FvH4_7g30210

septum site-determining protein minD homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
22065834 .. 22067252
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30210.t1

Sequence Viewer

Length: 987 bp
ATGCTCGCCCTTCACCTCCTCCCCGCCCTCAATCCCAAACCCTCCTTCACCCCAAACCGCGGCGCCGCCGCCCTTAAACCCTTCCGCAACCCCAAAACCCTAAAACCCAACTCCTCCCCCTTCACCGTCCGCTCCCTCCTCCAATACAACCGCAAGCCCCAGCTCTCCGGCGACACCCCCCGCGTCGTCGTCATCACCTCCGGCAAAGGCGGCGTCGGCAAGACCACCACCACCGCCAATGTCGGCCTCTCCCTCGCCCGCTTCGGCTTCTCCGTCGTCGCCATCGACGCCGACGTCGGCCTCCGCAACCTCGACCTCCTCCTCGGCCTCGAGAATCGCGTCAACTACACCGTCGTCGAGGTCCTCAACGGCGACTGCCGCCTCGACCAGGCTCTCGTTCGTGACAAGCGCTGGTCCAACTTCGAATTACTCTGCATTTCCAAGCCCAGATCCAAATTGCCGATGGGATTCGGCGGCAAAGCCCTCGTCTGGGTCGTCGACGCGTTGAAGGCCCGGCCGGAAGGGTCCCCGGACTTCATCCTCATCGACTGCCCGGCCGGCATTGATGCCGGGTTCATCACCGCAATCACTCCGGCCAATGAGGCCGTGCTGGTGACCACACCGGACATTACCAGCTTGCGAGATGCCGACAGAGTCATTGGGCTGCTGGAGTGTGATGGAATTAGGGACATTAAGATGATGGTGAACCGGGTTCGGACTGATATGATCAAAGGGGAGGACATGATGTCTGTGCTGGACGTGCAGGAGATGCTGGGATTGTCGTTGTTGGGGATGATTCCGGAGGACACGGAGGTGATTCGGAGTACTAATAGAGGGTACCCTCTGGTTTTGAATAGGCCACCCACATTGGCTGGACTGGCTTTTGAGCAGGCGGCGTGGAGGCTTGTTGAGCAGGACACTATGAAGGCTGTCATGGTTGAGGAAGAGCCTAAGAAACGCAGCTTCTTCTCATTTTTCGGAGGGTGA

Protein Analysis

329

Amino Acids

35.85

Weight (kDa)

