Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0017186

Physical Location & Seq

Genomic Coordinates Reverse (-)

3128242 .. 3129773

Gene Structure 1532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACATTATGTCCATCGAAGCCCCAATTGTCCGGCGACACTCCCCGCGTCGTCGTCATCACCTCCGGCAAGGGCGGCGTCGGCAAGACCACCACCACCGCCAATGTCGGCCTCTCCCTCGCCCGCCTCGGCTTCTCCGTCGTCGCCATCGACGCCGACGTCGGCCTCCGCAACCTCGACCTCCTCCTCGGCCTCGAGAACCGCGTCAACTACACCGTCGTCGAGGTCCTCAACGGCGACTGCCGCCTCGACCAGGCTCTCGTCAGGGACAAGCGCTGGTCCAACTTCGAATTGCTCTGCATTTCCAAGCCCAGATCCAAATTGCCCATGGGCTTCGGCGGCAAAGCCCTCGTCTGGGTCGTCGACGCCCTAAAGGCCCGGCAGGAGGGCTGCCCGGACTTCATCCTCATCGACTGCCCGGCCGGCATTGATGCTGGATTCATTACCGCCATCACTCCGGCCAATGAGGCTGTGCTGGTGACCACGCCGGACATTACCAGCTTGCGAGACGCCGACAGGGTCATTGGGCTGCTGGAGTGTGATGGAATCAGAGATATAAAGATGATGGTGAACCGGGTTCGGACTGATATGATCAAAGGAGAGGACATGATGTCTGTGCTGGATGTGCAGGAGATGCTGGGATTGTCATTATTGGGGATGATTCCGGAGGACACGGAGGCTGCATGGAGACTTGTTGAGCAGGACACTATGAAGGCTGTCATGGTTGAGGAAGAGCCCAAGAAGCGCGGCTTCTTCTCATTTTTCGGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030899 GO:0031967 GO:0031975 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiA

Protein Analysis

257

Amino Acids

27.93

Weight (kDa)

