Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0017186

Physical Location & Seq

Genomic Coordinates Forward (+)

34332250 .. 34333278

Gene Structure 1029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1278700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCTCTCTCTTCAACTCCTGCCCGCCCTCCTCAGCCCCAAGCCCTCTTCCTCCCTCACCGCCGCAAACCCACCAAAAACCTTTAAACCCAAAACCCTAAAACCCAAACCTTCTCCCACCTTCACAGTCCGCGCCATCCTCCAATACAACAGGAAGCCCCAATTGTCCGGCGACACCCCCCGCGTCGTCGTCATCACCTCTGGAAAAGGAGGCGTCGGCAAGACCACCACCACCGCCAATGTCGGCCTCTCCCTCGCCCGCCTCGGCTTCTCTGTCGTCGCCATCGACGCCGACGTCGGCCTCCGCAACCTCGACCTCCTGCTCGGCCTCGAGAACCGCGTCAACTACACCGTCGTCGAGGTCCTCAACGGCGACTGCCGCCTCGACCAGGCGCTCGTCAGGGACAAGCGTTGGTCCAACTTCGAATTGCTCTGCATCTCAAAGCCCCGGTCCAAATTACCAATGGGGTTCGGCGGCAAGGCCCTGGTCTGGGTCGTCGACGCTTTGAAAGCCAGGCAAGAGGGCTGCCCGGACTTCATCCTCATCGACTGCCCCGCCGGAATCGACGCCGGCTTCATCACCGCCATTACGCCGGCCAATGAGGCCGTGCTGGTGACCACGCCGGACATCACGAGCTTGAGAGACGCTGACAGAGTCATTGGGCTGCTGGAGTGTGATGGGATTAGGGATATAAAGATGATGGTGAACCGGGTCCGGACAGATATGATCAAGGGGGAGGACATGATGTCCGTGCTCGATGTGCAGGAGATGTTGGGATTGGCATTGTTGGGGATGATTCCGGAGGACACGGAGGTCATCAGAAGCACCAACAGAGGGTACCCTCTGGTTTTGAATAGGCCGCCTACATTGGCAGGACTGGCTTTCGAGCAGGCGGCGTGGAGGCTTGTTGAGCAGGATAGTATGCAGGCTGTCATGGTGGAGGAAGAGCCCAAGAAGCGTGGCTTCTTCTCGTTTTTCGGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030899 GO:0031967 GO:0031975 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiA

Protein Analysis

329

Amino Acids

35.71

Weight (kDa)

