Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009718

Physical Location & Seq

Genomic Coordinates Reverse (-)

22126797 .. 22129979

Gene Structure 3183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30341.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGCTCGGAGAGCGGCGGCCGGAGCGTTCTTGCTCCGCCGGAATGTAACGCACAGGGACTCTCCAAACTGTCAAAAATCAGATATACAAGGTCTTTTCTAGTCTCGTTGGCGAATTCAAGAACAGAAACAGGATTACTTGAACCGTCAGTTCTAAGTGAACTTGATAGTCGATTGGAGCGGCCATGGGTAACTTCTCATGATTCAGATTCTAAGAGTTGTCAAGAGAACTTAGATAAAGGGCTGCTTAGAGTTTTATCCAAATCCAGGGAACCAAAAACCATATTGGTACCCTTAAGACAGACAATAGGTGATAGACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF21

Protein Analysis

108

Amino Acids

11.87

Weight (kDa)

9.44

Isoelectric Point (pI)

70.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30290 FvH4_7g30290 FvH4_7g30341
malus_domestica	MD01G1208800.v1.1
prunus_persica	Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378421
rosa_laevigata	RLG00000026430 RLG00000026437
rosa_multiflora	Rmu_sc0000938.1_g000003 Rmu_sc0040188.1_g000001 Rmu_sc0041710.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280470
rosa_rugosa	Rorug01G0408600
rosa_samantha	Rh1AG430100 Rh1BG387800 Rh1CG401300 Rh1DG418900
rosa_wichuraiana	Rw1G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	289
AccBSI	CCGCTC	2 cut(s)	15, 181
AciI	CCGC	4 cut(s)	15, 18, 38, 181
AcoI	YGGCCR	2 cut(s)	19, 182
AcsI	RAATTY	1 cut(s)	115
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	267
AflII	CTTAAG	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	120, 143
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	109
AoxI	GGCC	2 cut(s)	19, 182
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	115
Asp718I	GGTACC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	101
BfrI	CTTAAG	1 cut(s)	295
BisI	GCNGC	4 cut(s)	16, 19, 182, 245
BlsI	GCNGC	4 cut(s)	17, 20, 183, 246
Bme1390I	CCNGG	1 cut(s)	268
BmiI	GGNNCC	2 cut(s)	273, 291
BmrFI	CCNGG	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	185, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	185, 267
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseX3I	CGGCCG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	21, 184
BshNI	GGYRCC	1 cut(s)	289
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	22, 41
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	21, 184
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	185
BspACI	CCGC	4 cut(s)	15, 18, 38, 181
BspANI	GGCC	2 cut(s)	21, 184
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	273, 291
BspT107I	GGYRCC	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	295
BsrBI	CCGCTC	2 cut(s)	15, 181
BssECI	CCNNGG	2 cut(s)	185, 267
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	72, 147
BstAFI	CTTAAG	1 cut(s)	295
BstDEI	CTNAG	4 cut(s)	155, 213, 232, 248
BstDSI	CCRYGG	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	109
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 24
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	231
BstZI	CGGCCG	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	21, 184
BtgI	CCRYGG	1 cut(s)	185
CciI	TCATGA	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	2 cut(s)	186, 200
CviJI	RGCY	4 cut(s)	6, 21, 184, 244
CviKI_1	RGCY	4 cut(s)	6, 21, 184, 244
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	4 cut(s)	155, 213, 232, 248
EaeI	YGGCCR	2 cut(s)	19, 182
EagI	CGGCCG	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	6
EclXI	CGGCCG	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	8
Eco52I	CGGCCG	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	189, 203
FaiI	YATR	4 cut(s)	87, 187, 201, 284
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	2 cut(s)	185, 199
Fnu4HI	GCNGC	4 cut(s)	16, 19, 182, 245
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	16, 19, 182, 245
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	4 cut(s)	16, 19, 182, 245
HaeIII	GGCC	2 cut(s)	21, 184
HapII	CCGG	2 cut(s)	22, 41
Hin1II	CATG	2 cut(s)	189, 203
HinfI	GANTC	3 cut(s)	60, 203, 209
HpaII	CCGG	2 cut(s)	22, 41
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	3 cut(s)	10, 83, 208
Hpy188III	TCNNGA	3 cut(s)	120, 200, 224
Hpy8I	GTNNAC	1 cut(s)	161
HpyCH4III	ACNGT	2 cut(s)	72, 147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 24
HpyF3I	CTNAG	4 cut(s)	155, 213, 232, 248
Hsp92II	CATG	2 cut(s)	189, 203
KpnI	GGTACC	1 cut(s)	293
LmnI	GCTCC	3 cut(s)	24, 40, 178
LpnPI	CCDG	6 cut(s)	35, 41, 54, 117, 253, 280
Lsp1109I	GCAGC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	47, 190
MbiI	CCGCTC	2 cut(s)	15, 181
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	115
MlyI	GAGTC	1 cut(s)	54
MseI	TTAA	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	295
MspI	CCGG	2 cut(s)	22, 41
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	12, 24
NcoI	CCATGG	1 cut(s)	185
NlaIII	CATG	2 cut(s)	189, 203
NlaIV	GGNNCC	2 cut(s)	273, 291
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	203, 209
PkrI	GCNGC	4 cut(s)	17, 20, 183, 246
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	2 cut(s)	273, 291
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	4 cut(s)	16, 19, 182, 245
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	3 cut(s)	8, 95, 313
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	4 cut(s)	15, 18, 38, 181
SspMI	CTAG	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	72, 147
TaqI	TCGA	1 cut(s)	172
TasI	AATT	1 cut(s)	115
TauI	GCSGC	3 cut(s)	18, 21, 184
TfiI	GAWTC	2 cut(s)	203, 209
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseI	GCWGC	1 cut(s)	244
Vha464I	CTTAAG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	115
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.