RLG00000026480

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
3287868 .. 3290992
3125 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026480

Sequence Viewer

Length: 942 bp
ATGGCACCTCCTCGAGGCCGTGGTGGGTTCAGGGGTGGAAGGAGTGATGGAGGGAGAGGCCGAGGTGGAGGCCGTGGATTCGGTGACAGAAGTAACAGTGGTTTTAAGCCCAGTGGAGGCCGAGGTGACCGTGGTGGTCGGGGCCGTGGTGACCGCGGCCGTGGAAGAGGTGGCCGTGGGGGTAGAGGAGGAATGAAGGGCGGAACTAAGGTTGTGGTTGAGCCCCATAGACATGCTGGGGTTTTCCTCGCTAAGGGTAAAGAAGATGCTCTTGTGACCAAGAACATGGTCCCTGGAGAAGCTGTCTACAATGAGAAGAGGATTTCCGTTCAGCAAGAGGATGGAACAAAAGTTGAGTACAGGATTTGGAACCCTTTCCGTTCCAAGTTGGCAGCTGCTATTCTTGGTGGTGTTGATGAGATCTGGATTAAACCTGGTGCCAAGGTTCTCTACCTGGGGGCTGCTTCTGGTACCACAGTCTCTCATGTCTCCGACATTGTTGGCCCTACTGGATGTGTCTATGCAGTGGAGTTTTCTCATAGAAGTGGCAGAGACTTGGTAAACATGGCTAAGAAGAGAACTAATGTCATACCAATTATTGAAGATGCTAGGCATCCAGCAAAATACCGTATGCTTGTTGGCATGGTTGACGTGATATTTTCTGATGTTGCACAACCCGATCAGGCCAGGATTCTAGCTTTGAATGCATCATATTTTCTTAAAGCCGGAGGGCACTTCGTCATCTCTATCAAGGCTAATTGTATCGACTGCACTGTTCCTGCTGAGGCAGTGTTCCAATCTGAGGTGAAGAAGCTGCAGGCAGAACAGTTTAAGCCTTTTGAACAAGTGACTCTTGAACCTTTTGAGCGTGATCATGCTTGTGTGATTGGTGGTTACCGCATGCCAAAGAAGTCAAAAGGCTACTGCCTAGAACGTCTCTAA

Protein Analysis

314

Amino Acids

33.74

Weight (kDa)