8.55

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	61 - 299	3.7e-17	NUBPL iron-transfer P-loop NTPase
AAA_31	PF13614	61 - 214	2e-14	AAA domain
MipZ	PF09140	61 - 212	2.3e-07	ATPase MipZ
CbiA	PF01656	63 - 281	1.3e-19	CobQ/CobB/MinD/ParA nucleotide binding domain
Fer4_NifH	PF00142	67 - 306	1.2e-07	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24020
fragaria_vesca	FvH4_7g30210
malus_domestica	MD07G1278700.v1.1
prunus_persica	Prupe.2G300600_v2.0.a1
pyrus_communis	pycom07g25360
rosa_chinensis	RchiOBHm_Chr1g0378251
rosa_laevigata	RLG00000026456
rosa_multiflora	Rmu_sc0006315.1_g000003 Rmu_sc0038642.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280610
rosa_rugosa	Rorug01G0407500
rosa_samantha	Rh1AG422300
rosa_wichuraiana	Rw1G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	293, 812
AatII	GACGTC	1 cut(s)	297
Acc65I	GGTACC	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	837
AccI	GTMKAC	1 cut(s)	498
AccII	CGCG	3 cut(s)	132, 183, 339
AccIII	TCCGGA	2 cut(s)	714, 799
AcoI	YGGCCR	1 cut(s)	594
AcyI	GRCGYC	4 cut(s)	213, 288, 294, 567
AfaI	GTAC	1 cut(s)	839
AfiI	CCNNNNNNNGG	4 cut(s)	388, 489, 490, 834
AgsI	TTSAA	3 cut(s)	14, 508, 853
AhdI	GACNNNNNGTC	1 cut(s)	745
AjnI	CCWGG	3 cut(s)	387, 483, 512
AluBI	AGCT	1 cut(s)	636
AluI	AGCT	1 cut(s)	636
Alw21I	GWGCWC	1 cut(s)	756
Alw26I	GTCTC	1 cut(s)	636
Ama87I	CYCGRG	1 cut(s)	329
Aor13HI	TCCGGA	2 cut(s)	714, 799
AoxI	GGCC	7 cut(s)	244, 298, 325, 480, 594, 603, 857
ApeKI	GCWGC	2 cut(s)	525, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
Asp718I	GGTACC	1 cut(s)	837
AspLEI	GCGC	2 cut(s)	134, 394
AspS9I	GGNCC	5 cut(s)	361, 414, 450, 481, 712
AsuC2I	CCSGG	3 cut(s)	448, 530, 710
AsuHPI	GGTGA	5 cut(s)	49, 187, 571, 625, 715
AsuII	TTCGAA	1 cut(s)	423
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	4 cut(s)	361, 414, 450, 712
BanI	GGYRCC	1 cut(s)	837
BanII	GRGCYC	1 cut(s)	951
BauI	CACGAG	1 cut(s)	631
Bbv12I	GWGCWC	1 cut(s)	756
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	512, 651
BccI	CCATC	4 cut(s)	143, 290, 671, 694
BceAI	ACGGC	2 cut(s)	385, 590
BciT130I	CCWGG	3 cut(s)	389, 485, 514
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	3 cut(s)	448, 530, 710
BcoDI	GTCTC	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	395
BglI	GCCNNNNNGGC	1 cut(s)	602
BisI	GCNGC	7 cut(s)	63, 379, 475, 526, 665, 860, 894
BlsI	GCNGC	7 cut(s)	64, 380, 476, 527, 666, 861, 895
Bme1390I	CCNGG	6 cut(s)	389, 448, 485, 514, 530, 710
Bme18I	GGWCC	4 cut(s)	361, 414, 450, 712
BmeRI	GACNNNNNGTC	1 cut(s)	745
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	5 cut(s)	361, 414, 450, 481, 712
BmiI	GGNNCC	2 cut(s)	713, 839
BmrFI	CCNGG	6 cut(s)	389, 448, 485, 514, 530, 710
BmsI	GCATC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	689
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	658
BpuMI	CCSGG	3 cut(s)	448, 530, 710
BsaHI	GRCGYC	4 cut(s)	213, 288, 294, 567
BsaJI	CCNNGG	3 cut(s)	262, 446, 483
BsaWI	WCCGGW	2 cut(s)	714, 799
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 489, 490, 834
Bse118I	RCCGGY	2 cut(s)	569, 592
Bse1I	ACTGG	1 cut(s)	882
BseAI	TCCGGA	2 cut(s)	714, 799
BseBI	CCWGG	3 cut(s)	389, 485, 514
BseDI	CCNNGG	3 cut(s)	262, 446, 483
BseGI	GGATG	3 cut(s)	135, 537, 798
BseLI	CCNNNNNNNGG	4 cut(s)	388, 489, 490, 834
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	882
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	512, 651
BsgI	GTGCAG	1 cut(s)	782
Bsh1236I	CGCG	3 cut(s)	132, 183, 339
BshFI	GGCC	7 cut(s)	246, 300, 327, 482, 596, 605, 859
BshNI	GGYRCC	1 cut(s)	837
BsiHKAI	GWGCWC	1 cut(s)	756
BsiHKCI	CYCGRG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	4 cut(s)	388, 489, 490, 834