8.85

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ParA PF10609 61 - 299 5.3e-17 NUBPL iron-transfer P-loop NTPase
AAA_31 PF13614 61 - 214 6.5e-14 AAA domain
MipZ PF09140 61 - 212 4.4e-07 ATPase MipZ
CbiA PF01656 63 - 281 1.2e-19 CobQ/CobB/MinD/ParA nucleotide binding domain
Fer4_NifH PF00142 67 - 306 1.2e-07 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24020
fragaria_vesca FvH4_7g30210
malus_domestica MD07G1278700.v1.1
prunus_persica Prupe.2G300600_v2.0.a1
pyrus_communis pycom07g25360
rosa_chinensis RchiOBHm_Chr1g0378251
rosa_laevigata RLG00000026456
rosa_multiflora Rmu_sc0006315.1_g000003 Rmu_sc0038642.1_g000001
rosa_roxburghii Rroxscaffold_4G00280610
rosa_rugosa Rorug01G0407500
rosa_samantha Rh1AG422300
rosa_wichuraiana Rw1G037530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AatII GACGTC 1 cut(s) 297
Acc65I GGTACC 1 cut(s) 837
AccB1I GGYRCC 2 cut(s) 62, 837
AccBSI CCGCTC 1 cut(s) 132
AccI GTMKAC 1 cut(s) 498
AccII CGCG 4 cut(s) 60, 183, 339, 503
AccIII TCCGGA 1 cut(s) 799
AclWI GGATC 1 cut(s) 444
AcoI YGGCCR 3 cut(s) 515, 555, 594
AcyI GRCGYC 4 cut(s) 63, 213, 288, 294
AfaI GTAC 2 cut(s) 826, 839
AfeI AGCGCT 1 cut(s) 410
AfiI CCNNNNNNNGG 4 cut(s) 59, 388, 489, 490
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 2 cut(s) 508, 853
AhdI GACNNNNNGTC 1 cut(s) 745
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 1 cut(s) 387
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AleI CACNNNNGTG 1 cut(s) 812
AluBI AGCT 3 cut(s) 163, 636, 963
AluI AGCT 3 cut(s) 163, 636, 963
AlwI GGATC 1 cut(s) 444
Ama87I CYCGRG 1 cut(s) 329
Aor13HI TCCGGA 1 cut(s) 799
Aor51HI AGCGCT 1 cut(s) 410
AoxI GGCC 9 cut(s) 244, 298, 325, 510, 515, 555, 594, 603, 857
ApeKI GCWGC 2 cut(s) 664, 960
ArsI GACNNNNNNTTYG 4 cut(s) 198, 230, 471, 503
Asp718I GGTACC 1 cut(s) 837
AspLEI GCGC 2 cut(s) 65, 411
AspS9I GGNCC 4 cut(s) 361, 414, 511, 525
AsuC2I CCSGG 5 cut(s) 514, 530, 554, 571, 710
AsuHPI GGTGA 8 cut(s) 5, 40, 115, 187, 571, 625, 715, 826
AsuII TTCGAA 1 cut(s) 423
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 3 cut(s) 361, 414, 525
BanI GGYRCC 2 cut(s) 62, 837
BbvI GCAGC 2 cut(s) 651, 972
BccI CCATC 4 cut(s) 290, 457, 671, 694
BceAI ACGGC 2 cut(s) 385, 590
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BciT130I CCWGG 1 cut(s) 389
BclI TGATCA 1 cut(s) 726
BcnI CCSGG 5 cut(s) 514, 530, 554, 571, 710
BfoI RGCGCY 2 cut(s) 66, 412
BglI GCCNNNNNGGC 2 cut(s) 558, 602
BisI GCNGC 9 cut(s) 61, 66, 69, 211, 379, 475, 665, 894, 961
BlsI GCNGC 9 cut(s) 62, 67, 70, 212, 380, 476, 666, 895, 962
BmcAI AGTACT 1 cut(s) 826
Bme1390I CCNGG 6 cut(s) 389, 514, 530, 554, 571, 710
Bme18I GGWCC 3 cut(s) 361, 414, 525
BmeRI GACNNNNNGTC 1 cut(s) 745
BmeT110I CYCGRG 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 4 cut(s) 361, 414, 511, 525
BmiI GGNNCC 4 cut(s) 64, 526, 527, 839
BmrFI CCNGG 6 cut(s) 389, 514, 530, 554, 571, 710
BmsI GCATC 3 cut(s) 556, 634, 759
BpmI CTGGAG 1 cut(s) 689
Bpu14I TTCGAA 1 cut(s) 423
