Rorug01G0408600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009718
Physical Location & Seq
Reverse (-)
51463688 .. 51465413
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0408600.1

Sequence Viewer

Length: 1029 bp
ATGGCTACAACTTGGCTTGAAGCACTGCCGGCCGATCATAAAAAGGTCATCATGAAGAACCTGGTTCGCGGTCGGGACAGGGCGACGGAGCTTCAGTCTCAGCTCAACAACCGCAGCAATGGCTCGACGTCGCTTTCGGCCCAGGAGCTTGTGATGGAGATCGTGTCGTCTTTCACTGAGAGTCTTTCTGTTCTGAGTGAGTCTTCCAAGTTGTGTGGTGATGCTGAGCATCAGTACTCCGGTACTAATGGCTGTGGAGCCGGTGAGATTGTTAAAGCGGAGGCGTCCCATGTGGAACAGTCGCATTGCGGTGACCGGAGCTCTGAAGATTCCGGCGAGAGCAGGAAGAGGCCGGGTTATAAGGATCGGAGAGGTTGCTACAAGCGAAGAAAGAATTCAGAGTCACGGTCAATTGTTTCATCCACAGTTGATGATGGTCAGGCTTGGAGGAAATATGGCCAGAAGGAAATCCTCAATGCTCCATATCCAAGGGCTTACTTCAGATGTACCCGCAAGTATGATCAAGGTTGCCAAGCAACCAAACAAGTCCAACAAGTCCAAGACACCCCAAAAGTGTACAAAACCACCTACATTGGAAACCACACGTGCAGAAACATGATCAGGGGTCCACAGATGATCATGGGCGCCACCGATCCTCCTACTTGGGATTCTCATGCTCCTCGTCGATCTACTGTTAGCTCGGAATCTGGATCGACCCCAATTTGCAATAAGAAAGAACATCACGGTGTTCATGATGGTCATCTCCCTAGCTCGTCGTCTATGATTCCCTTGGTTTCGGTGAAGAAAGAGGAGTGCAAGGAGGGGACGACGTCGAGTGGTCTGACGGACAATCTTAACGATACAAGTGATGTGTGGCCGGAGTTCAAGGATGATCATCATCATCATTTTGGGTTCCCTGAGACTACTGTAATGTCTAATGAGAATGCGGTTTCGAACATGCAGTACTTGGACATGGACTTGGTGGTGAAGTCTATTAATTTCGAGAATGAGTTTGATTTTGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

38.27

Weight (kDa)

6.4

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 144 - 203 5.3e-23 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AatII GACGTC 2 cut(s) 131, 833
AccB1I GGYRCC 1 cut(s) 644
AccII CGCG 1 cut(s) 69
AciI CCGC 6 cut(s) 69, 112, 278, 309, 511, 947
AclWI GGATC 3 cut(s) 372, 647, 718
AcoI YGGCCR 3 cut(s) 30, 457, 875
AcsI RAATTY 1 cut(s) 394
AcuI CTGAAG 3 cut(s) 77, 345, 484
AcvI CACGTG 1 cut(s) 606
AcyI GRCGYC 4 cut(s) 128, 284, 645, 830
AfaI GTAC 5 cut(s) 236, 244, 508, 578, 965
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 2 cut(s) 20, 886
AjnI CCWGG 2 cut(s) 60, 141
AluBI AGCT 6 cut(s) 91, 103, 148, 321, 699, 771
AluI AGCT 6 cut(s) 91, 103, 148, 321, 699, 771
Alw21I GWGCWC 1 cut(s) 323
Alw26I GTCTC 2 cut(s) 102, 914
AlwI GGATC 3 cut(s) 372, 647, 718
AoxI GGCC 5 cut(s) 30, 138, 350, 457, 875
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 394
ArsI GACNNNNNNTTYG 2 cut(s) 118, 150
AseI ATTAAT 1 cut(s) 996
Asp700I GAANNNNTTC 1 cut(s) 394
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 2 cut(s) 139, 626
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 5 cut(s) 230, 275, 323, 811, 997
AsuII TTCGAA 1 cut(s) 953
AvaII GGWCC 1 cut(s) 626
BalI TGGCCA 1 cut(s) 459
BanI GGYRCC 1 cut(s) 644
BanII GRGCYC 1 cut(s) 323
BbrPI CACGTG 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 126
BccI CCATC 3 cut(s) 148, 428, 749
BciT130I CCWGG 2 cut(s) 62, 143
BclI TGATCA 4 cut(s) 520, 618, 636, 892
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 102, 914
BfaI CTAG 1 cut(s) 768
BfoI RGCGCY 1 cut(s) 648
BisI GCNGC 1 cut(s) 115
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 116
BmcAI AGTACT 2 cut(s) 236, 965
Bme1390I CCNGG 3 cut(s) 62, 143, 354
Bme18I GGWCC 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 139, 626