4.93

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	16 - 198	3.7e-14	NUBPL iron-transfer P-loop NTPase
AAA_31	PF13614	16 - 169	1.1e-14	AAA domain
MipZ	PF09140	16 - 170	1.3e-07	ATPase MipZ
CbiA	PF01656	18 - 227	1e-17	CobQ/CobB/MinD/ParA nucleotide binding domain
Fer4_NifH	PF00142	22 - 237	5.5e-07	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24020
fragaria_vesca	FvH4_7g30210
malus_domestica	MD07G1278700.v1.1
prunus_persica	Prupe.2G300600_v2.0.a1
pyrus_communis	pycom07g25360
rosa_chinensis	RchiOBHm_Chr1g0378251
rosa_laevigata	RLG00000026456
rosa_multiflora	Rmu_sc0006315.1_g000003 Rmu_sc0038642.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280610
rosa_rugosa	Rorug01G0407500
rosa_samantha	Rh1AG422300
rosa_wichuraiana	Rw1G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AatII	GACGTC	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	3 cut(s)	48, 204, 747
AccIII	TCCGGA	1 cut(s)	664
AclWI	GGATC	1 cut(s)	309
AcoI	YGGCCR	2 cut(s)	420, 459
AcyI	GRCGYC	5 cut(s)	78, 153, 159, 366, 510
AfeI	AGCGCT	1 cut(s)	275
AfiI	CCNNNNNNNGG	4 cut(s)	253, 354, 355, 385
AhdI	GACNNNNNGTC	2 cut(s)	9, 610
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	1 cut(s)	501
AluI	AGCT	1 cut(s)	501
Alw26I	GTCTC	2 cut(s)	501, 682
AlwI	GGATC	1 cut(s)	309
Ama87I	CYCGRG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	664
Aor51HI	AGCGCT	1 cut(s)	275
AoxI	GGCC	6 cut(s)	109, 163, 190, 375, 420, 459
ApeKI	GCWGC	3 cut(s)	390, 529, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AspLEI	GCGC	2 cut(s)	276, 747
AspS9I	GGNCC	3 cut(s)	226, 279, 376
AsuC2I	CCSGG	4 cut(s)	379, 395, 419, 575
AsuHPI	GGTGA	3 cut(s)	52, 490, 580
AsuII	TTCGAA	1 cut(s)	288
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	2 cut(s)	226, 279
BanII	GRGCYC	1 cut(s)	738
BbvI	GCAGC	3 cut(s)	377, 516, 667
BccI	CCATC	5 cut(s)	22, 155, 458, 536, 559
BceAI	ACGGC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	1 cut(s)	254
BclI	TGATCA	1 cut(s)	591
BcnI	CCSGG	4 cut(s)	379, 395, 419, 575
BcoDI	GTCTC	2 cut(s)	501, 682
BfoI	RGCGCY	1 cut(s)	277
BglI	GCCNNNNNGGC	3 cut(s)	374, 423, 467
BisI	GCNGC	7 cut(s)	76, 244, 340, 391, 530, 681, 748
BlsI	GCNGC	7 cut(s)	77, 245, 341, 392, 531, 682, 749
Bme1390I	CCNGG	5 cut(s)	254, 379, 395, 419, 575
Bme18I	GGWCC	2 cut(s)	226, 279
BmeRI	GACNNNNNGTC	2 cut(s)	9, 610
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	226, 279, 376
BmrFI	CCNGG	5 cut(s)	254, 379, 395, 419, 575
BmsI	GCATC	2 cut(s)	421, 624
BpmI	CTGGAG	1 cut(s)	554
Bpu14I	TTCGAA	1 cut(s)	288
BpuMI	CCSGG	4 cut(s)	379, 395, 419, 575
BsaHI	GRCGYC	5 cut(s)	78, 153, 159, 366, 510
BsaJI	CCNNGG	3 cut(s)	127, 187, 327
BsaWI	WCCGGW	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 354, 355, 385
Bse118I	RCCGGY	1 cut(s)	422
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	127, 187, 327
BseGI	GGATG	3 cut(s)	402, 628, 663
BseLI	CCNNNNNNNGG	4 cut(s)	253, 354, 355, 385
BseRI	GAGGAG	2 cut(s)	173, 176
BseX3I	CGGCCG	1 cut(s)	420
BseXI	GCAGC	3 cut(s)	377, 516, 667
BseYI	CCCAGC	1 cut(s)	637
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	3 cut(s)	48, 204, 747
Bsh1285I	CGRYCG	1 cut(s)	423
BshFI	GGCC	6 cut(s)	111, 165, 192, 377, 422, 461
BsiEI	CGRYCG	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	4 cut(s)	253, 354, 355, 385
BsmAI	GTCTC	2 cut(s)	501, 682
BsmBI	CGTCTC	1 cut(s)	501
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	6 cut(s)	111, 165, 192, 377, 422, 461
BsoBI	CYCGRG	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	2 cut(s)	314, 591
Bsp19I	CCATGG	1 cut(s)	327
BspANI	GGCC	6 cut(s)	111, 165, 192, 377, 422, 461
BspEI	TCCGGA	1 cut(s)	664
BspFNI	CGCG	3 cut(s)	48, 204, 747
BspPI	GGATC	1 cut(s)	309
BspQI	GCTCTTC	1 cut(s)	726
BspT104I	TTCGAA	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	3 cut(s)	127, 187, 327
BssMI	GATC	2 cut(s)	314, 591
BssNI	GRCGYC	5 cut(s)	78, 153, 159, 366, 510
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	726
BstACI	GRCGYC	5 cut(s)	78, 153, 159, 366, 510
BstAPI	GCANNNNNTGC	1 cut(s)	634
BstBI	TTCGAA	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	124, 424, 503
BstDSI	CCRYGG	1 cut(s)	327
BstEII	GGTNACC	1 cut(s)	478
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	3 cut(s)	402, 628, 663
BstFNI	CGCG	3 cut(s)	48, 204, 747
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	2 cut(s)	276, 747
BstKTI	GATC	2 cut(s)	317, 594
BstMAI	GTCTC	2 cut(s)	501, 682
BstMBI	GATC	2 cut(s)	314, 591
BstMCI	CGRYCG	1 cut(s)	423
BstNI	CCWGG	1 cut(s)	254
BstPI	GGTNACC	1 cut(s)	478
BstSCI	CCNGG	5 cut(s)	252, 377, 393, 417, 573
BstUI	CGCG	3 cut(s)	48, 204, 747
BstV1I	GCAGC	3 cut(s)	377, 516, 667
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BstZI	CGGCCG	1 cut(s)	420
BsuRI	GGCC	6 cut(s)	111, 165, 192, 377, 422, 461
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	3 cut(s)	402, 628, 663
Cac8I	GCNNGC	3 cut(s)	124, 424, 503