BpuMI CCSGG 5 cut(s) 514, 530, 554, 571, 710
BsaHI GRCGYC 4 cut(s) 63, 213, 288, 294
BsaJI CCNNGG 3 cut(s) 58, 322, 528
BsaWI WCCGGW 2 cut(s) 622, 799
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 388, 489, 490
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 1 cut(s) 882
BseAI TCCGGA 1 cut(s) 799
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 3 cut(s) 58, 322, 528
BseGI GGATG 2 cut(s) 537, 798
BseLI CCNNNNNNNGG 4 cut(s) 59, 388, 489, 490
BseNI ACTGG 1 cut(s) 882
BseRI GAGGAG 5 cut(s) 8, 103, 128, 308, 311
BseX3I CGGCCG 2 cut(s) 515, 555
BseXI GCAGC 2 cut(s) 651, 972
BseYI CCCAGC 2 cut(s) 159, 772
BsgI GTGCAG 1 cut(s) 782
Bsh1236I CGCG 4 cut(s) 60, 183, 339, 503
Bsh1285I CGRYCG 2 cut(s) 518, 558
BshFI GGCC 9 cut(s) 246, 300, 327, 512, 517, 557, 596, 605, 859
BshNI GGYRCC 2 cut(s) 62, 837
BsiEI CGRYCG 2 cut(s) 518, 558
BsiHKCI CYCGRG 1 cut(s) 329
BslFI GGGAC 2 cut(s) 511, 701
BslI CCNNNNNNNGG 4 cut(s) 59, 388, 489, 490
BsmFI GGGAC 2 cut(s) 511, 701
BsnI GGCC 9 cut(s) 246, 300, 327, 512, 517, 557, 596, 605, 859
BsoBI CYCGRG 1 cut(s) 329
Bsp119I TTCGAA 1 cut(s) 423
Bsp13I TCCGGA 1 cut(s) 799
Bsp143I GATC 2 cut(s) 449, 726
BspANI GGCC 9 cut(s) 246, 300, 327, 512, 517, 557, 596, 605, 859
BspEI TCCGGA 1 cut(s) 799
BspFNI CGCG 4 cut(s) 60, 183, 339, 503
BspLI GGNNCC 4 cut(s) 64, 526, 527, 839
BspPI GGATC 1 cut(s) 444
BspQI GCTCTTC 1 cut(s) 939
BspT104I TTCGAA 1 cut(s) 423
BspT107I GGYRCC 2 cut(s) 62, 837
BsrBI CCGCTC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 1 cut(s) 882
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 3 cut(s) 58, 322, 528
BssMI GATC 2 cut(s) 449, 726
BssNI GRCGYC 4 cut(s) 63, 213, 288, 294
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 2 cut(s) 127, 352
Bst6I CTCTTC 1 cut(s) 939
BstACI GRCGYC 4 cut(s) 63, 213, 288, 294
BstAPI GCANNNNNTGC 1 cut(s) 769
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 6 cut(s) 6, 155, 259, 559, 638, 891
BstDEI CTNAG 1 cut(s) 951
BstDSI CCRYGG 1 cut(s) 58
BstEII GGTNACC 1 cut(s) 613
BstENI CCTNNNNNAGG 1 cut(s) 386
BstF5I GGATG 2 cut(s) 537, 798
BstFNI CGCG 4 cut(s) 60, 183, 339, 503
BstH2I RGCGCY 2 cut(s) 66, 412
BstHHI GCGC 2 cut(s) 65, 411
BstKTI GATC 2 cut(s) 452, 729
BstMBI GATC 2 cut(s) 449, 726
BstMCI CGRYCG 2 cut(s) 518, 558
BstNI CCWGG 1 cut(s) 389
BstPI GGTNACC 1 cut(s) 613
BstSCI CCNGG 6 cut(s) 387, 512, 528, 552, 569, 708
BstUI CGCG 4 cut(s) 60, 183, 339, 503
BstV1I GCAGC 2 cut(s) 651, 972
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BstZI CGGCCG 2 cut(s) 515, 555
BsuRI GGCC 9 cut(s) 246, 300, 327, 512, 517, 557, 596, 605, 859
BtgI CCRYGG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 2 cut(s) 537, 798
Cac8I GCNNGC 6 cut(s) 6, 155, 259, 559, 638, 891
CfoI GCGC 2 cut(s) 65, 411
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 4 cut(s) 361, 414, 511, 525
Cfr42I CCGCGG 1 cut(s) 61
CseI GACGC 5 cut(s) 172, 202, 296, 328, 509
Csp6I GTAC 2 cut(s) 825, 838
CspCI CAANNNNNGTGG 2 cut(s) 849, 884