BmiI GGNNCC 4 cut(s) 259, 627, 646, 914
BmrFI CCNGG 3 cut(s) 62, 143, 354
BmsI GCATC 2 cut(s) 211, 238
BpiI GAAGAC 1 cut(s) 195
Bpu1102I GCTNAGC 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 953
BpuMI CCSGG 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 606
BsaBI GATNNNNATC 4 cut(s) 158, 759, 894, 897
BsaHI GRCGYC 4 cut(s) 128, 284, 645, 830
BsaJI CCNNGG 3 cut(s) 141, 488, 789
BsaWI WCCGGW 2 cut(s) 239, 315
BsaXI ACNNNNNCTCC 6 cut(s) 80, 110, 149, 179, 640, 670
Bse118I RCCGGY 2 cut(s) 28, 260
Bse3DI GCAATG 2 cut(s) 124, 304
Bse8I GATNNNNATC 4 cut(s) 158, 759, 894, 897
BseBI CCWGG 2 cut(s) 62, 143
BseDI CCNNGG 3 cut(s) 141, 488, 789
BseGI GGATG 2 cut(s) 419, 895
BseJI GATNNNNATC 4 cut(s) 158, 759, 894, 897
BseMI GCAATG 2 cut(s) 124, 304
BseMII CTCAG 5 cut(s) 113, 168, 185, 216, 909
BseRI GAGGAG 2 cut(s) 669, 824
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 628
Bsh1236I CGCG 1 cut(s) 69
Bsh1285I CGRYCG 2 cut(s) 33, 73
BshFI GGCC 5 cut(s) 32, 140, 352, 459, 877
BshNI GGYRCC 1 cut(s) 644
BsiEI CGRYCG 2 cut(s) 33, 73
BsiHKAI GWGCWC 1 cut(s) 323
BsiSI CCGG 7 cut(s) 29, 240, 261, 316, 333, 353, 878
BslFI GGGAC 3 cut(s) 89, 271, 838
BsmAI GTCTC 2 cut(s) 102, 914
BsmFI GGGAC 3 cut(s) 89, 271, 838
BsmI GAATGC 1 cut(s) 949
BsnI GGCC 5 cut(s) 32, 140, 352, 459, 877
Bsp119I TTCGAA 1 cut(s) 953
Bsp1286I GDGCHC 1 cut(s) 323
Bsp1407I TGTACA 1 cut(s) 576
Bsp1720I GCTNAGC 1 cut(s) 225
BspACI CCGC 6 cut(s) 69, 112, 278, 309, 511, 947
BspANI GGCC 5 cut(s) 32, 140, 352, 459, 877
BspCNI CTCAG 5 cut(s) 112, 169, 186, 217, 910
BspFNI CGCG 1 cut(s) 69
BspHI TCATGA 2 cut(s) 51, 751
BspLI GGNNCC 4 cut(s) 259, 627, 646, 914
BspPI GGATC 3 cut(s) 372, 647, 718
BspT104I TTCGAA 1 cut(s) 953
BspT107I GGYRCC 1 cut(s) 644
BsrDI GCAATG 2 cut(s) 124, 304
BsrFI RCCGGY 2 cut(s) 28, 260
BsrGI TGTACA 1 cut(s) 576
BssAI RCCGGY 2 cut(s) 28, 260
BssECI CCNNGG 3 cut(s) 141, 488, 789
BssNI GRCGYC 4 cut(s) 128, 284, 645, 830
BssT1I CCWWGG 2 cut(s) 488, 789
Bst2UI CCWGG 2 cut(s) 62, 143
Bst4CI ACNGT 6 cut(s) 300, 408, 427, 694, 746, 928
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 4 cut(s) 128, 284, 645, 830
BstAUI TGTACA 1 cut(s) 576
BstBAI YACGTR 1 cut(s) 606
BstBI TTCGAA 1 cut(s) 953
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 5 cut(s) 99, 177, 194, 225, 918
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 2 cut(s) 419, 895
BstFNI CGCG 1 cut(s) 69
BstH2I RGCGCY 1 cut(s) 648
BstHHI GCGC 1 cut(s) 647
BstMAI GTCTC 2 cut(s) 102, 914
BstMCI CGRYCG 2 cut(s) 33, 73
BstMWI GCNNNNNNNGC 2 cut(s) 29, 120
BstNI CCWGG 2 cut(s) 62, 143
BstNSI RCATGY 1 cut(s) 961
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 3 cut(s) 60, 141, 352
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 195
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 5 cut(s) 32, 140, 352, 459, 877
BtsCI GGATG 2 cut(s) 419, 895
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 2 cut(s) 23, 174
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 2 cut(s) 51, 751
CfoI GCGC 1 cut(s) 647
Cfr10I RCCGGY 2 cut(s) 28, 260
Cfr13I GGNCC 2 cut(s) 139, 626
CseI GACGC 1 cut(s) 273
CsiI ACCWGGT 1 cut(s) 60
