Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038642.1

Orthogroup ID

OG0017186

Physical Location & Seq

Genomic Coordinates Reverse (-)

787 .. 1776

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038642.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgctcgccgttcaactcctccccaccctaaatcccaaaccctccatcaccaccaccccaaaccgccgcaccgcccttaaacccttccacaaccccaaaaccctaaaacccaactcctccccattcaccgtccgctccgtcctccaatacaacaggaagccccaattgtccggcgacactccccgcgtcgtcgtcatcacctccggaaagggcggcgtcggcaagaccaccaccaccgccaatgtcggcctctccctcgcccgcctcggcttctccgtcgtcgccatcgacgccgacgtcggcctccgcaacctcgacctcctcctcggcctcgagaaccgcgtcaactacaccgtcgtcgaggtcctcaacggcgactgccgcctcgaccaggctctcgtcagggacaagcgctggtccaacttcgaattgctgtgcatttccaagcccagatccaaattgcccatgggcttcggcggcaaagccctcgtctgggtcgtcgacgccctaaaggcccggcaggagggctgcccggacttcatcctcatcgactgcccggccggcattgatgctggattcattaccgccatcactccggccaatgaggctgtgctggtgaccacgccggacattaccagcttgcgagacgccgacagagtcattgggctgctggagtgtgatggaatcagagatattaagatgatggtgaaccgggttcggactgatatgatcaaaggtgaggacatgatgtctgtgctggatgtgcaggagatgctgggtttgtcattattggggatgattccggaggacacggaggtgattcgaagcaccaacagagggtaccctctggttttgaataggccacccacattggctggactggctttcgagcaggctgcatggagacttgttgagcaggacactatgaaggctgtcatggttgaggaagagcccaagaagcgcggcttcttctcatttttcggagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030899 GO:0031967 GO:0031975 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiA

Protein Analysis

329

Amino Acids

36.03

Weight (kDa)

