Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009718

Physical Location & Seq

Genomic Coordinates Reverse (-)

3024987 .. 3029011

Gene Structure 4025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGCCACTGGAGATGCCTGAAAGTGATGAGATAATTGATTCCCTTGGACCACAGCATTCTGATGGTACTGCAAATCATACCAAGAGCCCTGCAATTTGTAGTTCTGAATTTGCTCATCAGTTTCCTGCTATAGAGGAAAAGCCTGCCTACAGCATCTCTTGCACCGAAGGATCTGAATCGATAGCTCATGGCATCTCAAATGAACATTCCAACAAGGTTCCAGACGAGCATTTGAAATCTACTACAGATGAAACCTCCGAGCAATTATATGGATGTAAAATCCCAGCTGTCATTCTAGGAGTTCTTGCATGCATCGGCCTTGAACACATTCTTAAACCAGAGACTAAAGAAATTAGTTGTTCTTTGCTCTGGGATGGTTGTGATGCAGAGGACGGCAAGCAAGATTCTGCTAATCATCATGGTTCTCATCACCATCTGTTATTGCCAGAGAAAGGAACTGAACAGAAGGACACGACAGCATCTTCAAAGCTAAATATAGCATCAGATGAGCTCCCTCCTAGTGACAGTAATCACAGTATAACTGACAACAACAAGCTTATATTTTTGAGTCAGGGAAATGCTGGACAGTGTGAAAAGGATCTGTCTCGAGAACCATCGTATGGAACAAGTTCCACAAAGGGATTGCAATTGACTGATGCATCTTCTTGCATTCGACAGAGTTCTGTAGGCAGGGCAACAAGGAAAAGTGTTTCAAAAACATGCAGGTTCTTCTTTCCAGTTGCAAACAAGAATCACTTGGCTTCTGCAATTAGCAAATATAAACCCAGCGTGATCAACAGTGAAGACATCGTGTTCTCAAGTTCTACTGATCAAAGTAAGGGAAGGGAAAACCAGTCAGTCTCTGATGATTTAAAACTGAATCCTGTCTGCTGCTCTGATGAAAAAGACAATTTGCCCCTTGAACTTTGTTTGCCTGATGAGGACAGCTTAATTACAGTGGATGATTTCAGGATTGTGTCCTACAAGGATATGCTTGAGCGAAATGAAACCAAAGCTGATAGGGTAATGCCAAGTGCACCAGTCGATAGTTCTAGGAAGCCGATGGACACGAAAATTGGAATCAAAGATGAAAAATCTACTCATGTCTACAAAAGTGAAGTTCCAGTTTATCAGGGGAAGTCTTCTTACCGTGCTTCACCAGCTCTTATAAATTCTCAAGTGAAAGCCGTTAATCCAAAGTTCAAGCCTCAGAATACATCCAACCGAGCTTTCTCTACAAATGTGCTTCCTACCACTTTCCATCAGTCCCAAGCCAAACCACATCAGCAACTGCAGCAGACACTCTTTACAGAAACGGTTCCAACTCCTTACATGCCGGATCTGTACCATGTCCAAGCTTTTCCCTGGAACTACCAGATGTCAAGTTATGGATGTGTGCCAGTGCCAACTCCAGGGTTTCAGCCCTATGGCGGGACTAATCTTCTTGGAACTCAGAGCAATGCACTGAATGCAGGGACAGGTTATTACCTTGGTTGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

500

Amino Acids

54.82

Weight (kDa)