Csp6I GTAC 5 cut(s) 235, 243, 507, 577, 964
CspCI CAANNNNNGTGG 4 cut(s) 196, 231, 574, 609
CviAII CATG 8 cut(s) 52, 290, 616, 640, 674, 752, 958, 973
CviQI GTAC 5 cut(s) 235, 243, 507, 577, 964
DdeI CTNAG 5 cut(s) 99, 177, 194, 225, 918
DinI GGCGCC 1 cut(s) 646
EaeI YGGCCR 3 cut(s) 30, 457, 875
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 321
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 488, 789
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 626
Eco52I CGGCCG 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 321
Eco57I CTGAAG 3 cut(s) 77, 345, 484
Eco72I CACGTG 1 cut(s) 606
Eco91I GGTNACC 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 321
EcoO65I GGTNACC 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 394
EcoRII CCWGG 2 cut(s) 60, 141
EcoT14I CCWWGG 2 cut(s) 488, 789
EcoT38I GRGCYC 1 cut(s) 323
EgeI GGCGCC 1 cut(s) 646
EheI GGCGCC 1 cut(s) 646
ErhI CCWWGG 2 cut(s) 488, 789
FaeI CATG 8 cut(s) 55, 293, 619, 643, 677, 755, 961, 976
FaqI GGGAC 3 cut(s) 89, 271, 838
FatI CATG 8 cut(s) 51, 289, 615, 639, 673, 751, 957, 972
FauI CCCGC 1 cut(s) 518
FbaI TGATCA 4 cut(s) 520, 618, 636, 892
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 2 cut(s) 406, 902
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 1 cut(s) 768
GlaI GCGC 1 cut(s) 646
GluI GCNGC 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 648
HaeIII GGCC 5 cut(s) 32, 140, 352, 459, 877
HapII CCGG 7 cut(s) 29, 240, 261, 316, 333, 353, 878
HgaI GACGC 1 cut(s) 273
HhaI GCGC 1 cut(s) 647
Hin1I GRCGYC 4 cut(s) 128, 284, 645, 830
Hin1II CATG 8 cut(s) 55, 293, 619, 643, 677, 755, 961, 976
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HinfI GANTC 7 cut(s) 181, 200, 329, 401, 668, 704, 784
HpaII CCGG 7 cut(s) 29, 240, 261, 316, 333, 353, 878
HphI GGTGA 5 cut(s) 230, 275, 323, 811, 997
Hpy166II GTNNAC 2 cut(s) 577, 629
Hpy188I TCNGA 7 cut(s) 195, 325, 369, 400, 503, 703, 843
Hpy188III TCNNGA 5 cut(s) 52, 74, 708, 752, 1003
Hpy8I GTNNAC 2 cut(s) 577, 629
Hpy99I CGWCG 7 cut(s) 88, 130, 133, 687, 778, 832, 835
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 6 cut(s) 300, 408, 427, 694, 746, 928
HpyCH4IV ACGT 3 cut(s) 128, 605, 830
HpyCH4V TGCA 4 cut(s) 609, 726, 816, 961
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 120
HpyF3I CTNAG 5 cut(s) 99, 177, 194, 225, 918
HpySE526I ACGT 3 cut(s) 128, 605, 830
Hsp92I GRCGYC 4 cut(s) 128, 284, 645, 830
Hsp92II CATG 8 cut(s) 55, 293, 619, 643, 677, 755, 961, 976
HspAI GCGC 1 cut(s) 645
KasI GGCGCC 1 cut(s) 644
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Ksp22I TGATCA 4 cut(s) 520, 618, 636, 892
LmnI GCTCC 6 cut(s) 88, 145, 257, 318, 484, 682
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 2 cut(s) 211, 238
MabI ACCWGGT 1 cut(s) 60
MaeI CTAG 1 cut(s) 768
MaeII ACGT 3 cut(s) 128, 605, 830
MaeIII GTNAC 2 cut(s) 311, 402
MboII GAAGA 6 cut(s) 67, 195, 338, 358, 399, 814
MfeI CAATTG 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 459
MluCI AATT 4 cut(s) 394, 411, 720, 997
MluNI TGGCCA 1 cut(s) 459
Mly113I GGCGCC 1 cut(s) 645
MlyI GAGTC 3 cut(s) 190, 209, 410
MmeI TCCRAC 1 cut(s) 574