10.01

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fibrillarin PF01269 73 - 300 2.8e-109 Fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015862)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 12
Acc65I GGTACC 1 cut(s) 470
AccB1I GGYRCC 3 cut(s) 4, 437, 470
AccI GTMKAC 1 cut(s) 306
AccII CGCG 1 cut(s) 156
AciI CCGC 4 cut(s) 154, 156, 201, 898
AcoI YGGCCR 2 cut(s) 157, 172
AfaI GTAC 2 cut(s) 359, 472
AfiI CCNNNNNNNGG 4 cut(s) 14, 116, 253, 802
AgsI TTSAA 4 cut(s) 602, 703, 842, 857
AjiI CACGTC 1 cut(s) 652
AjnI CCWGG 4 cut(s) 292, 433, 453, 686
AluBI AGCT 4 cut(s) 302, 395, 698, 814
AluI AGCT 4 cut(s) 302, 395, 698, 814
Alw26I GTCTC 3 cut(s) 484, 493, 546
Ama87I CYCGRG 1 cut(s) 12
AoxI GGCC 9 cut(s) 16, 58, 70, 118, 142, 157, 172, 502, 684
ApeKI GCWGC 4 cut(s) 392, 395, 461, 814
Asp700I GAANNNNTTC 1 cut(s) 374
Asp718I GGTACC 1 cut(s) 470
AspS9I GGNCC 3 cut(s) 142, 289, 503
AsuHPI GGTGA 4 cut(s) 95, 137, 161, 817
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 735
BaeI ACNNNNGTAYC 2 cut(s) 462, 495
BanI GGYRCC 3 cut(s) 4, 437, 470
BanII GRGCYC 1 cut(s) 225
BbvCI CCTCAGC 1 cut(s) 783
BbvI GCAGC 4 cut(s) 382, 404, 448, 801
BccI CCATC 2 cut(s) 41, 335
BceAI ACGGC 5 cut(s) 3, 57, 129, 144, 159
BciT130I CCWGG 4 cut(s) 294, 435, 455, 688
BclI TGATCA 1 cut(s) 871
BcoDI GTCTC 3 cut(s) 484, 493, 546
BfaI CTAG 3 cut(s) 609, 695, 929
BfmI CTRYAG 1 cut(s) 815
BglII AGATCT 1 cut(s) 420
BisI GCNGC 5 cut(s) 157, 393, 396, 462, 815
BlsI GCNGC 5 cut(s) 158, 394, 397, 463, 816
Bme1390I CCNGG 4 cut(s) 294, 435, 455, 688
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 652
BmgT120I GGNCC 3 cut(s) 142, 289, 503
BmiI GGNNCC 6 cut(s) 6, 143, 291, 371, 439, 472
BmrFI CCNGG 4 cut(s) 294, 435, 455, 688
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 4 cut(s) 256, 595, 622, 716
BmuI ACTGGG 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 2 cut(s) 252, 783
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 116, 253, 802
Bse1I ACTGG 2 cut(s) 111, 514
BseBI CCWGG 4 cut(s) 294, 435, 455, 688
BseGI GGATG 3 cut(s) 346, 518, 613
BseLI CCNNNNNNNGG 4 cut(s) 14, 116, 253, 802
BseMII CTCAG 2 cut(s) 774, 792
BseNI ACTGG 2 cut(s) 111, 514
BseRI GAGGAG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 735
BseX3I CGGCCG 1 cut(s) 157
BseXI GCAGC 4 cut(s) 382, 404, 448, 801
BseYI CCCAGC 1 cut(s) 236
BsgI GTGCAG 1 cut(s) 754
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 9 cut(s) 18, 60, 72, 120, 144, 159, 174, 504, 686
BshNI GGYRCC 3 cut(s) 4, 437, 470
BsiEI CGRYCG 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 1 cut(s) 726
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 4 cut(s) 14, 116, 253, 802
BsmAI GTCTC 3 cut(s) 484, 493, 546
BsmFI GGGAC 1 cut(s) 275
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 9 cut(s) 18, 60, 72, 120, 144, 159, 174, 504, 686
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 2 cut(s) 225, 735
Bsp143I GATC 3 cut(s) 420, 679, 871
BspACI CCGC 4 cut(s) 154, 156, 201, 898
BspANI GGCC 9 cut(s) 18, 60, 72, 120, 144, 159, 174, 504, 686
BspCNI CTCAG 2 cut(s) 775, 793
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 6 cut(s) 6, 143, 291, 371, 439, 472
BspMAI CTGCAG 1 cut(s) 819
BspT107I GGYRCC 3 cut(s) 4, 437, 470
BsrI ACTGG 2 cut(s) 111, 514
BssMI GATC 3 cut(s) 420, 679, 871
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 4 cut(s) 294, 435, 455, 688
Bst4CI ACNGT 6 cut(s) 98, 131, 478, 629, 775, 828
