FvH4_7g30560

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017720
Physical Location & Seq
Reverse (-)
22228456 .. 22229579
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30560.t1

Sequence Viewer

Length: 642 bp
ATGGCAGAGAGGAATCAAGAAGCTTACCCTTTCGCACCATACGCTAATGGCCAAGCCATGGCTAGAAGCGATGCAGAATCTTCAAGAGCTCACTCCGATCATGAGCTACGAAAAAAGAAGCGCATCAAATGTCTAATCTACATCGCCGTCTTCGCTGTGTTCCAGATCATAGTCATAACCGTCTTCGCGCTCACCGTCATGAAAATCAAGAGCCCCAAGTTCCGTATCAAATCCATCACGGTTCAGGACCTCACCACCTCAAACAGTGCTAACCCTTCGCTTTCTATGAGTTTCGTCGCTGAAGTTTCTGTCAAGAACCCTAATTTCGGGCGGTACAAGTATGATCAGACCTCCATTAGCTTCATTTACGAGGGCACTCAAGTTGGGGACGCTGTTGTTCCTAAGGCAACGGCTAGGACTAAAGCGACCAGGAAGGAGATCGTGTCCGGCGCTGTGAAAACCGTTAATTCGAACTTGGCCAGTGATATAAGTGCAGGGTCTGTGACGCTAAGCACGTACTCGAAGATAAACGGGAAGGTTTACTTGATGAACATGATCAAGAAGAAGAAGTCAGCTGAGATGAAATGCACCATGGTCGTTCATTTGTCAAGTAAACAAGTCCAGGATATCAAATGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

214

Amino Acids

23.54

Weight (kDa)

9.88

Isoelectric Point (pI)