BsmAI	GTCTC	1 cut(s)	636
BsmBI	CGTCTC	1 cut(s)	636
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	7 cut(s)	246, 300, 327, 482, 596, 605, 859
BsoBI	CYCGRG	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	756, 951
Bsp13I	TCCGGA	2 cut(s)	714, 799
Bsp143I	GATC	1 cut(s)	726
BspANI	GGCC	7 cut(s)	246, 300, 327, 482, 596, 605, 859
BspCNI	CTCAG	1 cut(s)	45
BspEI	TCCGGA	2 cut(s)	714, 799
BspFNI	CGCG	3 cut(s)	132, 183, 339
BspLI	GGNNCC	2 cut(s)	713, 839
BspQI	GCTCTTC	1 cut(s)	939
BspT104I	TTCGAA	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	837
BsrFI	RCCGGY	2 cut(s)	569, 592
BsrI	ACTGG	1 cut(s)	882
BssAI	RCCGGY	2 cut(s)	569, 592
BssECI	CCNNGG	3 cut(s)	262, 446, 483
BssMI	GATC	1 cut(s)	726
BssNI	GRCGYC	4 cut(s)	213, 288, 294, 567
BssSI	CACGAG	1 cut(s)	631
Bst2BI	CACGAG	1 cut(s)	631
Bst2UI	CCWGG	3 cut(s)	389, 485, 514
Bst4CI	ACNGT	2 cut(s)	127, 352
Bst6I	CTCTTC	3 cut(s)	15, 52, 939
BstACI	GRCGYC	4 cut(s)	213, 288, 294, 567
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	6 cut(s)	24, 259, 571, 594, 891, 927
BstDEI	CTNAG	1 cut(s)	32
BstEII	GGTNACC	1 cut(s)	613
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstF5I	GGATG	3 cut(s)	135, 537, 798
BstFNI	CGCG	3 cut(s)	132, 183, 339
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	2 cut(s)	134, 394
BstKTI	GATC	1 cut(s)	729
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	1 cut(s)	726
BstMWI	GCNNNNNNNGC	8 cut(s)	287, 378, 509, 602, 760, 878, 910, 955
BstNI	CCWGG	3 cut(s)	389, 485, 514
BstPI	GGTNACC	1 cut(s)	613
BstSCI	CCNGG	6 cut(s)	387, 446, 483, 512, 528, 708
BstUI	CGCG	3 cut(s)	132, 183, 339
BstV1I	GCAGC	2 cut(s)	512, 651
BsuRI	GGCC	7 cut(s)	246, 300, 327, 482, 596, 605, 859
BtsCI	GGATG	3 cut(s)	135, 537, 798
Cac8I	GCNNGC	6 cut(s)	24, 259, 571, 594, 891, 927
CfoI	GCGC	2 cut(s)	134, 394
Cfr10I	RCCGGY	2 cut(s)	569, 592
Cfr13I	GGNCC	5 cut(s)	361, 414, 450, 481, 712
CseI	GACGC	7 cut(s)	172, 202, 296, 328, 509, 575, 653
Csp6I	GTAC	1 cut(s)	838
CspCI	CAANNNNNGTGG	2 cut(s)	940, 975
CviAII	CATG	2 cut(s)	742, 934
CviQI	GTAC	1 cut(s)	838
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	1 cut(s)	728
DpnII	GATC	1 cut(s)	726
DraI	TTTAAA	1 cut(s)	85
DrdI	GACNNNNNNGTC	2 cut(s)	293, 812
DriI	GACNNNNNGTC	1 cut(s)	745
DseDI	GACNNNNNNGTC	2 cut(s)	293, 812
EaeI	YGGCCR	1 cut(s)	594
Eam1104I	CTCTTC	3 cut(s)	15, 52, 939
Eam1105I	GACNNNNNGTC	1 cut(s)	745
EarI	CTCTTC	3 cut(s)	15, 52, 939
Eco24I	GRGCYC	1 cut(s)	951
Eco47I	GGWCC	4 cut(s)	361, 414, 450, 712
Eco88I	CYCGRG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	613
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoO109I	RGGNCCY	2 cut(s)	361, 481
EcoO65I	GGTNACC	1 cut(s)	613
EcoRII	CCWGG	3 cut(s)	387, 483, 512
EcoT38I	GRGCYC	1 cut(s)	951
Esp3I	CGTCTC	1 cut(s)	636
FaeI	CATG	2 cut(s)	745, 937
FaiI	YATR	5 cut(s)	692, 725, 743, 923, 935
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	2 cut(s)	741, 933
FauI	CCCGC	4 cut(s)	31, 188, 266, 562
FbaI	TGATCA	1 cut(s)	726
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	7 cut(s)	63, 379, 475, 526, 665, 860, 894
FokI	GGATG	3 cut(s)	122, 524, 805
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	7 cut(s)	63, 379, 475, 526, 665, 860, 894
GlaI	GCGC	2 cut(s)	133, 393
GluI	GCNGC	7 cut(s)	63, 379, 475, 526, 665, 860, 894
GsuI	CTGGAG	1 cut(s)	689
HaeII	RGCGCY	1 cut(s)	395
HaeIII	GGCC	7 cut(s)	246, 300, 327, 482, 596, 605, 859
HgaI	GACGC	7 cut(s)	172, 202, 296, 328, 509, 575, 653
HhaI	GCGC	2 cut(s)	134, 394
Hin1I	GRCGYC	4 cut(s)	213, 288, 294, 567
Hin1II	CATG	2 cut(s)	745, 937
Hin6I	GCGC	2 cut(s)	132, 392
HinP1I	GCGC	2 cut(s)	132, 392
