Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009718

Physical Location & Seq

Genomic Coordinates Forward (+)

2992950 .. 2996986

Gene Structure 4037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026430

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAATACCATCTCATCCCGAACAAAGAGAAAGACGGAGCAGAAGAAGTCAATGAACGTGATTTGTGGAGTAGAATGGGAAAGGAAAAATTTTCCTGAGGTGACGAGGGAAGGACAGAAGGAAGCAGTCCAAGATAAGCAAAAGCAAAATTCAAATGAGCGAGACAAAATCATCGAAATTAACATGCCGTTGGAGGTGTCTGAAAATGATGAGATAATCAACTCCCTAGTACCAGAGTTTCCTGCTACAGGTAGCGTAGAAAACGCTGAGGAAAAGCCTGCCTGTGGCATCTCTTGCACTAAAGGATCTGAATATATAGCTCATGGCGTCTCAAATGAACTTGCCACCATGGTTCGAGAAAGTTTGAAATCTGCTGCAGAAGAAAGCGACGATCGGTGTATTCTTGCTCAGTCTGAAACAAACACGCATGGACTTTTCAATGAACTTGATTTTCGGCTGGACGGACCATTGCAAGCTTCTTATGATTCAGATTCCAAGAGTTGTCATGACAGCGTACCTAAAGGTCGGCTCAGTTCTGAGAATGTTGGACTATTGGGACCTGGTTCTTTACTGGGAGTCAATGGTGATATTGATGATGCTTATTCTCCCAAGGTTGAAGAACATAATCTATCTCTACTCCATAAGAGCGAAGAACCATATCGGCCTCCACGCCTTTTTAAGAGAAGGACAGAAGAAAGCATTCCAGGGAAGGACAGGAAGAATTCAAATGAGCATGATGAAAATGTCGAAGTTATCATGCCACTGGAGGTGTCCGAATATGATGAGATAATCCATTCCCTTGCAACAGTGCATTCTGATAATACTGCAAATCACACCCAGAGCCCGGCAATTTGTTGTTCTGAATTTGTTCATCAGTTTCCAGCTTTAGAGCAAAAGCCTGTCTATCCCATCTCTTGCACCAAAGGATCTGAATCGGTAGCTCATGGTATGTCAAATCAACATTTCACCAAGTTTCCAGACGAGCATTTGAAATCTACTACTGATGAAAACTCTGAGCAAGTATATGGATGCAAAGGCCCAGCTGTCAATCTAGGAGTTCTTGCATGTGTGGATCTTGGACACATTCTTAAACCAGACACTAAAGAAATTAGTTGTTCTATACTCTGGGATGGTTGTGATGCCGAGGACGGCAAGCAATACTCTGGTAGGCATCATGGTTCTCATCACCTTCTGTTATTGCCAGAGAAGGGACTGAACAGAATCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

410

Amino Acids

45.39

Weight (kDa)