26.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 102 - 197 4.3e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017720)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30560
malus_domestica MD07G1281500.v1.1
rosa_chinensis RchiOBHm_Chr1g0379401
rosa_laevigata RLG00000009300 RLG00000026401
rosa_multiflora Rmu_co8197020.1_g000001 Rmu_sc0006761.1_g000011
rosa_roxburghii Rroxscaffold_4G00280190 Rroxscaffold_5G00373460
rosa_rugosa Rorug01G0411900
rosa_samantha Rh1AG434500
rosa_wichuraiana Rw1G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 58
AccII CGCG 1 cut(s) 188
AciI CCGC 1 cut(s) 331
AcoI YGGCCR 2 cut(s) 49, 477
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 2 cut(s) 335, 518
AfiI CCNNNNNNNGG 2 cut(s) 58, 326
AgsI TTSAA 1 cut(s) 84
AjnI CCWGG 2 cut(s) 428, 621
AluBI AGCT 5 cut(s) 23, 89, 106, 360, 575
AluI AGCT 5 cut(s) 23, 89, 106, 360, 575
Alw21I GWGCWC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 500
AoxI GGCC 2 cut(s) 49, 477
AspLEI GCGC 3 cut(s) 123, 190, 452
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 184, 244
AsuII TTCGAA 1 cut(s) 470
AvaII GGWCC 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 377
BalI TGGCCA 2 cut(s) 51, 479
BanII GRGCYC 2 cut(s) 91, 215
BbsI GAAGAC 2 cut(s) 142, 175
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 1 cut(s) 242
BceAI ACGGC 2 cut(s) 131, 426
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 2 cut(s) 430, 623
BclI TGATCA 2 cut(s) 343, 555
BfaI CTAG 2 cut(s) 63, 414
BfoI RGCGCY 1 cut(s) 453
BlpI GCTNAGC 1 cut(s) 509
Bme1390I CCNGG 2 cut(s) 430, 623
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmrFI CCNGG 2 cut(s) 430, 623
BmsI GCATC 2 cut(s) 61, 132
BpiI GAAGAC 2 cut(s) 142, 175
Bpu1102I GCTNAGC 1 cut(s) 509
Bpu14I TTCGAA 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 57, 591
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 326
Bse1I ACTGG 1 cut(s) 480
Bse21I CCTNAGG 1 cut(s) 402
BseBI CCWGG 2 cut(s) 430, 623
BseDI CCNNGG 2 cut(s) 57, 591
BseLI CCNNNNNNNGG 2 cut(s) 58, 326
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 1 cut(s) 480
BseSI GKGCMC 1 cut(s) 377
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 2 cut(s) 51, 479
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 58, 326
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 2 cut(s) 51, 479
Bsp119I TTCGAA 1 cut(s) 470
Bsp1286I GDGCHC 3 cut(s) 91, 215, 377
Bsp143I GATC 5 cut(s) 97, 165, 343, 438, 555
Bsp1720I GCTNAGC 1 cut(s) 509
Bsp19I CCATGG 2 cut(s) 57, 591
BspACI CCGC 1 cut(s) 331
BspANI GGCC 2 cut(s) 51, 479
BspCNI CTCAG 1 cut(s) 568
BspFNI CGCG 1 cut(s) 188
BspHI TCATGA 2 cut(s) 100, 198
BspT104I TTCGAA 1 cut(s) 470
BsrI ACTGG 1 cut(s) 480
BssECI CCNNGG 2 cut(s) 57, 591
BssMI GATC 5 cut(s) 97, 165, 343, 438, 555
BssT1I CCWWGG 2 cut(s) 57, 591
Bst2UI CCWGG 2 cut(s) 430, 623
Bst4CI ACNGT 5 cut(s) 181, 196, 241, 266, 463
BstBAI YACGTR 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 470
BstDEI CTNAG 3 cut(s) 402, 509, 576
BstDSI CCRYGG 2 cut(s) 57, 591
BstFNI CGCG 1 cut(s) 188
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 3 cut(s) 123, 190, 452
BstKTI GATC 5 cut(s) 100, 168, 346, 441, 558
BstMBI GATC 5 cut(s) 97, 165, 343, 438, 555
BstMWI GCNNNNNNNGC 2 cut(s) 41, 152
BstNI CCWGG 2 cut(s) 430, 623
BstSCI CCNGG 2 cut(s) 428, 621
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 1 cut(s) 188
BstV2I GAAGAC 2 cut(s) 142, 175
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 2 cut(s) 51, 479
BtgI CCRYGG 2 cut(s) 57, 591
BtgZI GCGATG 2 cut(s) 84, 127
BtsIMutI CAGTG 2 cut(s) 271, 487
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 2 cut(s) 100, 198
CfoI GCGC 3 cut(s) 123, 190, 452
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 2 cut(s) 398, 514
Csp6I GTAC 2 cut(s) 334, 517
CviAII CATG 5 cut(s) 58, 101, 199, 553, 592
CviQI GTAC 2 cut(s) 334, 517
DdeI CTNAG 3 cut(s) 402, 509, 576
DpnI GATC 5 cut(s) 99, 167, 345, 440, 557
DpnII GATC 5 cut(s) 97, 165, 343, 438, 555
EaeI YGGCCR 2 cut(s) 49, 477
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 2 cut(s) 57, 591
Eco24I GRGCYC 2 cut(s) 91, 215