Bst6I CTCTTC 3 cut(s) 160, 311, 569
BstC8I GCNNGC 2 cut(s) 819, 902
BstDEI CTNAG 5 cut(s) 207, 252, 570, 783, 801
BstDSI CCRYGG 7 cut(s) 19, 73, 130, 145, 154, 160, 175
BstEII GGTNACC 3 cut(s) 125, 149, 893
BstENI CCTNNNNNAGG 2 cut(s) 12, 251
BstF5I GGATG 3 cut(s) 346, 518, 613
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 3 cut(s) 423, 682, 874
BstMAI GTCTC 3 cut(s) 484, 493, 546
BstMBI GATC 3 cut(s) 420, 679, 871
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 704
BstNI CCWGG 4 cut(s) 294, 435, 455, 688
BstNSI RCATGY 2 cut(s) 236, 904
BstPI GGTNACC 3 cut(s) 125, 149, 893
BstSCI CCNGG 4 cut(s) 292, 433, 453, 686
BstSFI CTRYAG 1 cut(s) 815
BstSLI GKGCMC 1 cut(s) 735
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 4 cut(s) 382, 404, 448, 801
BstX2I RGATCY 1 cut(s) 420
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 1 cut(s) 420
BstZI CGGCCG 1 cut(s) 157
BsuRI GGCC 9 cut(s) 18, 60, 72, 120, 144, 159, 174, 504, 686
BtgI CCRYGG 7 cut(s) 19, 73, 130, 145, 154, 160, 175
BtrI CACGTC 1 cut(s) 652
BtsCI GGATG 3 cut(s) 346, 518, 613
BtsI GCAGTG 2 cut(s) 531, 795
BtsIMutI CAGTG 5 cut(s) 103, 118, 531, 771, 795
Cac8I GCNNGC 2 cut(s) 819, 902
Cfr13I GGNCC 3 cut(s) 142, 289, 503
Cfr42I CCGCGG 1 cut(s) 157
CsiI ACCWGGT 1 cut(s) 433
Csp6I GTAC 2 cut(s) 358, 471
CviAII CATG 7 cut(s) 233, 286, 485, 565, 643, 875, 901
CviQI GTAC 2 cut(s) 358, 471
DdeI CTNAG 5 cut(s) 207, 252, 570, 783, 801
DpnI GATC 3 cut(s) 422, 681, 873
DpnII GATC 3 cut(s) 420, 679, 871
EaeI YGGCCR 2 cut(s) 157, 172
EagI CGGCCG 1 cut(s) 157
Eam1104I CTCTTC 3 cut(s) 160, 311, 569
EarI CTCTTC 3 cut(s) 160, 311, 569
EciI GGCGGA 1 cut(s) 216
EclXI CGGCCG 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 289
Eco52I CGGCCG 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 12
Eco91I GGTNACC 3 cut(s) 125, 149, 893
EcoNI CCTNNNNNAGG 2 cut(s) 12, 251
EcoO65I GGTNACC 3 cut(s) 125, 149, 893
EcoRII CCWGG 4 cut(s) 292, 433, 453, 686
EcoT14I CCWWGG 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 709
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 7 cut(s) 236, 289, 488, 568, 646, 878, 904
FalI AAGNNNNNCTT 4 cut(s) 255, 287, 837, 869
FaqI GGGAC 1 cut(s) 275
FatI CATG 7 cut(s) 232, 285, 484, 564, 642, 874, 900
FbaI TGATCA 1 cut(s) 871
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 5 cut(s) 157, 393, 396, 462, 815
FokI GGATG 3 cut(s) 353, 525, 600
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 5 cut(s) 157, 393, 396, 462, 815
FspBI CTAG 3 cut(s) 609, 695, 929
GluI GCNGC 5 cut(s) 157, 393, 396, 462, 815
GsaI CCCAGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 9 cut(s) 18, 60, 72, 120, 144, 159, 174, 504, 686
HapII CCGG 1 cut(s) 726
Hin1II CATG 7 cut(s) 236, 289, 488, 568, 646, 878, 904
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 3 cut(s) 78, 691, 850
HpaII CCGG 1 cut(s) 726
HphI GGTGA 4 cut(s) 95, 137, 161, 817
Hpy166II GTNNAC 3 cut(s) 307, 562, 649
Hpy188I TCNGA 3 cut(s) 493, 664, 802
Hpy188III TCNNGA 2 cut(s) 424, 854
Hpy8I GTNNAC 3 cut(s) 307, 562, 649
HpyAV CCTTC 2 cut(s) 33, 190
HpyCH4III ACNGT 6 cut(s) 98, 131, 478, 629, 775, 828
HpyCH4IV ACGT 2 cut(s) 651, 934
HpyCH4V TGCA 5 cut(s) 524, 671, 707, 771, 817
HpyF10VI GCNNNNNNNGC 1 cut(s) 704
HpyF3I CTNAG 5 cut(s) 207, 252, 570, 783, 801
HpySE526I ACGT 2 cut(s) 651, 934
Hsp92II CATG 7 cut(s) 236, 289, 488, 568, 646, 878, 904
KpnI GGTACC 1 cut(s) 474
Ksp22I TGATCA 1 cut(s) 871
KspI CCGCGG 1 cut(s) 157
Kzo9I GATC 3 cut(s) 420, 679, 871