5.57

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30290 FvH4_7g30290 FvH4_7g30341
malus_domestica	MD01G1208800.v1.1
prunus_persica	Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378421
rosa_laevigata	RLG00000026430 RLG00000026437
rosa_multiflora	Rmu_sc0000938.1_g000003 Rmu_sc0040188.1_g000001 Rmu_sc0041710.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280470
rosa_rugosa	Rorug01G0408600
rosa_samantha	Rh1AG430100 Rh1BG387800 Rh1CG401300 Rh1DG418900
rosa_wichuraiana	Rw1G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1169
Acc36I	ACCTGC	1 cut(s)	714
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	1107
AciI	CCGC	1 cut(s)	1431
AclWI	GGATC	3 cut(s)	178, 606, 1347
AcsI	RAATTY	2 cut(s)	107, 1171
AfaI	GTAC	2 cut(s)	67, 1346
AfiI	CCNNNNNNNGG	5 cut(s)	452, 620, 1412, 1430, 1431
AgsI	TTSAA	6 cut(s)	235, 323, 486, 714, 923, 1204
AjnI	CCWGG	2 cut(s)	1364, 1411
AjuI	GAANNNNNNNTTGG	2 cut(s)	1214, 1246
Alw21I	GWGCWC	2 cut(s)	513, 1039
Alw26I	GTCTC	3 cut(s)	335, 609, 865
Alw44I	GTGCAC	1 cut(s)	1035
AlwI	GGATC	3 cut(s)	178, 606, 1347
AlwNI	CAGNNNCTG	2 cut(s)	863, 1291
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	1 cut(s)	316
ApaLI	GTGCAC	1 cut(s)	1035
ApeKI	GCWGC	2 cut(s)	891, 1294
ApoI	RAATTY	2 cut(s)	107, 1171
Asp700I	GAANNNNTTC	3 cut(s)	327, 628, 1317
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	422, 1149
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	1039
BanII	GRGCYC	2 cut(s)	89, 513
BarI	GAAGNNNNNNTAC	2 cut(s)	1130, 1162
BbsI	GAAGAC	2 cut(s)	810, 1134
Bbv12I	GWGCWC	2 cut(s)	513, 1039
BbvI	GCAGC	2 cut(s)	878, 1306
BccI	CCATC	6 cut(s)	56, 368, 441, 622, 1057, 1269
BceAI	ACGGC	2 cut(s)	409, 1172
BciT130I	CCWGG	2 cut(s)	1366, 1413
BclI	TGATCA	2 cut(s)	792, 829
BcoDI	GTCTC	3 cut(s)	335, 609, 865
BfaI	CTAG	3 cut(s)	296, 519, 1053
BfmI	CTRYAG	5 cut(s)	129, 148, 243, 684, 1292
BfuAI	ACCTGC	1 cut(s)	714
BisI	GCNGC	2 cut(s)	892, 1295
BlsI	GCNGC	2 cut(s)	893, 1296
Bme1390I	CCNGG	2 cut(s)	1366, 1413
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	219, 1320
BmrFI	CCNGG	2 cut(s)	1366, 1413
BmsI	GCATC	9 cut(s)	3, 162, 201, 321, 373, 488, 509, 646, 668
BpiI	GAAGAC	2 cut(s)	810, 1134
BpmI	CTGGAG	2 cut(s)	29, 1395
BpuEI	CTTGAG	3 cut(s)	802, 1016, 1161
Bsa29I	ATCGAT	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	175
BsaJI	CCNNGG	4 cut(s)	43, 1364, 1412, 1489
Bsc4I	CCNNNNNNNGG	5 cut(s)	452, 620, 1412, 1430, 1431
Bse1I	ACTGG	6 cut(s)	12, 737, 853, 1040, 1124, 1400
Bse3DI	GCAATG	1 cut(s)	1465
Bse8I	GATNNNNATC	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	1366, 1413
BseCI	ATCGAT	1 cut(s)	179
BseDI	CCNNGG	4 cut(s)	43, 1364, 1412, 1489
