGTACC	1 cut(s)	480
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	426, 685
Lsp1109I	GCAGC	3 cut(s)	388, 410, 454
LweI	GCATC	4 cut(s)	262, 601, 628, 722
MabI	ACCWGGT	1 cut(s)	439
MaeI	CTAG	2 cut(s)	615, 701
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	5 cut(s)	92, 101, 134, 158, 280
MalI	GATC	2 cut(s)	428, 687
MboI	GATC	2 cut(s)	426, 685
MboII	GAAGA	5 cut(s)	186, 281, 334, 592, 620
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	2 cut(s)	231, 742
MluCI	AATT	1 cut(s)	600
MmeI	TCCRAC	1 cut(s)	522
Mph1103I	ATGCAT	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	3 cut(s)	114, 435, 726
MslI	CAYNNNNRTG	2 cut(s)	237, 549
MspA1I	CMGCKG	2 cut(s)	165, 401
MspI	CCGG	1 cut(s)	733
MspR9I	CCNGG	5 cut(s)	300, 441, 461, 694, 733
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	4 cut(s)	300, 441, 461, 694
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	186, 710
NciI	CCSGG	1 cut(s)	733
NdeII	GATC	2 cut(s)	426, 685
NlaIII	CATG	6 cut(s)	242, 295, 494, 574, 640, 652
NlaIV	GGNNCC	7 cut(s)	6, 152, 211, 297, 377, 445, 478
NmeAIII	GCCGAG	2 cut(s)	95, 155
NmuCI	GTSAC	4 cut(s)	92, 134, 158, 280
NsiI	ATGCAT	1 cut(s)	715
NspI	RCATGY	2 cut(s)	242, 640
PaeI	GCATGC	1 cut(s)	640
PaeR7I	CTCGAG	1 cut(s)	12
PctI	GAATGC	1 cut(s)	715
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	87, 697
PfoI	TCCNGGA	1 cut(s)	731
PkrI	GCNGC	4 cut(s)	167, 400, 403, 469
Psp6I	CCWGG	4 cut(s)	298, 439, 459, 692
PspEI	GGTNACC	2 cut(s)	134, 158
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	4 cut(s)	298, 439, 459, 692
PspN4I	GGNNCC	7 cut(s)	6, 152, 211, 297, 377, 445, 478
PspPI	GGNCC	3 cut(s)	151, 295, 509
PspXI	VCTCGAGB	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	426
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
RseI	CAYNNNNRTG	2 cut(s)	237, 549
SacII	CCGCGG	1 cut(s)	166
SalI	GTCGAC	1 cut(s)	653
SaqAI	TTAA	3 cut(s)	114, 435, 726
SatI	GCNGC	4 cut(s)	166, 399, 402, 468
Sau3AI	GATC	2 cut(s)	426, 685
Sau96I	GGNCC	3 cut(s)	151, 295, 509
ScrFI	CCNGG	5 cut(s)	300, 441, 461, 694, 733
SduI	GDGCHC	2 cut(s)	231, 742
SexAI	ACCWGGT	1 cut(s)	439
SfaNI	GCATC	4 cut(s)	262, 601, 628, 722
Sfr274I	CTCGAG	1 cut(s)	12
Sfr303I	CCGCGG	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	295
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	237, 549
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SphI	GCATGC	1 cut(s)	640
Sse9I	AATT	1 cut(s)	600
SsiI	CCGC	4 cut(s)	163, 165, 207, 634
SspMI	CTAG	2 cut(s)	615, 701
StyD4I	CCNGG	5 cut(s)	298, 439, 459, 692, 731
StyI	CCWWGG	2 cut(s)	213, 447
TaaI	ACNGT	3 cut(s)	107, 140, 484
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	2 cut(s)	13, 654
TasI	AATT	1 cut(s)	600
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	87, 697
Tru1I	TTAA	3 cut(s)	114, 435, 726
Tru9I	TTAA	3 cut(s)	114, 435, 726
TscAI	CASTG	3 cut(s)	112, 127, 537
TseFI	GTSAC	4 cut(s)	92, 134, 158, 280
TseI	GCWGC	3 cut(s)	398, 401, 467
Tsp45I	GTSAC	4 cut(s)	92, 134, 158, 280
TspDTI	ATGAA	1 cut(s)	215
TspGWI	ACGGA	2 cut(s)	322, 374
TspRI	CASTG	3 cut(s)	112, 127, 537
VpaK11BI	GGWCC	1 cut(s)	295
XagI	CCTNNNNNAGG	2 cut(s)	12, 257
XceI	RCATGY	2 cut(s)	242, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	12
XmiI	GTMKAC	2 cut(s)	312, 654
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	2 cut(s)	615, 701
ZraI	GACGTC	1 cut(s)	658
Zsp2I	ATGCAT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.