Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040188.1

Orthogroup ID

OG0009718

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2417

Gene Structure 2416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1289 bp

atgacggttttctccggcgaaatgagctcggaaagcgacgatcggagtgttcttgctccgtcggaaacgaacgcacaaggactctccaatgaacttgattttcgattggactggccattgcaagcttcttctgaatcagattgtgagaggtgtcatgagaacctacataaaggtctgctcagttctgagaatgttggacttctgggacctggttctttactgggagtccatggtgacattgctgatgcttctcctcccaaggttgaagaaagtattcttcctctactccataagagcaaagaaccatatcggcctccacgcctttttaaggcagattggaatgattataaggacgaagtatgggtttctcctgagcatctgagtaaaagtgaaggacagaagcaaaactggagacgagattttcctgaggtgatgagggaaggacagaaggaagcattccaagataagcagaagaaaaattcaaatgagcatgacgaaaatgtgaaatttatcatgccactggagatgcctgaaagtgatgagataattgattcccttggaccacagcattctgatagtatcgcaaatcataccaacagccctgcaatttgtggttctgaatttgctcatcagtttcctgctatagaggaaaagcctgcctactgcatctcttgcaccgaaggatctgaatcgatagcttatggcatctcaaatgaacattccaacaaggttccagacgagcatttgaaatctactacagatgaaacctccgagcaattatatggatgtaaaatcccagctgtcattctaggagttcttgcatgcatcggccttgaacacattcttaaaccagagactaaagaaattagttgttctttgctctgggatggttgtgatgcagaggacggcaagcaagattctgctaatcatcatggttctcatcaccatctgttattgccagagaaaggcactgaacagaaggacacgacagcatcttcaaagctaaatatagcatcagatgagctccctcctagtgacagtataactgacaacaacaagcttatatttttgagtcagggaaatgctggacagtgtgaaaaggatctgtctcgagaaccatcgtatggaacaagttccacaaagggattgcagttgactgattcatcttcttgcattcgacagagttctgtaggcagggcaacaaggaagagtgtttcaaaaacatgcaggttcttctttccagttgcaaacaagaatcacttggcttctgcaattagcaaatataaacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

430

Amino Acids

47.42

Weight (kDa)

