Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0017186

Physical Location & Seq

Genomic Coordinates Forward (+)

28896501 .. 28897474

Gene Structure 974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G300600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCTCTCTCTTCAACTCGCCACCGTCATCAATCCCACGCCCTCCTTCCTCACCAACACAAACCCCTTTAAACCCAAAACCCTAAAACCCAACCCGTCTTCCCCATTCACTGTTCGCTCCGTCCTCCAATACAATAGGAAGCCCCAATTGTCCGGCGATACCCCCCGCGTCGTCGTCATCACCTCCGGTAAAGGCGGTGTCGGCAAGACCACCACCACCGCCAATGTCGGCCTCTCCCTCGCCCGCCTCGGCTTCTCTGTCGTCGCCATCGACGCCGACGTCGGCCTCCGCAACCTCGACCTCCTCCTCGGCCTCGAGAACCGCGTCAACTACACCGTCGTCGAGGTGCTCAACGGCGATTGCAGGCTCGACCAGGCTCTCGTCAGAGACAAGCGCTGGTCCAACTTCGAGCTGCTCTGCATCTCCAAGCCCAGGTCGAAATTGCCGATGGGGTTCGGCGGCAAAGCCTTGGTTTGGGTCGTCGACGCCTTGAAAGCCAGGCAGGAGGGCTGCCCGGACTTCATTCTCATCGACTGCCCGGCAGGCATCGATGCCGGGTTCATCACAGCAATTACGCCGGCCAATGAGGCCGTGCTCGTGACCACGCCGGACATCACGAGCTTGAGAGACGCTGACAGAGTCATTGGGTTGCTGGAGTGTGACGGAATTAGGGATATCAAGATGATGGTGAACCGGGTTCGGACCGATATGATCAAAGGTGAGGATATGATGTCGGTGCTGGATGTGCAGGAGATGTTGGGCTTGGCATTGTTGGGGATGATACCGGAGGATACGGAGGTAATCAGAAGCACCAACAGAGGGTATCCTCTGGTTTTGAATAGGCCGCCCACATTGGCTGGACTGGCTTTCGAGCAGGCAGCATGGAGGCTTGTTGAGCAGGACAGCATGAAGGCTGTCATGGTTGAGGAAGAGCCAAAGAAGAAGCGCGGCTTTTTCTCCTTTTTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030899 GO:0031967 GO:0031975 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiA

Protein Analysis

324

Amino Acids

35.35

Weight (kDa)