CviAII CATG 2 cut(s) 742, 934
CviQI GTAC 2 cut(s) 825, 838
DdeI CTNAG 1 cut(s) 951
DinI GGCGCC 1 cut(s) 64
DpnI GATC 2 cut(s) 451, 728
DpnII GATC 2 cut(s) 449, 726
DrdI GACNNNNNNGTC 1 cut(s) 293
DriI GACNNNNNGTC 1 cut(s) 745
DseDI GACNNNNNNGTC 1 cut(s) 293
EaeI YGGCCR 3 cut(s) 515, 555, 594
EagI CGGCCG 2 cut(s) 515, 555
Eam1104I CTCTTC 1 cut(s) 939
Eam1105I GACNNNNNGTC 1 cut(s) 745
EarI CTCTTC 1 cut(s) 939
EclXI CGGCCG 2 cut(s) 515, 555
Eco47I GGWCC 3 cut(s) 361, 414, 525
Eco47III AGCGCT 1 cut(s) 410
Eco52I CGGCCG 2 cut(s) 515, 555
Eco88I CYCGRG 1 cut(s) 329
Eco91I GGTNACC 1 cut(s) 613
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoO109I RGGNCCY 2 cut(s) 361, 525
EcoO65I GGTNACC 1 cut(s) 613
EcoRII CCWGG 1 cut(s) 387
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
FaeI CATG 2 cut(s) 745, 937
FaiI YATR 4 cut(s) 725, 743, 923, 935
FaqI GGGAC 2 cut(s) 511, 701
FatI CATG 2 cut(s) 741, 933
FauI CCCGC 3 cut(s) 31, 188, 266
FbaI TGATCA 1 cut(s) 726
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 9 cut(s) 61, 66, 69, 211, 379, 475, 665, 894, 961
FokI GGATG 2 cut(s) 524, 805
Fsp4HI GCNGC 9 cut(s) 61, 66, 69, 211, 379, 475, 665, 894, 961
GlaI GCGC 2 cut(s) 64, 410
GluI GCNGC 9 cut(s) 61, 66, 69, 211, 379, 475, 665, 894, 961
GsaI CCCAGC 2 cut(s) 163, 776
GsuI CTGGAG 1 cut(s) 689
HaeII RGCGCY 2 cut(s) 66, 412
HaeIII GGCC 9 cut(s) 246, 300, 327, 512, 517, 557, 596, 605, 859
HgaI GACGC 5 cut(s) 172, 202, 296, 328, 509
HhaI GCGC 2 cut(s) 65, 411
Hin1I GRCGYC 4 cut(s) 63, 213, 288, 294
Hin1II CATG 2 cut(s) 745, 937
Hin6I GCGC 2 cut(s) 63, 409
HinP1I GCGC 2 cut(s) 63, 409
HincII GTYRAC 2 cut(s) 343, 499
HindII GTYRAC 2 cut(s) 343, 499
HinfI GANTC 5 cut(s) 334, 468, 654, 796, 817
HphI GGTGA 8 cut(s) 5, 40, 115, 187, 571, 625, 715, 826
Hpy166II GTNNAC 3 cut(s) 343, 499, 706
Hpy188I TCNGA 3 cut(s) 717, 822, 980
Hpy188III TCNNGA 3 cut(s) 331, 401, 800
Hpy8I GTNNAC 3 cut(s) 343, 499, 706
HpyAV CCTTC 7 cut(s) 20, 55, 91, 130, 502, 515, 919
HpyCH4III ACNGT 2 cut(s) 127, 352
HpyCH4IV ACGT 2 cut(s) 294, 759
HpyCH4V TGCA 2 cut(s) 435, 763
HpyF3I CTNAG 1 cut(s) 951
HpySE526I ACGT 2 cut(s) 294, 759
Hsp92I GRCGYC 4 cut(s) 63, 213, 288, 294
Hsp92II CATG 2 cut(s) 745, 937
HspAI GCGC 2 cut(s) 63, 409
KasI GGCGCC 1 cut(s) 62
KflI GGGWCCC 1 cut(s) 525
Kpn2I TCCGGA 1 cut(s) 799
KpnI GGTACC 1 cut(s) 841
KroI GCCGGC 1 cut(s) 557
KroNI GCCGGC 1 cut(s) 559
Ksp22I TGATCA 1 cut(s) 726
KspI CCGCGG 1 cut(s) 61
Kzo9I GATC 2 cut(s) 449, 726
LguI GCTCTTC 1 cut(s) 939
LmnI GCTCC 1 cut(s) 137
Lsp1109I GCAGC 2 cut(s) 651, 972
LweI GCATC 3 cut(s) 556, 634, 759
MaeII ACGT 2 cut(s) 294, 759
MaeIII GTNAC 2 cut(s) 401, 613
MalI GATC 2 cut(s) 451, 728
MbiI CCGCTC 1 cut(s) 132
MboI GATC 2 cut(s) 449, 726
MboII GAAGA 2 cut(s) 956, 958
MflI RGATCY 1 cut(s) 449
MluCI AATT 3 cut(s) 425, 455, 681
MluI ACGCGT 1 cut(s) 501
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 1 cut(s) 663
MmeI TCCRAC 1 cut(s) 441
MroI TCCGGA 1 cut(s) 799