5.18

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30290 FvH4_7g30290 FvH4_7g30341
malus_domestica	MD01G1208800.v1.1
prunus_persica	Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378421
rosa_laevigata	RLG00000026430 RLG00000026437
rosa_multiflora	Rmu_sc0000938.1_g000003 Rmu_sc0040188.1_g000001 Rmu_sc0041710.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280470
rosa_rugosa	Rorug01G0408600
rosa_samantha	Rh1AG430100 Rh1BG387800 Rh1CG401300 Rh1DG418900
rosa_wichuraiana	Rw1G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	313, 934, 1080
AcsI	RAATTY	4 cut(s)	88, 148, 721, 863
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	231, 516
AfiI	CCNNNNNNNGG	4 cut(s)	248, 284, 844, 1208
AgsI	TTSAA	6 cut(s)	153, 367, 439, 617, 726, 991
AjnI	CCWGG	2 cut(s)	559, 703
AluBI	AGCT	5 cut(s)	320, 476, 884, 941, 1043
AluI	AGCT	5 cut(s)	320, 476, 884, 941, 1043
Alw26I	GTCTC	2 cut(s)	156, 334
AlwI	GGATC	3 cut(s)	313, 934, 1080
AoxI	GGCC	2 cut(s)	662, 1036
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	4 cut(s)	88, 148, 721, 863
Asp700I	GAANNNNTTC	2 cut(s)	699, 867
AspS9I	GGNCC	3 cut(s)	464, 557, 1037
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	4 cut(s)	112, 596, 958, 1178
AvaII	GGWCC	2 cut(s)	464, 557
AxyI	CCTNAGG	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	845
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	3 cut(s)	17, 917, 1124
BceAI	ACGGC	2 cut(s)	172, 1165
BciT130I	CCWGG	2 cut(s)	561, 705
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	2 cut(s)	156, 334
BfaI	CTAG	2 cut(s)	227, 1052
BfmI	CTRYAG	2 cut(s)	246, 375
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	3 cut(s)	561, 705, 845
Bme18I	GGWCC	2 cut(s)	464, 557
BmgT120I	GGNCC	3 cut(s)	464, 557, 1037
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	3 cut(s)	561, 705, 845
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	5 cut(s)	297, 586, 1019, 1129, 1180
BmuI	ACTGGG	1 cut(s)	581
BpmI	CTGGAG	1 cut(s)	785
Bpu10I	CCTNAGC	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	845
BsaBI	GATNNNNATC	1 cut(s)	931
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	4 cut(s)	348, 609, 704, 1143
Bsc4I	CCNNNNNNNGG	4 cut(s)	248, 284, 844, 1208
Bse1I	ACTGG	2 cut(s)	576, 768
Bse21I	CCTNAGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	467
Bse8I	GATNNNNATC	1 cut(s)	931
BseBI	CCWGG	2 cut(s)	561, 705
BseDI	CCNNGG	4 cut(s)	348, 609, 704, 1143
BseGI	GGATG	3 cut(s)	14, 1034, 1135
BseJI	GATNNNNATC	1 cut(s)	931
BseLI	CCNNNNNNNGG	4 cut(s)	248, 284, 844, 1208
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	6 cut(s)	87, 258, 422, 528, 544, 1005
BseNI	ACTGG	2 cut(s)	576, 768
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	1039
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	2 cut(s)	664, 1038
BsiEI	CGRYCG	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	845
BslFI	GGGAC	2 cut(s)	570, 1224
BslI	CCNNNNNNNGG	4 cut(s)	248, 284, 844, 1208
BsmAI	GTCTC	2 cut(s)	156, 334
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	570, 1224
BsmI	GAATGC	2 cut(s)	699, 811
BsnI	GGCC	2 cut(s)	664, 1038
Bsp1286I	GDGCHC	1 cut(s)	845
Bsp143I	GATC	4 cut(s)	305, 391, 926, 1072
Bsp19I	CCATGG	1 cut(s)	348
BspANI	GGCC	2 cut(s)	664, 1038
BspCNI	CTCAG	6 cut(s)	88, 259, 421, 529, 543, 1006
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	3 cut(s)	313, 934, 1080
BsrDI	GCAATG	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	576, 768
BssECI	CCNNGG	4 cut(s)	348, 609, 704, 1143
BssMI	GATC	4 cut(s)	305, 391, 926, 1072
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	348, 609
Bst2UI	CCWGG	2 cut(s)	561, 705
Bst4CI	ACNGT	1 cut(s)	808
BstACI	GRCGYC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstC8I	GCNNGC	3 cut(s)	279, 474, 1154
BstDEI	CTNAG	6 cut(s)	96, 267, 408, 530, 537, 1014
BstDSI	CCRYGG	1 cut(s)	348
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	3 cut(s)	14, 1034, 1135
BstKTI	GATC	4 cut(s)	308, 394, 929, 1075
BstMAI	GTCTC	2 cut(s)	156, 334
BstMBI	GATC	4 cut(s)	305, 391, 926, 1072
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	2 cut(s)	561, 705
BstNSI	RCATGY	2 cut(s)	187, 1068
BstSCI	CCNGG	3 cut(s)	559, 703, 843
BstSFI	CTRYAG	2 cut(s)	246, 375
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	3 cut(s)	305, 926, 1072
BstYI	RGATCY	3 cut(s)	305, 926, 1072
Bsu36I	CCTNAGG	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	664, 1038
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	14, 1034, 1135
BtsIMutI	CAGTG	2 cut(s)	761, 813
Cac8I	GCNNGC	3 cut(s)	279, 474, 1154