8.23

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24020
fragaria_vesca	FvH4_7g30210
malus_domestica	MD07G1278700.v1.1
prunus_persica	Prupe.2G300600_v2.0.a1
pyrus_communis	pycom07g25360
rosa_chinensis	RchiOBHm_Chr1g0378251
rosa_laevigata	RLG00000026456
rosa_multiflora	Rmu_sc0006315.1_g000003 Rmu_sc0038642.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280610
rosa_rugosa	Rorug01G0407500
rosa_samantha	Rh1AG422300
rosa_wichuraiana	Rw1G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AatII	GACGTC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	3 cut(s)	168, 324, 948
AciI	CCGC	9 cut(s)	166, 195, 219, 244, 289, 322, 459, 845, 948
AcoI	YGGCCR	1 cut(s)	579
AcyI	GRCGYC	3 cut(s)	273, 279, 486
AfeI	AGCGCT	1 cut(s)	395
AfiI	CCNNNNNNNGG	3 cut(s)	432, 474, 819
AgsI	TTSAA	3 cut(s)	14, 493, 838
AjnI	CCWGG	3 cut(s)	372, 431, 497
AluBI	AGCT	2 cut(s)	412, 621
AluI	AGCT	2 cut(s)	412, 621
Alw21I	GWGCWC	2 cut(s)	351, 597
Alw26I	GTCTC	2 cut(s)	381, 621
Ama87I	CYCGRG	1 cut(s)	314
Aor51HI	AGCGCT	1 cut(s)	395
AoxI	GGCC	6 cut(s)	229, 283, 310, 579, 588, 842
ApeKI	GCWGC	3 cut(s)	412, 510, 878
AspLEI	GCGC	2 cut(s)	396, 948
AspS9I	GGNCC	2 cut(s)	399, 702
AsuC2I	CCSGG	4 cut(s)	515, 539, 556, 695
AsuHPI	GGTGA	4 cut(s)	43, 172, 700, 731
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	399, 702
BaeI	ACNNNNGTAYC	2 cut(s)	783, 816
BauI	CACGAG	2 cut(s)	596, 616
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	2 cut(s)	351, 597
BbvI	GCAGC	3 cut(s)	399, 497, 890
BccI	CCATC	3 cut(s)	275, 442, 679
BceAI	ACGGC	2 cut(s)	370, 575
BciT130I	CCWGG	3 cut(s)	374, 433, 499
BciVI	GTATCC	2 cut(s)	784, 834
BclI	TGATCA	1 cut(s)	711
BcnI	CCSGG	4 cut(s)	515, 539, 556, 695
BcoDI	GTCTC	2 cut(s)	381, 621
BfaI	CTAG	1 cut(s)	970
BfoI	RGCGCY	1 cut(s)	397
BfuI	GTATCC	2 cut(s)	784, 834
BglI	GCCNNNNNGGC	2 cut(s)	543, 587
BisI	GCNGC	6 cut(s)	413, 460, 511, 845, 879, 949
BlsI	GCNGC	6 cut(s)	414, 461, 512, 846, 880, 950
Bme1390I	CCNGG	7 cut(s)	374, 433, 499, 515, 539, 556, 695
Bme18I	GGWCC	2 cut(s)	399, 702
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	399, 702
BmrFI	CCNGG	7 cut(s)	374, 433, 499, 515, 539, 556, 695
BmsI	GCATC	3 cut(s)	429, 541, 555
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	643
BpuMI	CCSGG	4 cut(s)	515, 539, 556, 695
Bsa29I	ATCGAT	1 cut(s)	549
BsaHI	GRCGYC	3 cut(s)	273, 279, 486
BsaJI	CCNNGG	4 cut(s)	247, 307, 431, 468
BsaWI	WCCGGW	2 cut(s)	185, 784
Bsc4I	CCNNNNNNNGG	3 cut(s)	432, 474, 819
Bse118I	RCCGGY	1 cut(s)	577
Bse1I	ACTGG	1 cut(s)	867
BseBI	CCWGG	3 cut(s)	374, 433, 499
BseCI	ATCGAT	1 cut(s)	549
BseDI	CCNNGG	4 cut(s)	247, 307, 431, 468
BseGI	GGATG	2 cut(s)	748, 783
BseLI	CCNNNNNNNGG	3 cut(s)	432, 474, 819
BseNI	ACTGG	1 cut(s)	867
BseRI	GAGGAG	2 cut(s)	293, 296
BseXI	GCAGC	3 cut(s)	399, 497, 890
BsgI	GTGCAG	1 cut(s)	767
Bsh1236I	CGCG	3 cut(s)	168, 324, 948
BshFI	GGCC	6 cut(s)	231, 285, 312, 581, 590, 844
BshVI	ATCGAT	1 cut(s)	549
BsiHKAI	GWGCWC	2 cut(s)	351, 597
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	9 cut(s)	153, 186, 515, 539, 555, 578, 608, 694, 785
BslI	CCNNNNNNNGG	3 cut(s)	432, 474, 819
BsmAI	GTCTC	2 cut(s)	381, 621
BsmBI	CGTCTC	1 cut(s)	621
BsnI	GGCC	6 cut(s)	231, 285, 312, 581, 590, 844
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	351, 597
Bsp143I	GATC	1 cut(s)	711
BspACI	CCGC	9 cut(s)	166, 195, 219, 244, 289, 322, 459, 845, 948