8.78

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24020
fragaria_vesca	FvH4_7g30210
malus_domestica	MD07G1278700.v1.1
prunus_persica	Prupe.2G300600_v2.0.a1
pyrus_communis	pycom07g25360
rosa_chinensis	RchiOBHm_Chr1g0378251
rosa_laevigata	RLG00000026456
rosa_multiflora	Rmu_sc0006315.1_g000003 Rmu_sc0038642.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280610
rosa_rugosa	Rorug01G0407500
rosa_samantha	Rh1AG422300
rosa_wichuraiana	Rw1G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AatII	GACGTC	1 cut(s)	300
Acc65I	GGTACC	1 cut(s)	840
AccB1I	GGYRCC	1 cut(s)	840
AccBSI	CCGCTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	501
AccII	CGCG	3 cut(s)	186, 342, 963
AccIII	TCCGGA	2 cut(s)	203, 802
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	2 cut(s)	558, 597
AcyI	GRCGYC	5 cut(s)	216, 291, 297, 504, 648
AfaI	GTAC	1 cut(s)	842
AfeI	AGCGCT	1 cut(s)	413
AfiI	CCNNNNNNNGG	5 cut(s)	391, 492, 493, 523, 837
AgsI	TTSAA	2 cut(s)	14, 856
AhdI	GACNNNNNGTC	1 cut(s)	748
AjnI	CCWGG	1 cut(s)	390
AleI	CACNNNNGTG	1 cut(s)	815
AluBI	AGCT	1 cut(s)	639
AluI	AGCT	1 cut(s)	639
Alw26I	GTCTC	2 cut(s)	639, 898
AlwI	GGATC	1 cut(s)	447
Ama87I	CYCGRG	1 cut(s)	332
Aor13HI	TCCGGA	2 cut(s)	203, 802
Aor51HI	AGCGCT	1 cut(s)	413
AoxI	GGCC	7 cut(s)	247, 301, 328, 513, 558, 597, 860
ApeKI	GCWGC	3 cut(s)	528, 667, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	474, 506
Asp718I	GGTACC	1 cut(s)	840
AspLEI	GCGC	2 cut(s)	414, 963
AspS9I	GGNCC	3 cut(s)	364, 417, 514
AsuC2I	CCSGG	4 cut(s)	517, 533, 557, 713
AsuHPI	GGTGA	7 cut(s)	40, 118, 190, 628, 718, 749, 829
AsuII	TTCGAA	2 cut(s)	426, 823
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	364, 417
BanI	GGYRCC	1 cut(s)	840
BanII	GRGCYC	1 cut(s)	954
BbvI	GCAGC	3 cut(s)	515, 654, 883
BccI	CCATC	5 cut(s)	53, 293, 596, 674, 697
BceAI	ACGGC	1 cut(s)	388
BcgI	CGANNNNNNTGC	4 cut(s)	469, 503, 878, 912
BciT130I	CCWGG	1 cut(s)	392
BclI	TGATCA	1 cut(s)	729
BcnI	CCSGG	4 cut(s)	517, 533, 557, 713
BcoDI	GTCTC	2 cut(s)	639, 898
BfoI	RGCGCY	1 cut(s)	415
BglI	GCCNNNNNGGC	3 cut(s)	512, 561, 605
BisI	GCNGC	8 cut(s)	67, 214, 382, 478, 529, 668, 897, 964
BlsI	GCNGC	8 cut(s)	68, 215, 383, 479, 530, 669, 898, 965
Bme1390I	CCNGG	5 cut(s)	392, 517, 533, 557, 713
Bme18I	GGWCC	2 cut(s)	364, 417
BmeRI	GACNNNNNGTC	1 cut(s)	748
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	3 cut(s)	364, 417, 514
BmiI	GGNNCC	1 cut(s)	842
BmrFI	CCNGG	5 cut(s)	392, 517, 533, 557, 713
BmsI	GCATC	2 cut(s)	559, 762
BpmI	CTGGAG	1 cut(s)	692
Bpu14I	TTCGAA	2 cut(s)	426, 823
BpuMI	CCSGG	4 cut(s)	517, 533, 557, 713
BsaHI	GRCGYC	5 cut(s)	216, 291, 297, 504, 648
BsaJI	CCNNGG	3 cut(s)	265, 325, 465
BsaWI	WCCGGW	2 cut(s)	203, 802
Bsc4I	CCNNNNNNNGG	5 cut(s)	391, 492, 493, 523, 837
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	1 cut(s)	885
BseAI	TCCGGA	2 cut(s)	203, 802
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	3 cut(s)	265, 325, 465
BseGI	GGATG	3 cut(s)	540, 766, 801
BseLI	CCNNNNNNNGG	5 cut(s)	391, 492, 493, 523, 837
BseNI	ACTGG	1 cut(s)	885
BseRI	GAGGAG	4 cut(s)	8, 106, 311, 314
BseX3I	CGGCCG	1 cut(s)	558
BseXI	GCAGC	3 cut(s)	515, 654, 883
BseYI	CCCAGC	1 cut(s)	775
BsgI	GTGCAG	1 cut(s)	785
Bsh1236I	CGCG	3 cut(s)	186, 342, 963
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	7 cut(s)	249, 303, 330, 515, 560, 599, 862
BshNI	GGYRCC	1 cut(s)	840
BsiEI	CGRYCG	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	5 cut(s)	391, 492, 493, 523, 837
BsmAI	GTCTC	2 cut(s)	639, 898
BsmBI	CGTCTC	1 cut(s)	639
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	7 cut(s)	249, 303, 330, 515, 560, 599, 862
BsoBI	CYCGRG	1 cut(s)	332
Bsp119I	TTCGAA	2 cut(s)	426, 823
Bsp1286I	GDGCHC	1 cut(s)	954
Bsp13I	TCCGGA	2 cut(s)	203, 802