Lsp1109I GCAGC 4 cut(s) 382, 404, 448, 801
LweI GCATC 4 cut(s) 256, 595, 622, 716
MabI ACCWGGT 1 cut(s) 433
MaeI CTAG 3 cut(s) 609, 695, 929
MaeII ACGT 2 cut(s) 651, 934
MaeIII GTNAC 7 cut(s) 83, 92, 125, 149, 274, 847, 893
MalI GATC 3 cut(s) 422, 681, 873
MboI GATC 3 cut(s) 420, 679, 871
MboII GAAGA 6 cut(s) 177, 275, 328, 586, 614, 820
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 225, 735
MluCI AATT 2 cut(s) 594, 757
MlyI GAGTC 1 cut(s) 844
MmeI TCCRAC 1 cut(s) 516
Mph1103I ATGCAT 1 cut(s) 709
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 4 cut(s) 105, 429, 720, 831
MslI CAYNNNNRTG 3 cut(s) 231, 543, 879
MspA1I CMGCKG 2 cut(s) 156, 395
MspI CCGG 1 cut(s) 726
MspR9I CCNGG 4 cut(s) 294, 435, 455, 688
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 4 cut(s) 294, 435, 455, 688
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 704
NdeII GATC 3 cut(s) 420, 679, 871
NlaIII CATG 7 cut(s) 236, 289, 488, 568, 646, 878, 904
NlaIV GGNNCC 6 cut(s) 6, 143, 291, 371, 439, 472
NmeAIII GCCGAG 2 cut(s) 86, 146
NmuCI GTSAC 5 cut(s) 83, 125, 149, 274, 847
NsiI ATGCAT 1 cut(s) 709
NspI RCATGY 2 cut(s) 236, 904
PaeI GCATGC 1 cut(s) 904
PaeR7I CTCGAG 1 cut(s) 12
PctI GAATGC 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 78, 691
PkrI GCNGC 5 cut(s) 158, 394, 397, 463, 816
PleI GAGTC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 844
Psp6I CCWGG 4 cut(s) 292, 433, 453, 686
PspEI GGTNACC 3 cut(s) 125, 149, 893
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 4 cut(s) 292, 433, 453, 686
PspN4I GGNNCC 6 cut(s) 6, 143, 291, 371, 439, 472
PspPI GGNCC 3 cut(s) 142, 289, 503
PspXI VCTCGAGB 1 cut(s) 12
PstI CTGCAG 1 cut(s) 819
PsuI RGATCY 1 cut(s) 420
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 359, 472
RsaNI GTAC 2 cut(s) 358, 471
RseI CAYNNNNRTG 3 cut(s) 231, 543, 879
SacII CCGCGG 1 cut(s) 157
SaqAI TTAA 4 cut(s) 105, 429, 720, 831
SatI GCNGC 5 cut(s) 157, 393, 396, 462, 815
Sau3AI GATC 3 cut(s) 420, 679, 871
Sau96I GGNCC 3 cut(s) 142, 289, 503
SchI GAGTC 1 cut(s) 844
ScrFI CCNGG 4 cut(s) 294, 435, 455, 688
SduI GDGCHC 2 cut(s) 225, 735
SexAI ACCWGGT 1 cut(s) 433
SfaNI GCATC 4 cut(s) 256, 595, 622, 716
SfcI CTRYAG 1 cut(s) 815
Sfr274I CTCGAG 1 cut(s) 12
Sfr303I CCGCGG 1 cut(s) 157
SgrBI CCGCGG 1 cut(s) 157
SinI GGWCC 1 cut(s) 289
SlaI CTCGAG 1 cut(s) 12
SmiMI CAYNNNNRTG 3 cut(s) 231, 543, 879
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
SphI GCATGC 1 cut(s) 904
Sse9I AATT 2 cut(s) 594, 757
SsiI CCGC 4 cut(s) 154, 156, 201, 898
SspMI CTAG 3 cut(s) 609, 695, 929
StyD4I CCNGG 4 cut(s) 292, 433, 453, 686
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 6 cut(s) 98, 131, 478, 629, 775, 828
TaiI ACGT 2 cut(s) 654, 937
TaqI TCGA 2 cut(s) 13, 765
TasI AATT 2 cut(s) 594, 757
TatI WGTACW 1 cut(s) 357
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 2 cut(s) 78, 691
Tru1I TTAA 4 cut(s) 105, 429, 720, 831
Tru9I TTAA 4 cut(s) 105, 429, 720, 831
TscAI CASTG 5 cut(s) 103, 118, 531, 778, 795
TseFI GTSAC 5 cut(s) 83, 125, 149, 274, 847
TseI GCWGC 4 cut(s) 392, 395, 461, 814
Tsp45I GTSAC 5 cut(s) 83, 125, 149, 274, 847
TspDTI ATGAA 1 cut(s) 209
TspGWI ACGGA 2 cut(s) 316, 368
TspRI CASTG 5 cut(s) 103, 118, 531, 778, 795
VpaK11BI GGWCC 1 cut(s) 289
XagI CCTNNNNNAGG 2 cut(s) 12, 251
XceI RCATGY 2 cut(s) 236, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 3 cut(s) 609, 695, 929
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.