BspANI	GGCC	6 cut(s)	231, 285, 312, 581, 590, 844
BspDI	ATCGAT	1 cut(s)	549
BspFNI	CGCG	3 cut(s)	168, 324, 948
BspQI	GCTCTTC	1 cut(s)	924
BsrFI	RCCGGY	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	867
BssAI	RCCGGY	1 cut(s)	577
BssECI	CCNNGG	4 cut(s)	247, 307, 431, 468
BssMI	GATC	1 cut(s)	711
BssNI	GRCGYC	3 cut(s)	273, 279, 486
BssSI	CACGAG	2 cut(s)	596, 616
BssT1I	CCWWGG	1 cut(s)	468
Bst2BI	CACGAG	2 cut(s)	596, 616
Bst2UI	CCWGG	3 cut(s)	374, 433, 499
Bst4CI	ACNGT	3 cut(s)	25, 112, 337
Bst6I	CTCTTC	2 cut(s)	15, 924
BstACI	GRCGYC	3 cut(s)	273, 279, 486
BstC8I	GCNNGC	5 cut(s)	244, 365, 544, 579, 876
BstF5I	GGATG	2 cut(s)	748, 783
BstFNI	CGCG	3 cut(s)	168, 324, 948
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	2 cut(s)	396, 948
BstKTI	GATC	1 cut(s)	714
BstMAI	GTCTC	2 cut(s)	381, 621
BstMBI	GATC	1 cut(s)	711
BstMWI	GCNNNNNNNGC	8 cut(s)	201, 272, 494, 543, 587, 745, 863, 895
BstNI	CCWGG	3 cut(s)	374, 433, 499
BstSCI	CCNGG	7 cut(s)	372, 431, 497, 513, 537, 554, 693
BstUI	CGCG	3 cut(s)	168, 324, 948
BstV1I	GCAGC	3 cut(s)	399, 497, 890
BstV2I	GAAGAC	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	549
BsuI	GTATCC	2 cut(s)	784, 834
BsuRI	GGCC	6 cut(s)	231, 285, 312, 581, 590, 844
BsuTUI	ATCGAT	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	748, 783
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	5 cut(s)	244, 365, 544, 579, 876
CfoI	GCGC	2 cut(s)	396, 948
Cfr10I	RCCGGY	1 cut(s)	577
Cfr13I	GGNCC	2 cut(s)	399, 702
ClaI	ATCGAT	1 cut(s)	549
CpoI	CGGWCCG	1 cut(s)	702
CseI	GACGC	5 cut(s)	157, 281, 313, 494, 638
CspI	CGGWCCG	1 cut(s)	702
CviAII	CATG	3 cut(s)	882, 907, 919
DpnI	GATC	1 cut(s)	713
DpnII	GATC	1 cut(s)	711
DraI	TTTAAA	1 cut(s)	70
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	2 cut(s)	15, 924
EarI	CTCTTC	2 cut(s)	15, 924
Eco130I	CCWWGG	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	676
Eco47I	GGWCC	2 cut(s)	399, 702
Eco47III	AGCGCT	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	314
EcoRII	CCWGG	3 cut(s)	372, 431, 497
EcoRV	GATATC	1 cut(s)	676
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	621
FaeI	CATG	3 cut(s)	885, 910, 922
FaiI	YATR	5 cut(s)	710, 728, 883, 908, 920
FalI	AAGNNNNNCTT	2 cut(s)	935, 967
FatI	CATG	3 cut(s)	881, 906, 918
FauI	CCCGC	2 cut(s)	173, 251
FbaI	TGATCA	1 cut(s)	711
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	6 cut(s)	413, 460, 511, 845, 879, 949
FokI	GGATG	2 cut(s)	755, 790
Fsp4HI	GCNGC	6 cut(s)	413, 460, 511, 845, 879, 949
FspBI	CTAG	1 cut(s)	970
GlaI	GCGC	2 cut(s)	395, 947
GluI	GCNGC	6 cut(s)	413, 460, 511, 845, 879, 949
GsuI	CTGGAG	1 cut(s)	674
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	6 cut(s)	231, 285, 312, 581, 590, 844
HapII	CCGG	9 cut(s)	153, 186, 515, 539, 555, 578, 608, 694, 785
HgaI	GACGC	5 cut(s)	157, 281, 313, 494, 638
HhaI	GCGC	2 cut(s)	396, 948
Hin1I	GRCGYC	3 cut(s)	273, 279, 486
Hin1II	CATG	3 cut(s)	885, 910, 922
Hin6I	GCGC	2 cut(s)	394, 946
HinP1I	GCGC	2 cut(s)	394, 946
HincII	GTYRAC	2 cut(s)	328, 484
HindII	GTYRAC	2 cut(s)	328, 484
HinfI	GANTC	1 cut(s)	639
HpaII	CCGG	9 cut(s)	153, 186, 515, 539, 555, 578, 608, 694, 785
HphI	GGTGA	4 cut(s)	43, 172, 700, 731
Hpy166II	GTNNAC	3 cut(s)	328, 484, 691
Hpy188I	TCNGA	3 cut(s)	386, 702, 806
Hpy188III	TCNNGA	4 cut(s)	316, 598, 616, 679
Hpy8I	GTNNAC	3 cut(s)	328, 484, 691
