Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0017186

Physical Location & Seq

Genomic Coordinates Forward (+)

51391455 .. 51392839

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0407500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCCTTGCATGGCTGGGAAGGATGTGGCAGGTGTCCATACTCCAAGCTTTGTTTCACCTAAAGACATTATCAGGGATTACATCTCCAAGCATCCAGAGGAAGTAGCTGAAACATGTGATATAGAAATACCAGCATGGACAACTAGTGTTGTGGGATGGGGAGAGAACGATGAGAGCGAGGTAGTTGAGATTCCAAGAGGCCAGCCTACCCCATGCCTGCCACTCCCAAAGGACCTTAAACATGTAACTGTAGCTACAGCTTCGACGCTACTGGATATGATTGGTGGCTTGAACGCCCTTCTATTGCATAAGTGCATGGTGGGAAAAGATGAGATCAAAAGGCTTAGGAAGGAGAATGAAGAGCTCCGTGCAAGTGTAAAGCTGCTTTCGGGAAGGCCAGATGATGATGAAGGTGATTTCGTATGTCATGTTCGTGAGCCACAACCTGAGGAGGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030899 GO:0031967 GO:0031975 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiA

Protein Analysis

153

Amino Acids

16.9

Weight (kDa)

4.77

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0017186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24020
fragaria_vesca	FvH4_7g30210
malus_domestica	MD07G1278700.v1.1
prunus_persica	Prupe.2G300600_v2.0.a1
pyrus_communis	pycom07g25360
rosa_chinensis	RchiOBHm_Chr1g0378251
rosa_laevigata	RLG00000026456
rosa_multiflora	Rmu_sc0006315.1_g000003 Rmu_sc0038642.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280610
rosa_rugosa	Rorug01G0407500
rosa_samantha	Rh1AG422300
rosa_wichuraiana	Rw1G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	20
AflIII	ACRYGT	2 cut(s)	113, 241
AgsI	TTSAA	1 cut(s)	292
AhlI	ACTAGT	1 cut(s)	143
AjuI	GAANNNNNNNTTGG	2 cut(s)	37, 69
AluBI	AGCT	6 cut(s)	48, 107, 254, 260, 364, 382
AluI	AGCT	6 cut(s)	48, 107, 254, 260, 364, 382
Alw21I	GWGCWC	1 cut(s)	366
AoxI	GGCC	2 cut(s)	199, 395
ApeKI	GCWGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	48, 425
AvaII	GGWCC	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	1 cut(s)	150
BcuI	ACTAGT	1 cut(s)	143
BfaI	CTAG	2 cut(s)	144, 460
BfmI	CTRYAG	2 cut(s)	249, 255
BfuAI	ACCTGC	1 cut(s)	20
BisI	GCNGC	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmsI	GCATC	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	276
Bse21I	CCTNAGG	1 cut(s)	447
BseGI	GGATG	3 cut(s)	28, 91, 161
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	369
BseYI	CCCAGC	1 cut(s)	14
BshFI	GGCC	2 cut(s)	201, 397
BsiHKAI	GWGCWC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	201, 397
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	333
BspANI	GGCC	2 cut(s)	201, 397
BspCNI	CTCAG	1 cut(s)	439
BspMI	ACCTGC	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	203, 218
BstDEI	CTNAG	2 cut(s)	344, 447
BstF5I	GGATG	3 cut(s)	28, 91, 161
BstKTI	GATC	1 cut(s)	336
BstMBI	GATC	1 cut(s)	333
BstNSI	RCATGY	2 cut(s)	117, 245
BstSFI	CTRYAG	2 cut(s)	249, 255
BstV1I	GCAGC	1 cut(s)	369
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	201, 397
BtsCI	GGATG	3 cut(s)	28, 91, 161
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	203, 218
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	274
CviAII	CATG	7 cut(s)	10, 114, 135, 213, 242, 316, 428
DdeI	CTNAG	2 cut(s)	344, 447
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	364
Eco81I	CCTNAGG	1 cut(s)	447
EcoICRI	GAGCTC	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	366
FaeI	CATG	7 cut(s)	13, 117, 138, 216, 245, 319, 431
FatI	CATG	7 cut(s)	9, 113, 134, 212, 241, 315, 427
Fnu4HI	GCNGC	1 cut(s)	383
FokI	GGATG	3 cut(s)	35, 78, 168
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	383
FspBI	CTAG	2 cut(s)	144, 460
GluI	GCNGC	1 cut(s)	383
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	201, 397
HgaI	GACGC	1 cut(s)	274
Hin1II	CATG	7 cut(s)	13, 117, 138, 216, 245, 319, 431
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	1 cut(s)	190
HphI	GGTGA	2 cut(s)	48, 425
Hpy188III	TCNNGA	3 cut(s)	95, 390, 434
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	5 cut(s)	13, 308, 343, 387, 404
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	4 cut(s)	9, 307, 315, 371
HpyF3I	CTNAG	2 cut(s)	344, 447
Hsp92II	CATG	7 cut(s)	13, 117, 138, 216, 245, 319, 431
Kzo9I	GATC	1 cut(s)	333
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	369
LpnPI	CCDG	8 cut(s)	15, 58, 108, 144, 215, 230, 257, 411
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	144, 460
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	366
MnlI	CCTC	5 cut(s)	91, 172, 191, 442, 445
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	432
NdeII	GATC	1 cut(s)	333
NlaIII	CATG	7 cut(s)	13, 117, 138, 216, 245, 319, 431
NspI	RCATGY	2 cut(s)	117, 245
PaqCI	CACCTGC	1 cut(s)	20
PciI	ACATGT	2 cut(s)	113, 241
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	384
PpuMI	RGGWCCY	1 cut(s)	232
PscI	ACATGT	2 cut(s)	113, 241
Psp124BI	GAGCTC	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	232
PspPPI	RGGWCCY	1 cut(s)	232
PsrI	GAACNNNNNNTAC	2 cut(s)	414, 446
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	383
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	2 cut(s)	249, 255
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	432
SpeI	ACTAGT	1 cut(s)	143
SspMI	CTAG	2 cut(s)	144, 460
SstI	GAGCTC	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseI	GCWGC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	372, 423
TspGWI	ACGGA	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	232
XceI	RCATGY	2 cut(s)	117, 245
XspI	CTAG	2 cut(s)	144, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.