MroNI GCCGGC 1 cut(s) 557
MseI TTAA 2 cut(s) 75, 693
MslI CAYNNNNRTG 2 cut(s) 695, 812
MspA1I CMGCKG 1 cut(s) 60
MspR9I CCNGG 6 cut(s) 389, 514, 530, 554, 571, 710
MvaI CCWGG 1 cut(s) 389
MvnI CGCG 4 cut(s) 60, 183, 339, 503
NaeI GCCGGC 1 cut(s) 559
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 5 cut(s) 514, 530, 554, 571, 710
NdeII GATC 2 cut(s) 449, 726
NgoMIV GCCGGC 1 cut(s) 557
NlaIII CATG 2 cut(s) 745, 937
NlaIV GGNNCC 4 cut(s) 64, 526, 527, 839
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 401, 613
NspV TTCGAA 1 cut(s) 423
OliI CACNNNNGTG 1 cut(s) 812
PaeR7I CTCGAG 1 cut(s) 329
PciSI GCTCTTC 1 cut(s) 939
PcsI WCGNNNNNNNCGW 5 cut(s) 270, 282, 291, 336, 492
PdiI GCCGGC 1 cut(s) 559
PfeI GAWTC 4 cut(s) 334, 468, 796, 817
PflFI GACNNNGTC 1 cut(s) 653
PkrI GCNGC 9 cut(s) 62, 67, 70, 212, 380, 476, 666, 895, 962
PleI GAGTC 1 cut(s) 662
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 662
PpuMI RGGWCCY 2 cut(s) 361, 525
Psp5II RGGWCCY 2 cut(s) 361, 525
Psp6I CCWGG 1 cut(s) 387
PspEI GGTNACC 1 cut(s) 613
PspFI CCCAGC 2 cut(s) 159, 772
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 4 cut(s) 64, 526, 527, 839
PspPI GGNCC 4 cut(s) 361, 414, 511, 525
PspPPI RGGWCCY 2 cut(s) 361, 525
PsuI RGATCY 1 cut(s) 449
PsyI GACNNNGTC 1 cut(s) 653
RsaI GTAC 2 cut(s) 826, 839
RsaNI GTAC 2 cut(s) 825, 838
RseI CAYNNNNRTG 2 cut(s) 695, 812
SacII CCGCGG 1 cut(s) 61
SalI GTCGAC 1 cut(s) 497
SapI GCTCTTC 1 cut(s) 939
SaqAI TTAA 2 cut(s) 75, 693
SatI GCNGC 9 cut(s) 61, 66, 69, 211, 379, 475, 665, 894, 961
Sau3AI GATC 2 cut(s) 449, 726
Sau96I GGNCC 4 cut(s) 361, 414, 511, 525
ScaI AGTACT 1 cut(s) 826
SchI GAGTC 1 cut(s) 663
ScrFI CCNGG 6 cut(s) 389, 514, 530, 554, 571, 710
SfaNI GCATC 3 cut(s) 556, 634, 759
SfiI GGCCNNNNNGGCC 1 cut(s) 602
SfoI GGCGCC 1 cut(s) 64
Sfr274I CTCGAG 1 cut(s) 329
Sfr303I CCGCGG 1 cut(s) 61
SfuI TTCGAA 1 cut(s) 423
SgrBI CCGCGG 1 cut(s) 61
SgrDI CGTCGACG 1 cut(s) 497
SinI GGWCC 3 cut(s) 361, 414, 525
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 695, 812
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 3 cut(s) 425, 455, 681
SspDI GGCGCC 1 cut(s) 62
StyD4I CCNGG 6 cut(s) 387, 512, 528, 552, 569, 708
TaaI ACNGT 2 cut(s) 127, 352
TaiI ACGT 2 cut(s) 297, 762
TaqI TCGA 8 cut(s) 285, 312, 330, 357, 384, 423, 498, 546
TasI AATT 3 cut(s) 425, 455, 681
TatI WGTACW 1 cut(s) 824
TauI GCSGC 7 cut(s) 63, 68, 71, 213, 381, 477, 896
TfiI GAWTC 4 cut(s) 334, 468, 796, 817
Tru1I TTAA 2 cut(s) 75, 693
Tru9I TTAA 2 cut(s) 75, 693
TseFI GTSAC 2 cut(s) 401, 613
TseI GCWGC 2 cut(s) 664, 960
Tsp45I GTSAC 2 cut(s) 401, 613
TspDTI ATGAA 3 cut(s) 526, 565, 938
TspGWI ACGGA 2 cut(s) 262, 824
Tth111I GACNNNGTC 1 cut(s) 653
VpaK11BI GGWCC 3 cut(s) 361, 414, 525
XagI CCTNNNNNAGG 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XhoI CTCGAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 498
ZraI GACGTC 1 cut(s) 295
ZrmI AGTACT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.