HpyAV	CCTTC	2 cut(s)	55, 904
HpyCH4III	ACNGT	3 cut(s)	25, 112, 337
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	363, 420, 748
HpyF10VI	GCNNNNNNNGC	8 cut(s)	201, 272, 494, 543, 587, 745, 863, 895
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	3 cut(s)	273, 279, 486
Hsp92II	CATG	3 cut(s)	885, 910, 922
HspAI	GCGC	2 cut(s)	394, 946
KroI	GCCGGC	1 cut(s)	577
KroNI	GCCGGC	1 cut(s)	579
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	1 cut(s)	711
LguI	GCTCTTC	1 cut(s)	924
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	3 cut(s)	399, 497, 890
LweI	GCATC	3 cut(s)	429, 541, 555
MaeI	CTAG	1 cut(s)	970
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	598, 659
MalI	GATC	1 cut(s)	713
MboI	GATC	1 cut(s)	711
MboII	GAAGA	3 cut(s)	90, 941, 952
MfeI	CAATTG	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	351, 597
MluCI	AATT	4 cut(s)	146, 440, 570, 666
MlyI	GAGTC	1 cut(s)	648
MmeI	TCCRAC	1 cut(s)	426
MroNI	GCCGGC	1 cut(s)	577
MseI	TTAA	1 cut(s)	69
MspI	CCGG	9 cut(s)	153, 186, 515, 539, 555, 578, 608, 694, 785
MspR9I	CCNGG	7 cut(s)	374, 433, 499, 515, 539, 556, 695
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	3 cut(s)	374, 433, 499
MvnI	CGCG	3 cut(s)	168, 324, 948
MwoI	GCNNNNNNNGC	8 cut(s)	201, 272, 494, 543, 587, 745, 863, 895
NaeI	GCCGGC	1 cut(s)	579
NciI	CCSGG	4 cut(s)	515, 539, 556, 695
NdeII	GATC	1 cut(s)	711
NgoMIV	GCCGGC	1 cut(s)	577
NlaIII	CATG	3 cut(s)	885, 910, 922
NmeAIII	GCCGAG	2 cut(s)	228, 288
NmuCI	GTSAC	2 cut(s)	598, 659
PaeR7I	CTCGAG	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	924
PcsI	WCGNNNNNNNCGW	4 cut(s)	267, 276, 321, 443
PdiI	GCCGGC	1 cut(s)	579
PflFI	GACNNNGTC	1 cut(s)	638
PkrI	GCNGC	6 cut(s)	414, 461, 512, 846, 880, 950
PleI	GAGTC	1 cut(s)	647
PpsI	GAGTC	1 cut(s)	647
Psp6I	CCWGG	3 cut(s)	372, 431, 497
PspGI	CCWGG	3 cut(s)	372, 431, 497
PspPI	GGNCC	2 cut(s)	399, 702
PsyI	GACNNNGTC	1 cut(s)	638
Rsr2I	CGGWCCG	1 cut(s)	702
RsrII	CGGWCCG	1 cut(s)	702
SalI	GTCGAC	1 cut(s)	482
SapI	GCTCTTC	1 cut(s)	924
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	6 cut(s)	413, 460, 511, 845, 879, 949
Sau3AI	GATC	1 cut(s)	711
Sau96I	GGNCC	2 cut(s)	399, 702
SchI	GAGTC	1 cut(s)	648
ScrFI	CCNGG	7 cut(s)	374, 433, 499, 515, 539, 556, 695
SduI	GDGCHC	2 cut(s)	351, 597
SfaNI	GCATC	3 cut(s)	429, 541, 555
SfiI	GGCCNNNNNGGCC	1 cut(s)	587
Sfr274I	CTCGAG	1 cut(s)	314
SgrDI	CGTCGACG	1 cut(s)	482
SinI	GGWCC	2 cut(s)	399, 702
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	314, 622
SmoI	CTYRAG	2 cut(s)	314, 622
Sse9I	AATT	4 cut(s)	146, 440, 570, 666
SsiI	CCGC	9 cut(s)	166, 195, 219, 244, 289, 322, 459, 845, 948
SspMI	CTAG	1 cut(s)	970
StyD4I	CCNGG	7 cut(s)	372, 431, 497, 513, 537, 554, 693
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	3 cut(s)	25, 112, 337
TaiI	ACGT	1 cut(s)	282
TaqII	GACCGA	1 cut(s)	719
TasI	AATT	4 cut(s)	146, 440, 570, 666
TauI	GCSGC	3 cut(s)	462, 847, 951
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	2 cut(s)	598, 659
TseI	GCWGC	3 cut(s)	412, 510, 878
Tsp45I	GTSAC	2 cut(s)	598, 659
TspDTI	ATGAA	3 cut(s)	511, 550, 923
TspGWI	ACGGA	3 cut(s)	109, 678, 809
TspRI	CASTG	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	638
VpaK11BI	GGWCC	2 cut(s)	399, 702
XhoI	CTCGAG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	1 cut(s)	970
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.