Bsp143I	GATC	2 cut(s)	452, 729
Bsp19I	CCATGG	1 cut(s)	465
BspANI	GGCC	7 cut(s)	249, 303, 330, 515, 560, 599, 862
BspEI	TCCGGA	2 cut(s)	203, 802
BspFNI	CGCG	3 cut(s)	186, 342, 963
BspLI	GGNNCC	1 cut(s)	842
BspPI	GGATC	1 cut(s)	447
BspQI	GCTCTTC	1 cut(s)	942
BspT104I	TTCGAA	2 cut(s)	426, 823
BspT107I	GGYRCC	1 cut(s)	840
BsrBI	CCGCTC	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	885
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	3 cut(s)	265, 325, 465
BssMI	GATC	2 cut(s)	452, 729
BssNI	GRCGYC	5 cut(s)	216, 291, 297, 504, 648
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	130, 355
Bst6I	CTCTTC	1 cut(s)	942
BstACI	GRCGYC	5 cut(s)	216, 291, 297, 504, 648
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstBI	TTCGAA	2 cut(s)	426, 823
BstC8I	GCNNGC	5 cut(s)	6, 262, 562, 641, 894
BstDSI	CCRYGG	1 cut(s)	465
BstEII	GGTNACC	1 cut(s)	616
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	540, 766, 801
BstFNI	CGCG	3 cut(s)	186, 342, 963
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	414, 963
BstKTI	GATC	2 cut(s)	455, 732
BstMAI	GTCTC	2 cut(s)	639, 898
BstMBI	GATC	2 cut(s)	452, 729
BstMCI	CGRYCG	1 cut(s)	561
BstNI	CCWGG	1 cut(s)	392
BstPI	GGTNACC	1 cut(s)	616
BstSCI	CCNGG	5 cut(s)	390, 515, 531, 555, 711
BstUI	CGCG	3 cut(s)	186, 342, 963
BstV1I	GCAGC	3 cut(s)	515, 654, 883
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BstZI	CGGCCG	1 cut(s)	558
BsuRI	GGCC	7 cut(s)	249, 303, 330, 515, 560, 599, 862
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	3 cut(s)	540, 766, 801
Cac8I	GCNNGC	5 cut(s)	6, 262, 562, 641, 894
CfoI	GCGC	2 cut(s)	414, 963
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	3 cut(s)	364, 417, 514
CseI	GACGC	6 cut(s)	175, 205, 299, 331, 512, 656
Csp6I	GTAC	1 cut(s)	841
CspCI	CAANNNNNGTGG	2 cut(s)	852, 887
CviAII	CATG	4 cut(s)	466, 745, 900, 937
CviQI	GTAC	1 cut(s)	841
DpnI	GATC	2 cut(s)	454, 731
DpnII	GATC	2 cut(s)	452, 729
DrdI	GACNNNNNNGTC	1 cut(s)	296
DriI	GACNNNNNGTC	1 cut(s)	748
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	2 cut(s)	558, 597
EagI	CGGCCG	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	942
Eam1105I	GACNNNNNGTC	1 cut(s)	748
EarI	CTCTTC	1 cut(s)	942
EclXI	CGGCCG	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	954
Eco47I	GGWCC	2 cut(s)	364, 417
Eco47III	AGCGCT	1 cut(s)	413
Eco52I	CGGCCG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	616
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	364
EcoO65I	GGTNACC	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	954
ErhI	CCWWGG	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	639
FaeI	CATG	4 cut(s)	469, 748, 903, 940
FaiI	YATR	6 cut(s)	467, 728, 746, 901, 926, 938
FalI	AAGNNNNNCTT	2 cut(s)	950, 982
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	4 cut(s)	465, 744, 899, 936
FauI	CCCGC	2 cut(s)	191, 269
FbaI	TGATCA	1 cut(s)	729
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	8 cut(s)	67, 214, 382, 478, 529, 668, 897, 964
FokI	GGATG	3 cut(s)	527, 773, 808
FriOI	GRGCYC	1 cut(s)	954
Fsp4HI	GCNGC	8 cut(s)	67, 214, 382, 478, 529, 668, 897, 964
GlaI	GCGC	2 cut(s)	413, 962
GluI	GCNGC	8 cut(s)	67, 214, 382, 478, 529, 668, 897, 964
GsaI	CCCAGC	1 cut(s)	779
GsuI	CTGGAG	1 cut(s)	692
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	7 cut(s)	249, 303, 330, 515, 560, 599, 862
HgaI	GACGC	6 cut(s)	175, 205, 299, 331, 512, 656
HhaI	GCGC	2 cut(s)	414, 963
Hin1I	GRCGYC	5 cut(s)	216, 291, 297, 504, 648
Hin1II	CATG	4 cut(s)	469, 748, 903, 940
Hin6I	GCGC	2 cut(s)	412, 961
HinP1I	GCGC	2 cut(s)	412, 961
HincII	GTYRAC	2 cut(s)	346, 502
HindII	GTYRAC	2 cut(s)	346, 502
HinfI	GANTC	5 cut(s)	576, 657, 684, 799, 820
HphI	GGTGA	7 cut(s)	40, 118, 190, 628, 718, 749, 829
Hpy166II	GTNNAC	3 cut(s)	346, 502, 709