5.17

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30290 FvH4_7g30290 FvH4_7g30341
malus_domestica	MD01G1208800.v1.1
prunus_persica	Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1 Prupe.2G301400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378421
rosa_laevigata	RLG00000026430 RLG00000026437
rosa_multiflora	Rmu_sc0000938.1_g000003 Rmu_sc0040188.1_g000001 Rmu_sc0041710.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280470
rosa_rugosa	Rorug01G0408600
rosa_samantha	Rh1AG430100 Rh1BG387800 Rh1CG401300 Rh1DG418900
rosa_wichuraiana	Rw1G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
Acc36I	ACCTGC	1 cut(s)	1218
AccB7I	CCANNNNNTGG	1 cut(s)	1124
AclWI	GGATC	2 cut(s)	691, 1110
AcoI	YGGCCR	1 cut(s)	113
AcsI	RAATTY	3 cut(s)	478, 506, 620
AfiI	CCNNNNNNNGG	3 cut(s)	328, 965, 1124
AgsI	TTSAA	6 cut(s)	266, 483, 748, 836, 999, 1218
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	7 cut(s)	27, 125, 698, 800, 1003, 1024, 1060
AluI	AGCT	7 cut(s)	27, 125, 698, 800, 1003, 1024, 1060
Alw21I	GWGCWC	2 cut(s)	29, 1026
Alw26I	GTCTC	3 cut(s)	406, 848, 1113
AlwI	GGATC	2 cut(s)	691, 1110
Ama87I	CYCGRG	1 cut(s)	1110
AoxI	GGCC	3 cut(s)	113, 311, 829
ApoI	RAATTY	3 cut(s)	478, 506, 620
Asp700I	GAANNNNTTC	3 cut(s)	273, 840, 1132
AspS9I	GGNCC	2 cut(s)	206, 560
AsuHPI	GGTGA	3 cut(s)	245, 442, 935
AvaI	CYCGRG	1 cut(s)	1110
AvaII	GGWCC	2 cut(s)	206, 560
AxyI	CCTNAGG	1 cut(s)	426
BalI	TGGCCA	1 cut(s)	115
BanII	GRGCYC	2 cut(s)	29, 1026
Bbv12I	GWGCWC	2 cut(s)	29, 1026
BccI	CCATC	3 cut(s)	881, 954, 1126
BceAI	ACGGC	1 cut(s)	922
BciT130I	CCWGG	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	406, 848, 1113
BfaI	CTAG	2 cut(s)	809, 1032
BfmI	CTRYAG	3 cut(s)	642, 756, 1188
BfuAI	ACCTGC	1 cut(s)	1218
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	2 cut(s)	206, 560
BmeT110I	CYCGRG	1 cut(s)	1110
BmgT120I	GGNCC	2 cut(s)	206, 560
BmiI	GGNNCC	2 cut(s)	207, 732
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	9 cut(s)	235, 385, 516, 675, 714, 834, 886, 1001, 1022
BmuI	ACTGGG	1 cut(s)	230
BpmI	CTGGAG	2 cut(s)	430, 542
Bpu10I	CCTNAGC	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	692
BsaBI	GATNNNNATC	1 cut(s)	688
BsaJI	CCNNGG	3 cut(s)	229, 258, 556
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 965, 1124
Bse1I	ACTGG	5 cut(s)	116, 225, 413, 525, 1241
Bse21I	CCTNAGG	1 cut(s)	426
Bse3DI	GCAATG	2 cut(s)	116, 237
Bse8I	GATNNNNATC	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	692
BseDI	CCNNGG	3 cut(s)	229, 258, 556
BseGI	GGATG	2 cut(s)	791, 892
BseJI	GATNNNNATC	1 cut(s)	688
BseLI	CCNNNNNNNGG	3 cut(s)	328, 965, 1124
BseMI	GCAATG	2 cut(s)	116, 237
BseMII	CTCAG	5 cut(s)	177, 193, 363, 371, 417
BseNI	ACTGG	5 cut(s)	116, 225, 413, 525, 1241
BseRI	GAGGAG	1 cut(s)	243
BseYI	CCCAGC	1 cut(s)	796
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	3 cut(s)	115, 313, 831
BshVI	ATCGAT	1 cut(s)	692
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	29, 1026
BsiHKCI	CYCGRG	1 cut(s)	1110
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	3 cut(s)	328, 965, 1124
BsmAI	GTCTC	3 cut(s)	406, 848, 1113
BsmBI	CGTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	3 cut(s)	455, 568, 1173
BsnI	GGCC	3 cut(s)	115, 313, 831
BsoBI	CYCGRG	1 cut(s)	1110
Bsp1286I	GDGCHC	2 cut(s)	29, 1026
Bsp143I	GATC	3 cut(s)	40, 683, 1102
Bsp19I	CCATGG	1 cut(s)	229
BspANI	GGCC	3 cut(s)	115, 313, 831