MnlI CCTC 9 cut(s) 274, 342, 365, 441, 482, 666, 690, 802, 814
Mox20I TGGCCA 1 cut(s) 459
MroNI GCCGGC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 394
MscI TGGCCA 1 cut(s) 459
MseI TTAA 3 cut(s) 273, 855, 996
MslI CAYNNNNRTG 2 cut(s) 309, 744
Msp20I TGGCCA 1 cut(s) 459
MspI CCGG 7 cut(s) 29, 240, 261, 316, 333, 353, 878
MspR9I CCNGG 3 cut(s) 62, 143, 354
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 949
MvaI CCWGG 2 cut(s) 62, 143
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 29, 120
NaeI GCCGGC 1 cut(s) 30
NarI GGCGCC 1 cut(s) 645
NciI CCSGG 1 cut(s) 354
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 8 cut(s) 55, 293, 619, 643, 677, 755, 961, 976
NlaIV GGNNCC 4 cut(s) 259, 627, 646, 914
NmuCI GTSAC 2 cut(s) 311, 402
NspI RCATGY 1 cut(s) 961
NspV TTCGAA 1 cut(s) 953
PagI TCATGA 2 cut(s) 51, 751
PctI GAATGC 1 cut(s) 949
PdiI GCCGGC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 394
PfeI GAWTC 4 cut(s) 329, 668, 704, 784
PflFI GACNNNGTC 1 cut(s) 829
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 3 cut(s) 189, 208, 409
PluTI GGCGCC 1 cut(s) 648
PmaCI CACGTG 1 cut(s) 606
PmlI CACGTG 1 cut(s) 606
PpsI GAGTC 3 cut(s) 189, 208, 409
Ppu21I YACGTR 1 cut(s) 606
PshBI ATTAAT 1 cut(s) 996
PsiI TTATAA 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 60, 141
PspCI CACGTG 1 cut(s) 606
PspEI GGTNACC 1 cut(s) 311
PspGI CCWGG 2 cut(s) 60, 141
PspN4I GGNNCC 4 cut(s) 259, 627, 646, 914
PspPI GGNCC 2 cut(s) 139, 626
PsrI GAACNNNNNNTAC 2 cut(s) 947, 979
PsyI GACNNNGTC 1 cut(s) 829
RsaI GTAC 5 cut(s) 236, 244, 508, 578, 965
RsaNI GTAC 5 cut(s) 235, 243, 507, 577, 964
RseI CAYNNNNRTG 2 cut(s) 309, 744
SacI GAGCTC 1 cut(s) 323
SaqAI TTAA 3 cut(s) 273, 855, 996
SatI GCNGC 1 cut(s) 115
Sau96I GGNCC 2 cut(s) 139, 626
ScaI AGTACT 2 cut(s) 236, 965
SchI GAGTC 3 cut(s) 190, 209, 410
ScrFI CCNGG 3 cut(s) 62, 143, 354
SduI GDGCHC 1 cut(s) 323
SexAI ACCWGGT 1 cut(s) 60
SfaNI GCATC 2 cut(s) 211, 238
SfoI GGCGCC 1 cut(s) 646
SfuI TTCGAA 1 cut(s) 953
SinI GGWCC 1 cut(s) 626
SmiMI CAYNNNNRTG 2 cut(s) 309, 744
Sse9I AATT 4 cut(s) 394, 411, 720, 997
SsiI CCGC 6 cut(s) 69, 112, 278, 309, 511, 947
SspDI GGCGCC 1 cut(s) 644
SspMI CTAG 1 cut(s) 768
SstI GAGCTC 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 60, 141, 352
StyI CCWWGG 2 cut(s) 488, 789
TaaI ACNGT 6 cut(s) 300, 408, 427, 694, 746, 928
TaiI ACGT 3 cut(s) 131, 608, 833
TaqI TCGA 6 cut(s) 125, 685, 713, 833, 953, 1002
TasI AATT 4 cut(s) 394, 411, 720, 997
TatI WGTACW 3 cut(s) 234, 576, 963
TfiI GAWTC 4 cut(s) 329, 668, 704, 784
Tru1I TTAA 3 cut(s) 273, 855, 996
Tru9I TTAA 3 cut(s) 273, 855, 996
TscAI CASTG 2 cut(s) 30, 181
TseFI GTSAC 2 cut(s) 311, 402
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 2 cut(s) 311, 402
TspDTI ATGAA 3 cut(s) 68, 408, 740
TspGWI ACGGA 2 cut(s) 101, 860
TspRI CASTG 2 cut(s) 30, 181
Tth111I GACNNNGTC 1 cut(s) 829
VpaK11BI GGWCC 1 cut(s) 626
VspI ATTAAT 1 cut(s) 996
XapI RAATTY 1 cut(s) 394
XceI RCATGY 1 cut(s) 961
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 1 cut(s) 768
ZraI GACGTC 2 cut(s) 129, 831
ZrmI AGTACT 2 cut(s) 236, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.