CfoI	GCGC	2 cut(s)	276, 747
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	226, 279, 376
CseI	GACGC	6 cut(s)	37, 67, 161, 193, 374, 518
CviAII	CATG	4 cut(s)	328, 607, 684, 721
DpnI	GATC	2 cut(s)	316, 593
DpnII	GATC	2 cut(s)	314, 591
DrdI	GACNNNNNNGTC	1 cut(s)	158
DriI	GACNNNNNGTC	2 cut(s)	9, 610
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	2 cut(s)	420, 459
EagI	CGGCCG	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	726
Eam1105I	GACNNNNNGTC	2 cut(s)	9, 610
EarI	CTCTTC	1 cut(s)	726
EclXI	CGGCCG	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	738
Eco47I	GGWCC	2 cut(s)	226, 279
Eco47III	AGCGCT	1 cut(s)	275
Eco52I	CGGCCG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	194
Eco91I	GGTNACC	1 cut(s)	478
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	4 cut(s)	331, 610, 687, 724
FaiI	YATR	8 cut(s)	10, 329, 557, 590, 608, 685, 710, 722
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	4 cut(s)	327, 606, 683, 720
FauI	CCCGC	2 cut(s)	53, 131
FbaI	TGATCA	1 cut(s)	591
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	7 cut(s)	76, 244, 340, 391, 530, 681, 748
FokI	GGATG	3 cut(s)	389, 635, 670
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	7 cut(s)	76, 244, 340, 391, 530, 681, 748
GlaI	GCGC	2 cut(s)	275, 746
GluI	GCNGC	7 cut(s)	76, 244, 340, 391, 530, 681, 748
GsaI	CCCAGC	1 cut(s)	641
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	6 cut(s)	111, 165, 192, 377, 422, 461
HgaI	GACGC	6 cut(s)	37, 67, 161, 193, 374, 518
HhaI	GCGC	2 cut(s)	276, 747
Hin1I	GRCGYC	5 cut(s)	78, 153, 159, 366, 510
Hin1II	CATG	4 cut(s)	331, 610, 687, 724
Hin6I	GCGC	2 cut(s)	274, 745
HinP1I	GCGC	2 cut(s)	274, 745
HincII	GTYRAC	2 cut(s)	208, 364
HindII	GTYRAC	2 cut(s)	208, 364
HinfI	GANTC	3 cut(s)	438, 546, 661
HphI	GGTGA	3 cut(s)	52, 490, 580
Hpy166II	GTNNAC	3 cut(s)	208, 364, 571
Hpy188I	TCNGA	3 cut(s)	551, 582, 767
Hpy188III	TCNNGA	2 cut(s)	196, 665
Hpy8I	GTNNAC	3 cut(s)	208, 364, 571
HpyAV	CCTTC	1 cut(s)	706
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	300, 628, 683
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	5 cut(s)	78, 153, 159, 366, 510
Hsp92II	CATG	4 cut(s)	331, 610, 687, 724
HspAI	GCGC	2 cut(s)	274, 745
Kpn2I	TCCGGA	1 cut(s)	664
KroI	GCCGGC	1 cut(s)	422
KroNI	GCCGGC	1 cut(s)	424
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	314, 591
LguI	GCTCTTC	1 cut(s)	726
Lsp1109I	GCAGC	3 cut(s)	377, 516, 667
LweI	GCATC	2 cut(s)	421, 624
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	316, 593
MboI	GATC	2 cut(s)	314, 591
MboII	GAAGA	2 cut(s)	743, 745
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	738
MluCI	AATT	3 cut(s)	26, 290, 320
MmeI	TCCRAC	1 cut(s)	306
MroI	TCCGGA	1 cut(s)	664
MroNI	GCCGGC	1 cut(s)	422
MspR9I	CCNGG	5 cut(s)	254, 379, 395, 419, 575
MunI	CAATTG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	3 cut(s)	48, 204, 747
NaeI	GCCGGC	1 cut(s)	424
NciI	CCSGG	4 cut(s)	379, 395, 419, 575
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	2 cut(s)	314, 591
NgoMIV	GCCGGC	1 cut(s)	422
NlaIII	CATG	4 cut(s)	331, 610, 687, 724
NmeAIII	GCCGAG	2 cut(s)	108, 168
NmuCI	GTSAC	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	288
PaeR7I	CTCGAG	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	5 cut(s)	135, 147, 156, 201, 357
PdiI	GCCGGC	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	438, 546, 661
PflFI	GACNNNGTC	1 cut(s)	518
PkrI	GCNGC	7 cut(s)	77, 245, 341, 392, 531, 682, 749
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	478
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	252
PspPI	GGNCC	3 cut(s)	226, 279, 376
PspPPI	RGGWCCY	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	314
PsyI	GACNNNGTC	1 cut(s)	518
SalI	GTCGAC	1 cut(s)	362
SapI	GCTCTTC	1 cut(s)	726
SatI	GCNGC	7 cut(s)	76, 244, 340, 391, 530, 681, 748
Sau3AI	GATC	2 cut(s)	314, 591
Sau96I	GGNCC	3 cut(s)	226, 279, 376
ScrFI	CCNGG	5 cut(s)	254, 379, 395, 419, 575
SduI	GDGCHC	1 cut(s)	738
SetI	ASST	6 cut(s)	65, 162, 177, 183, 228, 503
SfaNI	GCATC	2 cut(s)	421, 624
Sfr274I	CTCGAG	1 cut(s)	194
SfuI	TTCGAA	1 cut(s)	288
SgrDI	CGTCGACG	1 cut(s)	362
SinI	GGWCC	2 cut(s)	226, 279
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	26, 290, 320
StyD4I	CCNGG	5 cut(s)	252, 377, 393, 417, 573
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	9 cut(s)	17, 150, 177, 195, 222, 249, 288, 363, 411
TasI	AATT	3 cut(s)	26, 290, 320
TauI	GCSGC	4 cut(s)	78, 246, 342, 750
TfiI	GAWTC	3 cut(s)	438, 546, 661
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	390, 529, 680
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	391, 430, 725
TspGWI	ACGGA	2 cut(s)	127, 689
Tth111I	GACNNNGTC	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	226, 279
XagI	CCTNNNNNAGG	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	363
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.