BspCNI	CTCAG	5 cut(s)	178, 192, 364, 372, 418
BspDI	ATCGAT	1 cut(s)	692
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	207, 732
BspMI	ACCTGC	1 cut(s)	1218
BspPI	GGATC	2 cut(s)	691, 1110
BsrDI	GCAATG	2 cut(s)	116, 237
BsrI	ACTGG	5 cut(s)	116, 225, 413, 525, 1241
BssECI	CCNNGG	3 cut(s)	229, 258, 556
BssMI	GATC	3 cut(s)	40, 683, 1102
BssT1I	CCWWGG	3 cut(s)	229, 258, 556
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	7, 1040, 1092
Bst6I	CTCTTC	1 cut(s)	1202
BstAPI	GCANNNNNTGC	1 cut(s)	672
BstC8I	GCNNGC	4 cut(s)	123, 657, 823, 911
BstDEI	CTNAG	5 cut(s)	179, 186, 372, 380, 426
BstDSI	CCRYGG	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	791, 892
BstKTI	GATC	3 cut(s)	43, 686, 1105
BstMAI	GTCTC	3 cut(s)	406, 848, 1113
BstMBI	GATC	3 cut(s)	40, 683, 1102
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 33, 672
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	2 cut(s)	825, 1227
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	3 cut(s)	642, 756, 1188
BstX2I	RGATCY	2 cut(s)	683, 1102
BstYI	RGATCY	2 cut(s)	683, 1102
Bsu15I	ATCGAT	1 cut(s)	692
Bsu36I	CCTNAGG	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	115, 313, 831
BsuTUI	ATCGAT	1 cut(s)	692
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	791, 892
BtsIMutI	CAGTG	3 cut(s)	518, 969, 1097
BveI	ACCTGC	1 cut(s)	1218
Cac8I	GCNNGC	4 cut(s)	123, 657, 823, 911
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	206, 560
ClaI	ATCGAT	1 cut(s)	692
CsiI	ACCWGGT	1 cut(s)	208
CviAII	CATG	7 cut(s)	155, 230, 491, 514, 822, 932, 1224
DdeI	CTNAG	5 cut(s)	179, 186, 372, 380, 426
DpnI	GATC	3 cut(s)	42, 685, 1104
DpnII	GATC	3 cut(s)	40, 683, 1102
EaeI	YGGCCR	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	1202
EarI	CTCTTC	1 cut(s)	1202
Ecl136II	GAGCTC	2 cut(s)	27, 1024
Eco130I	CCWWGG	3 cut(s)	229, 258, 556
Eco24I	GRGCYC	2 cut(s)	29, 1026
Eco47I	GGWCC	2 cut(s)	206, 560
Eco53kI	GAGCTC	2 cut(s)	27, 1024
Eco81I	CCTNAGG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	1110
EcoICRI	GAGCTC	2 cut(s)	27, 1024
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	3 cut(s)	229, 258, 556
EcoT22I	ATGCAT	1 cut(s)	827
EcoT38I	GRGCYC	2 cut(s)	29, 1026
ErhI	CCWWGG	3 cut(s)	229, 258, 556
Esp3I	CGTCTC	1 cut(s)	406
FaeI	CATG	7 cut(s)	158, 233, 494, 517, 825, 935, 1227
FalI	AAGNNNNNCTT	2 cut(s)	1244, 1276
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	7 cut(s)	154, 229, 490, 513, 821, 931, 1223
FokI	GGATG	2 cut(s)	798, 899
FriOI	GRGCYC	2 cut(s)	29, 1026
FspBI	CTAG	2 cut(s)	809, 1032
GsaI	CCCAGC	1 cut(s)	800
GsuI	CTGGAG	2 cut(s)	430, 542
HaeIII	GGCC	3 cut(s)	115, 313, 831
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	7 cut(s)	158, 233, 494, 517, 825, 935, 1227
HincII	GTYRAC	1 cut(s)	1155
HindII	GTYRAC	1 cut(s)	1155
HindIII	AAGCTT	2 cut(s)	123, 1058
HinfI	GANTC	9 cut(s)	81, 134, 225, 551, 689, 917, 1072, 1160, 1255
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	3 cut(s)	245, 442, 935
Hpy166II	GTNNAC	1 cut(s)	1155
Hpy188III	TCNNGA	6 cut(s)	155, 371, 425, 734, 1110, 1112
Hpy8I	GTNNAC	1 cut(s)	1155
Hpy99I	CGWCG	2 cut(s)	41, 64
HpyAV	CCTTC	5 cut(s)	386, 434, 442, 674, 973
HpyCH4III	ACNGT	3 cut(s)	7, 1040, 1092
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 33, 672
HpyF3I	CTNAG	5 cut(s)	179, 186, 372, 380, 426
Hsp92II	CATG	7 cut(s)	158, 233, 494, 517, 825, 935, 1227
Kzo9I	GATC	3 cut(s)	40, 683, 1102
LmnI	GCTCC	2 cut(s)	61, 1029