BseGI	GGATG	5 cut(s)	278, 379, 967, 1217, 1397
BseJI	GATNNNNATC	1 cut(s)	175
BseLI	CCNNNNNNNGG	5 cut(s)	452, 620, 1412, 1430, 1431
BseMI	GCAATG	1 cut(s)	1465
BseMII	CTCAG	2 cut(s)	1223, 1466
BseNI	ACTGG	6 cut(s)	12, 737, 853, 1040, 1124, 1400
BseSI	GKGCMC	1 cut(s)	1039
BseXI	GCAGC	2 cut(s)	878, 1306
BseYI	CCCAGC	2 cut(s)	283, 785
BshFI	GGCC	1 cut(s)	318
BshVI	ATCGAT	1 cut(s)	179
BsiHKAI	GWGCWC	2 cut(s)	513, 1039
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	1337
BslFI	GGGAC	3 cut(s)	1252, 1447, 1489
BslI	CCNNNNNNNGG	5 cut(s)	452, 620, 1412, 1430, 1431
BsmAI	GTCTC	3 cut(s)	335, 609, 865
BsmFI	GGGAC	3 cut(s)	1252, 1447, 1489
BsmI	GAATGC	3 cut(s)	55, 669, 1474
BsnI	GGCC	1 cut(s)	318
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	3 cut(s)	89, 513, 1039
Bsp143I	GATC	5 cut(s)	170, 598, 792, 829, 1339
BspACI	CCGC	1 cut(s)	1431
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	1222, 1465
BspDI	ATCGAT	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	219, 1320
BspMAI	CTGCAG	1 cut(s)	1296
BspMI	ACCTGC	1 cut(s)	714
BspPI	GGATC	3 cut(s)	178, 606, 1347
BsrDI	GCAATG	1 cut(s)	1465
BsrI	ACTGG	6 cut(s)	12, 737, 853, 1040, 1124, 1400
BssECI	CCNNGG	4 cut(s)	43, 1364, 1412, 1489
BssMI	GATC	5 cut(s)	170, 598, 792, 829, 1339
BssT1I	CCWWGG	2 cut(s)	43, 1489
Bst2UI	CCWGG	2 cut(s)	1366, 1413
Bst4CI	ACNGT	7 cut(s)	527, 536, 588, 800, 958, 1151, 1318
BstAPI	GCANNNNNTGC	2 cut(s)	159, 1469
BstC8I	GCNNGC	3 cut(s)	144, 310, 398
BstDEI	CTNAG	2 cut(s)	1209, 1452
BstF5I	GGATG	5 cut(s)	278, 379, 967, 1217, 1397
BstKTI	GATC	5 cut(s)	173, 601, 795, 832, 1342
BstMAI	GTCTC	3 cut(s)	335, 609, 865
BstMBI	GATC	5 cut(s)	170, 598, 792, 829, 1339
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 1160, 1294, 1469
BstNI	CCWGG	2 cut(s)	1366, 1413
BstNSI	RCATGY	3 cut(s)	312, 723, 1336
BstSCI	CCNGG	2 cut(s)	1364, 1411
BstSFI	CTRYAG	5 cut(s)	129, 148, 243, 684, 1292
BstSLI	GKGCMC	1 cut(s)	1039
BstV1I	GCAGC	2 cut(s)	878, 1306
BstV2I	GAAGAC	2 cut(s)	810, 1134
BstX2I	RGATCY	3 cut(s)	170, 598, 1339
BstYI	RGATCY	3 cut(s)	170, 598, 1339
Bsu15I	ATCGAT	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	318
BsuTUI	ATCGAT	1 cut(s)	179
BtsCI	GGATG	5 cut(s)	278, 379, 967, 1217, 1397
BtsIMutI	CAGTG	6 cut(s)	5, 593, 805, 963, 1407, 1463
BveI	ACCTGC	1 cut(s)	714
Cac8I	GCNNGC	3 cut(s)	144, 310, 398
CaiI	CAGNNNCTG	2 cut(s)	863, 1291
Cfr13I	GGNCC	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	66, 1345
CviAII	CATG	7 cut(s)	188, 309, 419, 720, 1103, 1333, 1349
CviQI	GTAC	2 cut(s)	66, 1345
DdeI	CTNAG	2 cut(s)	1209, 1452
DpnI	GATC	5 cut(s)	172, 600, 794, 831, 1341