HincII	GTYRAC	2 cut(s)	343, 499
HindII	GTYRAC	2 cut(s)	343, 499
HinfI	GANTC	3 cut(s)	561, 654, 796
HphI	GGTGA	5 cut(s)	49, 187, 571, 625, 715
Hpy166II	GTNNAC	3 cut(s)	343, 499, 706
Hpy188I	TCNGA	2 cut(s)	821, 980
Hpy188III	TCNNGA	5 cut(s)	201, 331, 631, 715, 800
Hpy8I	GTNNAC	3 cut(s)	343, 499, 706
HpyAV	CCTTC	2 cut(s)	120, 130
HpyCH4III	ACNGT	2 cut(s)	127, 352
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	3 cut(s)	435, 763, 925
HpyF10VI	GCNNNNNNNGC	8 cut(s)	287, 378, 509, 602, 760, 878, 910, 955
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	4 cut(s)	213, 288, 294, 567
Hsp92II	CATG	2 cut(s)	745, 937
HspAI	GCGC	2 cut(s)	132, 392
Kpn2I	TCCGGA	2 cut(s)	714, 799
KpnI	GGTACC	1 cut(s)	841
KroI	GCCGGC	2 cut(s)	569, 592
KroNI	GCCGGC	2 cut(s)	571, 594
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	1 cut(s)	726
LguI	GCTCTTC	1 cut(s)	939
Lsp1109I	GCAGC	2 cut(s)	512, 651
LweI	GCATC	1 cut(s)	444
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	1 cut(s)	728
MboI	GATC	1 cut(s)	726
MboII	GAAGA	3 cut(s)	39, 956, 958
MfeI	CAATTG	1 cut(s)	161
MhlI	GDGCHC	2 cut(s)	756, 951
MluCI	AATT	3 cut(s)	161, 425, 455
MlyI	GAGTC	1 cut(s)	663
MmeI	TCCRAC	1 cut(s)	441
MroI	TCCGGA	2 cut(s)	714, 799
MroNI	GCCGGC	2 cut(s)	569, 592
MseI	TTAA	1 cut(s)	84
MspR9I	CCNGG	6 cut(s)	389, 448, 485, 514, 530, 710
MunI	CAATTG	1 cut(s)	161
MvaI	CCWGG	3 cut(s)	389, 485, 514
MvnI	CGCG	3 cut(s)	132, 183, 339
MwoI	GCNNNNNNNGC	8 cut(s)	287, 378, 509, 602, 760, 878, 910, 955
NaeI	GCCGGC	2 cut(s)	571, 594
NciI	CCSGG	3 cut(s)	448, 530, 710
NdeII	GATC	1 cut(s)	726
NgoMIV	GCCGGC	2 cut(s)	569, 592
NlaIII	CATG	2 cut(s)	745, 937
NlaIV	GGNNCC	2 cut(s)	713, 839
NmeAIII	GCCGAG	2 cut(s)	243, 303
NmuCI	GTSAC	1 cut(s)	613
NspV	TTCGAA	1 cut(s)	423
PaeR7I	CTCGAG	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	3 cut(s)	282, 291, 336
PdiI	GCCGGC	2 cut(s)	571, 594
PfeI	GAWTC	2 cut(s)	561, 796
PflFI	GACNNNGTC	1 cut(s)	653
PkrI	GCNGC	7 cut(s)	64, 380, 476, 527, 666, 861, 895
PleI	GAGTC	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	662
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	3 cut(s)	387, 483, 512
PspEI	GGTNACC	1 cut(s)	613
PspGI	CCWGG	3 cut(s)	387, 483, 512
PspN4I	GGNNCC	2 cut(s)	713, 839
PspPI	GGNCC	5 cut(s)	361, 414, 450, 481, 712
PspPPI	RGGWCCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	653
RsaI	GTAC	1 cut(s)	839
RsaNI	GTAC	1 cut(s)	838
SalI	GTCGAC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	939
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	7 cut(s)	63, 379, 475, 526, 665, 860, 894
Sau3AI	GATC	1 cut(s)	726
Sau96I	GGNCC	5 cut(s)	361, 414, 450, 481, 712
SchI	GAGTC	1 cut(s)	663
ScrFI	CCNGG	6 cut(s)	389, 448, 485, 514, 530, 710
SduI	GDGCHC	2 cut(s)	756, 951
SfaNI	GCATC	1 cut(s)	444
SfiI	GGCCNNNNNGGCC	1 cut(s)	602
Sfr274I	CTCGAG	1 cut(s)	329
SfuI	TTCGAA	1 cut(s)	423
SgrDI	CGTCGACG	1 cut(s)	497
SinI	GGWCC	4 cut(s)	361, 414, 450, 712
SlaI	CTCGAG	1 cut(s)	329
SmlI	CTYRAG	2 cut(s)	329, 637
SmoI	CTYRAG	2 cut(s)	329, 637
Sse9I	AATT	3 cut(s)	161, 425, 455
StyD4I	CCNGG	6 cut(s)	387, 446, 483, 512, 528, 708
TaaI	ACNGT	2 cut(s)	127, 352
TaiI	ACGT	1 cut(s)	297
TasI	AATT	3 cut(s)	161, 425, 455
TauI	GCSGC	5 cut(s)	65, 381, 477, 862, 896
TfiI	GAWTC	2 cut(s)	561, 796
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	2 cut(s)	525, 664
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	2 cut(s)	526, 565
TspGWI	ACGGA	2 cut(s)	739, 824
Tth111I	GACNNNGTC	1 cut(s)	653
VpaK11BI	GGWCC	4 cut(s)	361, 414, 450, 712
XagI	CCTNNNNNAGG	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	498
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.