LweI	GCATC	9 cut(s)	235, 385, 516, 675, 714, 834, 886, 1001, 1022
MabI	ACCWGGT	1 cut(s)	208
MaeI	CTAG	2 cut(s)	809, 1032
MaeIII	GTNAC	2 cut(s)	233, 1034
MalI	GATC	3 cut(s)	42, 685, 1104
MboI	GATC	3 cut(s)	40, 683, 1102
MboII	GAAGA	8 cut(s)	120, 269, 278, 484, 987, 1158, 1219, 1225
MflI	RGATCY	2 cut(s)	683, 1102
MhlI	GDGCHC	2 cut(s)	29, 1026
MlsI	TGGCCA	1 cut(s)	115
MluCI	AATT	8 cut(s)	478, 506, 546, 606, 620, 776, 864, 1272
MluNI	TGGCCA	1 cut(s)	115
MlyI	GAGTC	3 cut(s)	75, 234, 1081
MmeI	TCCRAC	3 cut(s)	42, 175, 747
Mox20I	TGGCCA	1 cut(s)	115
Mph1103I	ATGCAT	1 cut(s)	827
MroXI	GAANNNNTTC	3 cut(s)	273, 840, 1132
MscI	TGGCCA	1 cut(s)	115
MseI	TTAA	2 cut(s)	327, 846
Msp20I	TGGCCA	1 cut(s)	115
MspA1I	CMGCKG	1 cut(s)	800
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	210
Mva1269I	GAATGC	3 cut(s)	455, 568, 1173
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	24, 33, 672
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	3 cut(s)	40, 683, 1102
NlaIII	CATG	7 cut(s)	158, 233, 494, 517, 825, 935, 1227
NlaIV	GGNNCC	2 cut(s)	207, 732
NmuCI	GTSAC	2 cut(s)	233, 1034
NsiI	ATGCAT	1 cut(s)	827
NspI	RCATGY	2 cut(s)	825, 1227
PaeI	GCATGC	1 cut(s)	825
PaeR7I	CTCGAG	1 cut(s)	1110
PagI	TCATGA	1 cut(s)	154
PctI	GAATGC	3 cut(s)	455, 568, 1173
PdmI	GAANNNNTTC	3 cut(s)	273, 840, 1132
PfeI	GAWTC	6 cut(s)	134, 551, 689, 917, 1160, 1255
PflMI	CCANNNNNTGG	1 cut(s)	1124
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	3 cut(s)	75, 233, 1080
PpsI	GAGTC	3 cut(s)	75, 233, 1080
PpuMI	RGGWCCY	1 cut(s)	206
PsiI	TTATAA	1 cut(s)	348
Psp124BI	GAGCTC	2 cut(s)	29, 1026
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	796
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	207, 732
PspPI	GGNCC	2 cut(s)	206, 560
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	683, 1102
PvuI	CGATCG	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	800
SacI	GAGCTC	2 cut(s)	29, 1026
SaqAI	TTAA	2 cut(s)	327, 846
Sau3AI	GATC	3 cut(s)	40, 683, 1102
Sau96I	GGNCC	2 cut(s)	206, 560
SchI	GAGTC	3 cut(s)	75, 234, 1081
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	29, 1026
SexAI	ACCWGGT	1 cut(s)	208
SfaNI	GCATC	9 cut(s)	235, 385, 516, 675, 714, 834, 886, 1001, 1022
SfcI	CTRYAG	3 cut(s)	642, 756, 1188
Sfr274I	CTCGAG	1 cut(s)	1110
SinI	GGWCC	2 cut(s)	206, 560
SlaI	CTCGAG	1 cut(s)	1110
SmlI	CTYRAG	1 cut(s)	1110
SmoI	CTYRAG	1 cut(s)	1110
SphI	GCATGC	1 cut(s)	825
Sse9I	AATT	8 cut(s)	478, 506, 546, 606, 620, 776, 864, 1272
SspMI	CTAG	2 cut(s)	809, 1032
SstI	GAGCTC	2 cut(s)	29, 1026
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	3 cut(s)	229, 258, 556
TaaI	ACNGT	3 cut(s)	7, 1040, 1092
TaqI	TCGA	4 cut(s)	103, 692, 1111, 1177
TasI	AATT	8 cut(s)	478, 506, 546, 606, 620, 776, 864, 1272
TfiI	GAWTC	6 cut(s)	134, 551, 689, 917, 1160, 1255
Tru1I	TTAA	2 cut(s)	327, 846
Tru9I	TTAA	2 cut(s)	327, 846
TscAI	CASTG	3 cut(s)	525, 976, 1097
TseFI	GTSAC	2 cut(s)	233, 1034
Tsp45I	GTSAC	2 cut(s)	233, 1034
TspDTI	ATGAA	4 cut(s)	105, 729, 777, 1152
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	3 cut(s)	525, 976, 1097
Van91I	CCANNNNNTGG	1 cut(s)	1124
VpaK11BI	GGWCC	2 cut(s)	206, 560
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	3 cut(s)	478, 506, 620
XceI	RCATGY	2 cut(s)	825, 1227
XhoI	CTCGAG	1 cut(s)	1110
XmnI	GAANNNNTTC	3 cut(s)	273, 840, 1132
XspI	CTAG	2 cut(s)	809, 1032
Zsp2I	ATGCAT	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.