DpnII	GATC	5 cut(s)	170, 598, 792, 829, 1339
DraI	TTTAAA	1 cut(s)	873
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	2 cut(s)	43, 1489
Eco24I	GRGCYC	2 cut(s)	89, 513
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	511
EcoRII	CCWGG	2 cut(s)	1364, 1411
EcoT14I	CCWWGG	2 cut(s)	43, 1489
EcoT22I	ATGCAT	2 cut(s)	314, 661
EcoT38I	GRGCYC	2 cut(s)	89, 513
ErhI	CCWWGG	2 cut(s)	43, 1489
FaeI	CATG	7 cut(s)	191, 312, 422, 723, 1106, 1336, 1352
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FaqI	GGGAC	3 cut(s)	1252, 1447, 1489
FatI	CATG	7 cut(s)	187, 308, 418, 719, 1102, 1332, 1348
FauI	CCCGC	1 cut(s)	1424
FbaI	TGATCA	2 cut(s)	792, 829
FblI	GTMKAC	1 cut(s)	1107
Fnu4HI	GCNGC	2 cut(s)	892, 1295
FokI	GGATG	5 cut(s)	285, 386, 974, 1204, 1404
FriOI	GRGCYC	2 cut(s)	89, 513
Fsp4HI	GCNGC	2 cut(s)	892, 1295
FspBI	CTAG	3 cut(s)	296, 519, 1053
GluI	GCNGC	2 cut(s)	892, 1295
GsaI	CCCAGC	2 cut(s)	287, 789
GsuI	CTGGAG	2 cut(s)	29, 1395
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	1337
Hin1II	CATG	7 cut(s)	191, 312, 422, 723, 1106, 1336, 1352
HindIII	AAGCTT	2 cut(s)	554, 1356
HinfI	GANTC	7 cut(s)	38, 176, 404, 568, 751, 880, 1080
HpaII	CCGG	1 cut(s)	1337
HphI	GGTGA	2 cut(s)	422, 1149
Hpy166II	GTNNAC	2 cut(s)	1037, 1108
Hpy188I	TCNGA	9 cut(s)	61, 106, 175, 259, 505, 865, 898, 1212, 1455
Hpy188III	TCNNGA	4 cut(s)	221, 606, 608, 970
Hpy8I	GTNNAC	2 cut(s)	1037, 1108
HpyAV	CCTTC	3 cut(s)	161, 460, 837
HpyCH4III	ACNGT	7 cut(s)	527, 536, 588, 800, 958, 1151, 1318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 1160, 1294, 1469
HpyF3I	CTNAG	2 cut(s)	1209, 1452
Hsp92II	CATG	7 cut(s)	191, 312, 422, 723, 1106, 1336, 1352
Ksp22I	TGATCA	2 cut(s)	792, 829
Kzo9I	GATC	5 cut(s)	170, 598, 792, 829, 1339
LmnI	GCTCC	1 cut(s)	516
Lsp1109I	GCAGC	2 cut(s)	878, 1306
LweI	GCATC	9 cut(s)	3, 162, 201, 321, 373, 488, 509, 646, 668
MaeI	CTAG	3 cut(s)	296, 519, 1053
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	5 cut(s)	172, 600, 794, 831, 1341
MboI	GATC	5 cut(s)	170, 598, 792, 829, 1339
MboII	GAAGA	6 cut(s)	474, 654, 721, 815, 1134, 1433
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	3 cut(s)	170, 598, 1339
MhlI	GDGCHC	3 cut(s)	89, 513, 1039
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	3 cut(s)	234, 1245, 1346
MnlI	CCTC	6 cut(s)	127, 265, 382, 525, 934, 1218
Mph1103I	ATGCAT	2 cut(s)	314, 661
MroXI	GAANNNNTTC	3 cut(s)	327, 628, 1317
MseI	TTAA	4 cut(s)	333, 872, 950, 1191
MslI	CAYNNNNRTG	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	1 cut(s)	1337
MspR9I	CCNGG	2 cut(s)	1366, 1413
MunI	CAATTG	1 cut(s)	647
Mva1269I	GAATGC	3 cut(s)	55, 669, 1474
MvaI	CCWGG	2 cut(s)	1366, 1413