Hpy188I	TCNGA	3 cut(s)	689, 720, 983
Hpy188III	TCNNGA	3 cut(s)	204, 334, 803
Hpy8I	GTNNAC	3 cut(s)	346, 502, 709
HpyAV	CCTTC	2 cut(s)	94, 922
HpyCH4III	ACNGT	2 cut(s)	130, 355
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	438, 766, 899
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	5 cut(s)	216, 291, 297, 504, 648
Hsp92II	CATG	4 cut(s)	469, 748, 903, 940
HspAI	GCGC	2 cut(s)	412, 961
Kpn2I	TCCGGA	2 cut(s)	203, 802
KpnI	GGTACC	1 cut(s)	844
KroI	GCCGGC	1 cut(s)	560
KroNI	GCCGGC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	729
Kzo9I	GATC	2 cut(s)	452, 729
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	3 cut(s)	515, 654, 883
LweI	GCATC	2 cut(s)	559, 762
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	2 cut(s)	454, 731
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	2 cut(s)	452, 729
MboII	GAAGA	2 cut(s)	959, 961
MfeI	CAATTG	1 cut(s)	164
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	954
MluCI	AATT	3 cut(s)	164, 428, 458
MlyI	GAGTC	1 cut(s)	666
MmeI	TCCRAC	1 cut(s)	444
MroI	TCCGGA	2 cut(s)	203, 802
MroNI	GCCGGC	1 cut(s)	560
MseI	TTAA	2 cut(s)	78, 696
MslI	CAYNNNNRTG	1 cut(s)	815
MspR9I	CCNGG	5 cut(s)	392, 517, 533, 557, 713
MunI	CAATTG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	3 cut(s)	186, 342, 963
NaeI	GCCGGC	1 cut(s)	562
NciI	CCSGG	4 cut(s)	517, 533, 557, 713
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	2 cut(s)	452, 729
NgoMIV	GCCGGC	1 cut(s)	560
NlaIII	CATG	4 cut(s)	469, 748, 903, 940
NlaIV	GGNNCC	1 cut(s)	842
NmeAIII	GCCGAG	2 cut(s)	246, 306
NmuCI	GTSAC	1 cut(s)	616
NspV	TTCGAA	2 cut(s)	426, 823
OliI	CACNNNNGTG	1 cut(s)	815
PaeR7I	CTCGAG	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	942
PcsI	WCGNNNNNNNCGW	5 cut(s)	273, 285, 294, 339, 495
PdiI	GCCGGC	1 cut(s)	562
PfeI	GAWTC	4 cut(s)	576, 684, 799, 820
PflFI	GACNNNGTC	1 cut(s)	656
PkrI	GCNGC	8 cut(s)	68, 215, 383, 479, 530, 669, 898, 965
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
PpuMI	RGGWCCY	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	390
PspEI	GGTNACC	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	842
PspPI	GGNCC	3 cut(s)	364, 417, 514
PspPPI	RGGWCCY	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	452
PsyI	GACNNNGTC	1 cut(s)	656
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
RseI	CAYNNNNRTG	1 cut(s)	815
SalI	GTCGAC	1 cut(s)	500
SapI	GCTCTTC	1 cut(s)	942
SaqAI	TTAA	2 cut(s)	78, 696
SatI	GCNGC	8 cut(s)	67, 214, 382, 478, 529, 668, 897, 964
Sau3AI	GATC	2 cut(s)	452, 729
Sau96I	GGNCC	3 cut(s)	364, 417, 514
SchI	GAGTC	1 cut(s)	666
ScrFI	CCNGG	5 cut(s)	392, 517, 533, 557, 713
SduI	GDGCHC	1 cut(s)	954
SetI	ASST	8 cut(s)	203, 300, 315, 321, 366, 641, 739, 819
SfaNI	GCATC	2 cut(s)	559, 762
Sfr274I	CTCGAG	1 cut(s)	332
SfuI	TTCGAA	2 cut(s)	426, 823
SgrDI	CGTCGACG	1 cut(s)	500
SinI	GGWCC	2 cut(s)	364, 417
SlaI	CTCGAG	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	815
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	164, 428, 458
StyD4I	CCNGG	5 cut(s)	390, 515, 531, 555, 711
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	130, 355
TaiI	ACGT	1 cut(s)	300
TasI	AATT	3 cut(s)	164, 428, 458
TauI	GCSGC	5 cut(s)	69, 216, 384, 480, 966
TfiI	GAWTC	4 cut(s)	576, 684, 799, 820
Tru1I	TTAA	2 cut(s)	78, 696
Tru9I	TTAA	2 cut(s)	78, 696
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	3 cut(s)	528, 667, 896
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	3 cut(s)	529, 568, 941
TspGWI	ACGGA	3 cut(s)	127, 265, 827
Tth111I	GACNNNGTC	1 cut(s)	656
VpaK11BI	GGWCC	2 cut(s)	364, 417
XagI	CCTNNNNNAGG	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XhoI	CTCGAG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	501
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.