CciI	TCATGA	1 cut(s)	505
Cfr13I	GGNCC	3 cut(s)	464, 557, 1037
CseI	GACGC	1 cut(s)	316
CsiI	ACCWGGT	1 cut(s)	559
Csp6I	GTAC	2 cut(s)	230, 515
CviQI	GTAC	2 cut(s)	230, 515
DdeI	CTNAG	6 cut(s)	96, 267, 408, 530, 537, 1014
DpnI	GATC	4 cut(s)	307, 393, 928, 1074
DpnII	GATC	4 cut(s)	305, 391, 926, 1072
Eco130I	CCWWGG	2 cut(s)	348, 609
Eco24I	GRGCYC	1 cut(s)	845
Eco47I	GGWCC	2 cut(s)	464, 557
Eco81I	CCTNAGG	1 cut(s)	96
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	721
EcoRII	CCWGG	2 cut(s)	559, 703
EcoT14I	CCWWGG	2 cut(s)	348, 609
EcoT38I	GRGCYC	1 cut(s)	845
ErhI	CCWWGG	2 cut(s)	348, 609
Esp3I	CGTCTC	1 cut(s)	334
FaqI	GGGAC	2 cut(s)	570, 1224
FauNDI	CATATG	1 cut(s)	1226
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	2 cut(s)	1041, 1142
FriOI	GRGCYC	1 cut(s)	845
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	2 cut(s)	227, 1052
GluI	GCNGC	1 cut(s)	375
GsaI	CCCAGC	1 cut(s)	1043
GsuI	CTGGAG	1 cut(s)	785
HaeIII	GGCC	2 cut(s)	664, 1038
HapII	CCGG	1 cut(s)	845
HgaI	GACGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	5 cut(s)	485, 491, 576, 932, 1221
HpaII	CCGG	1 cut(s)	845
HphI	GGTGA	4 cut(s)	112, 596, 958, 1178
Hpy188III	TCNNGA	5 cut(s)	18, 95, 356, 506, 977
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	6 cut(s)	104, 112, 678, 703, 1199, 1201
HpyCH4III	ACNGT	1 cut(s)	808
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	9 cut(s)	297, 377, 472, 803, 811, 827, 918, 1032, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	6 cut(s)	96, 267, 408, 530, 537, 1014
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	305, 391, 926, 1072
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	5 cut(s)	297, 586, 1019, 1129, 1180
MabI	ACCWGGT	1 cut(s)	559
MaeI	CTAG	2 cut(s)	227, 1052
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	4 cut(s)	307, 393, 928, 1074
MboI	GATC	4 cut(s)	305, 391, 926, 1072
MboII	GAAGA	6 cut(s)	55, 392, 629, 662, 704, 730
MflI	RGATCY	3 cut(s)	305, 926, 1072
MhlI	GDGCHC	1 cut(s)	845
MluCI	AATT	7 cut(s)	88, 148, 177, 721, 849, 863, 1107
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	2 cut(s)	171, 526
MnlI	CCTC	7 cut(s)	91, 99, 187, 262, 675, 760, 1138
MroXI	GAANNNNTTC	2 cut(s)	699, 867
MseI	TTAA	3 cut(s)	180, 678, 1089
MspA1I	CMGCKG	1 cut(s)	1043
MspI	CCGG	1 cut(s)	845
MspR9I	CCNGG	3 cut(s)	561, 705, 845
Mva1269I	GAATGC	2 cut(s)	699, 811
MvaI	CCWGG	2 cut(s)	561, 705
MwoI	GCNNNNNNNGC	1 cut(s)	294
NciI	CCSGG	1 cut(s)	845
NcoI	CCATGG	1 cut(s)	348
NdeI	CATATG	1 cut(s)	1226
NdeII	GATC	4 cut(s)	305, 391, 926, 1072
NlaIV	GGNNCC	1 cut(s)	558
NmeAIII	GCCGAG	1 cut(s)	1168
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	2 cut(s)	187, 1068
PagI	TCATGA	1 cut(s)	505
PctI	GAATGC	2 cut(s)	699, 811
PdmI	GAANNNNTTC	2 cut(s)	699, 867
PfeI	GAWTC	4 cut(s)	485, 491, 932, 1221
PkrI	GCNGC	1 cut(s)	376
Ple19I	CGATCG	1 cut(s)	394
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	559, 703
PspFI	CCCAGC	1 cut(s)	1039
PspGI	CCWGG	2 cut(s)	559, 703
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	3 cut(s)	464, 557, 1037
PspPPI	RGGWCCY	1 cut(s)	557
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	3 cut(s)	305, 926, 1072
PvuI	CGATCG	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	1043
RsaI	GTAC	2 cut(s)	231, 516
RsaNI	GTAC	2 cut(s)	230, 515
SaqAI	TTAA	3 cut(s)	180, 678, 1089
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	4 cut(s)	305, 391, 926, 1072
Sau96I	GGNCC	3 cut(s)	464, 557, 1037
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	3 cut(s)	561, 705, 845
SduI	GDGCHC	1 cut(s)	845
SexAI	ACCWGGT	1 cut(s)	559
SfaNI	GCATC	5 cut(s)	297, 586, 1019, 1129, 1180
SfcI	CTRYAG	2 cut(s)	246, 375
SinI	GGWCC	2 cut(s)	464, 557
Sse9I	AATT	7 cut(s)	88, 148, 177, 721, 849, 863, 1107
SspMI	CTAG	2 cut(s)	227, 1052
StyD4I	CCNGG	3 cut(s)	559, 703, 843
StyI	CCWWGG	2 cut(s)	348, 609
TaaI	ACNGT	1 cut(s)	808
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	3 cut(s)	174, 355, 747
TasI	AATT	7 cut(s)	88, 148, 177, 721, 849, 863, 1107
TfiI	GAWTC	4 cut(s)	485, 491, 932, 1221
Tru1I	TTAA	3 cut(s)	180, 678, 1089
Tru9I	TTAA	3 cut(s)	180, 678, 1089
TscAI	CASTG	2 cut(s)	768, 813
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	7 cut(s)	17, 68, 351, 456, 753, 860, 1020
TspGWI	ACGGA	2 cut(s)	50, 477
TspRI	CASTG	2 cut(s)	768, 813
VpaK11BI	GGWCC	2 cut(s)	464, 557
XagI	CCTNNNNNAGG	1 cut(s)	246
XapI	RAATTY	4 cut(s)	88, 148, 721, 863
XceI	RCATGY	2 cut(s)	187, 1068
XmnI	GAANNNNTTC	2 cut(s)	699, 867
XspI	CTAG	2 cut(s)	227, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.