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 321
Eco81I CCTNAGG 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 428, 621
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 2 cut(s) 57, 591
EcoT38I GRGCYC 2 cut(s) 91, 215
ErhI CCWWGG 2 cut(s) 57, 591
FaeI CATG 5 cut(s) 61, 104, 202, 556, 595
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FaqI GGGAC 1 cut(s) 401
FatI CATG 5 cut(s) 57, 100, 198, 552, 591
FbaI TGATCA 2 cut(s) 343, 555
FriOI GRGCYC 2 cut(s) 91, 215
FspBI CTAG 2 cut(s) 63, 414
GlaI GCGC 3 cut(s) 122, 189, 451
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 2 cut(s) 51, 479
HapII CCGG 1 cut(s) 447
HgaI GACGC 2 cut(s) 398, 514
HhaI GCGC 3 cut(s) 123, 190, 452
Hin1II CATG 5 cut(s) 61, 104, 202, 556, 595
Hin6I GCGC 3 cut(s) 121, 188, 450
HinP1I GCGC 3 cut(s) 121, 188, 450
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 2 cut(s) 13, 77
HpaII CCGG 1 cut(s) 447
HphI GGTGA 2 cut(s) 184, 244
Hpy166II GTNNAC 2 cut(s) 541, 614
Hpy188I TCNGA 2 cut(s) 97, 348
Hpy188III TCNNGA 9 cut(s) 17, 84, 101, 163, 199, 208, 245, 313, 559
Hpy8I GTNNAC 2 cut(s) 541, 614
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 285, 427, 529
HpyCH4III ACNGT 5 cut(s) 181, 196, 241, 266, 463
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 4 cut(s) 74, 494, 588, 636
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 152
HpyF3I CTNAG 3 cut(s) 402, 509, 576
HpySE526I ACGT 1 cut(s) 515
Hsp92II CATG 5 cut(s) 61, 104, 202, 556, 595
HspAI GCGC 3 cut(s) 121, 188, 450
Ksp22I TGATCA 2 cut(s) 343, 555
Kzo9I GATC 5 cut(s) 97, 165, 343, 438, 555
LpnPI CCDG 9 cut(s) 176, 230, 415, 442, 460, 480, 493, 608, 635
LweI GCATC 2 cut(s) 61, 132
MaeI CTAG 2 cut(s) 63, 414
MaeII ACGT 1 cut(s) 515
MaeIII GTNAC 1 cut(s) 502
MalI GATC 5 cut(s) 99, 167, 345, 440, 557
MboI GATC 5 cut(s) 97, 165, 343, 438, 555
MboII GAAGA 6 cut(s) 72, 142, 175, 535, 574, 577
MhlI GDGCHC 3 cut(s) 91, 215, 377
MlsI TGGCCA 2 cut(s) 51, 479
MluCI AATT 3 cut(s) 322, 466, 637
MluNI TGGCCA 2 cut(s) 51, 479
MnlI CCTC 5 cut(s) 3, 260, 268, 361, 364
Mox20I TGGCCA 2 cut(s) 51, 479
MscI TGGCCA 2 cut(s) 51, 479
MseI TTAA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 197
Msp20I TGGCCA 2 cut(s) 51, 479
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 2 cut(s) 430, 623
MvaI CCWGG 2 cut(s) 430, 623
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 41, 152
NcoI CCATGG 2 cut(s) 57, 591
NdeII GATC 5 cut(s) 97, 165, 343, 438, 555
NlaIII CATG 5 cut(s) 61, 104, 202, 556, 595
NmuCI GTSAC 1 cut(s) 502
NspV TTCGAA 1 cut(s) 470
PagI TCATGA 2 cut(s) 100, 198
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 512
PfeI GAWTC 2 cut(s) 13, 77
PflMI CCANNNNNTGG 1 cut(s) 58
PfoI TCCNGGA 1 cut(s) 621
Ppu21I YACGTR 1 cut(s) 516
PpuMI RGGWCCY 1 cut(s) 247
Psp124BI GAGCTC 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 2 cut(s) 428, 621
PspGI CCWGG 2 cut(s) 428, 621
PspPI GGNCC 1 cut(s) 247
PspPPI RGGWCCY 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 500
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 335, 518
RsaNI GTAC 2 cut(s) 334, 517
RseI CAYNNNNRTG 1 cut(s) 197
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 465
Sau3AI GATC 5 cut(s) 97, 165, 343, 438, 555
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 430, 623
SduI GDGCHC 3 cut(s) 91, 215, 377
SfaNI GCATC 2 cut(s) 61, 132
SfuI TTCGAA 1 cut(s) 470
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 3 cut(s) 322, 466, 637
SsiI CCGC 1 cut(s) 331
SspMI CTAG 2 cut(s) 63, 414
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 428, 621
StyI CCWWGG 2 cut(s) 57, 591
TaaI ACNGT 5 cut(s) 181, 196, 241, 266, 463
TaiI ACGT 1 cut(s) 518
TaqI TCGA 2 cut(s) 470, 521
TasI AATT 3 cut(s) 322, 466, 637
TfiI GAWTC 2 cut(s) 13, 77
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 2 cut(s) 271, 487
TseFI GTSAC 1 cut(s) 502
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 5 cut(s) 215, 352, 563, 590, 596
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 271, 487
Van91I CCANNNNNTGG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 247
XspI CTAG 2 cut(s) 63, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.