MwoI	GCNNNNNNNGC	4 cut(s)	159, 1160, 1294, 1469
NdeII	GATC	5 cut(s)	170, 598, 792, 829, 1339
NlaIII	CATG	7 cut(s)	191, 312, 422, 723, 1106, 1336, 1352
NlaIV	GGNNCC	2 cut(s)	219, 1320
NmuCI	GTSAC	1 cut(s)	521
NsiI	ATGCAT	2 cut(s)	314, 661
NspI	RCATGY	3 cut(s)	312, 723, 1336
PaeI	GCATGC	1 cut(s)	312
PaeR7I	CTCGAG	1 cut(s)	606
PctI	GAATGC	3 cut(s)	55, 669, 1474
PdmI	GAANNNNTTC	3 cut(s)	327, 628, 1317
PfeI	GAWTC	6 cut(s)	38, 176, 404, 751, 880, 1080
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	2 cut(s)	893, 1296
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	1169
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	1364, 1411
PspFI	CCCAGC	2 cut(s)	283, 785
PspGI	CCWGG	2 cut(s)	1364, 1411
PspN4I	GGNNCC	2 cut(s)	219, 1320
PspPI	GGNCC	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	1296
PstNI	CAGNNNCTG	2 cut(s)	863, 1291
PsuI	RGATCY	3 cut(s)	170, 598, 1339
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	2 cut(s)	67, 1346
RsaNI	GTAC	2 cut(s)	66, 1345
RseI	CAYNNNNRTG	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	4 cut(s)	333, 872, 950, 1191
SatI	GCNGC	2 cut(s)	892, 1295
Sau3AI	GATC	5 cut(s)	170, 598, 792, 829, 1339
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	2 cut(s)	1366, 1413
SduI	GDGCHC	3 cut(s)	89, 513, 1039
SfaNI	GCATC	9 cut(s)	3, 162, 201, 321, 373, 488, 509, 646, 668
SfcI	CTRYAG	5 cut(s)	129, 148, 243, 684, 1292
Sfr274I	CTCGAG	1 cut(s)	606
SinI	GGWCC	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	4 cut(s)	606, 817, 995, 1176
SmoI	CTYRAG	4 cut(s)	606, 817, 995, 1176
SphI	GCATGC	1 cut(s)	312
SsiI	CCGC	1 cut(s)	1431
SspMI	CTAG	3 cut(s)	296, 519, 1053
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	1364, 1411
StyI	CCWWGG	2 cut(s)	43, 1489
TaaI	ACNGT	7 cut(s)	527, 536, 588, 800, 958, 1151, 1318
TaqI	TCGA	4 cut(s)	179, 607, 673, 1044
TfiI	GAWTC	6 cut(s)	38, 176, 404, 751, 880, 1080
Tru1I	TTAA	4 cut(s)	333, 872, 950, 1191
Tru9I	TTAA	4 cut(s)	333, 872, 950, 1191
TscAI	CASTG	6 cut(s)	12, 593, 805, 963, 1407, 1470
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	2 cut(s)	891, 1294
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	5 cut(s)	216, 264, 915, 1020, 1104
TspRI	CASTG	6 cut(s)	12, 593, 805, 963, 1407, 1470
Van91I	CCANNNNNTGG	1 cut(s)	620
VneI	GTGCAC	1 cut(s)	1035
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	2 cut(s)	107, 1171
XceI	RCATGY	3 cut(s)	312, 723, 1336
XhoI	CTCGAG	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	1107
XmnI	GAANNNNTTC	3 cut(s)	327, 628, 1317
XspI	CTAG	3 cut(s)	296, 519, 1053
Zsp2I	ATGCAT	2 cut(s)	314, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.