RLG00000026401

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017720
Physical Location & Seq
Forward (+)
2798242 .. 2798877
636 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026401

Sequence Viewer

Length: 636 bp
ATGGCAGAGAGGAATCAAGAGGCTTACCCTTTCGCACCATACGCTAATGGGCAAGCCATGGCCAGAAGCGATGCAGAATATTCAAGAGCTCACTCCGATAATGAGCTACGCAGAAAGAAGCGCATCAAATGTCTAATCTACATCGCGGTTTTCGCTGTGTTCCAGATCATAGTCATAACTGTTTTCGCACTCACTGTCATGCGTGTCAAGAGCCCCAAGTTCCGTATCCAAGCCATCACGGTTGAGGAACTCAACACCACGGCCAATCCCTCGCTTACTATGAGGTTCATTGCTGAAGTTTCTGTTAAGAACCCTAATTTCGGGCGGTACAAGTATGATCATACCTCCATTGGCTTTATTTATAAGGGCACCCAAGTTGGGGATGCTGTTGTTCCTCAGGAAACGGCTAGGACTAAAGCGACCAGGAAGACGATCGTGTCCGGGGCCGTGACTACCGTTAATTCGAACTTGGCCAGTGATATAAGTTCAGGGTCTGTGACGCTTAGCACGTACTCGAAGATAAACGGGAAGGTGTACTTGATGAACATGATCAAGAAGAAGAAGTCAGCTGAGATGAAATGCACCATGATCGTTAATTTGATAAGTAAACAAGTCCACGGTATCAAATGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

212

Amino Acids

23.52

Weight (kDa)

9.95

Isoelectric Point (pI)

23.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 100 - 195 8.4e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017720)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30560
malus_domestica MD07G1281500.v1.1
rosa_chinensis RchiOBHm_Chr1g0379401
rosa_laevigata RLG00000009300 RLG00000026401
rosa_multiflora Rmu_co8197020.1_g000001 Rmu_sc0006761.1_g000011
rosa_roxburghii Rroxscaffold_4G00280190 Rroxscaffold_5G00373460
rosa_rugosa Rorug01G0411900
rosa_samantha Rh1AG434500
rosa_wichuraiana Rw1G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AasI GACNNNNNNGTC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 368
AccII CGCG 1 cut(s) 146
AciI CCGC 2 cut(s) 146, 325
AcoI YGGCCR 3 cut(s) 60, 261, 471
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 3 cut(s) 329, 512, 536
AfiI CCNNNNNNNGG 3 cut(s) 320, 378, 379
AgsI TTSAA 1 cut(s) 84
AjnI CCWGG 1 cut(s) 422
AluBI AGCT 3 cut(s) 89, 106, 569
AluI AGCT 3 cut(s) 89, 106, 569
Alw21I GWGCWC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 4 cut(s) 60, 261, 444, 471
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 444
AsuC2I CCSGG 1 cut(s) 442
AsuII TTCGAA 1 cut(s) 464
AxyI CCTNAGG 1 cut(s) 396
BaeGI GKGCMC 1 cut(s) 371
BalI TGGCCA 2 cut(s) 62, 473
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 91, 215
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 1 cut(s) 242
BceAI ACGGC 3 cut(s) 276, 420, 431
BcgI CGANNNNNNTGC 2 cut(s) 571, 605
BciT130I CCWGG 1 cut(s) 424
BciVI GTATCC 1 cut(s) 236
BclI TGATCA 2 cut(s) 337, 549
BcnI CCSGG 1 cut(s) 442
BfaI CTAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 236
BlpI GCTNAGC 1 cut(s) 503
Bme1390I CCNGG 2 cut(s) 424, 442
BmgT120I GGNCC 1 cut(s) 444
BmiI GGNNCC 2 cut(s) 370, 445
BmrFI CCNGG 2 cut(s) 424, 442
BmsI GCATC 3 cut(s) 61, 132, 373
BpiI GAAGAC 1 cut(s) 434
Bpu1102I GCTNAGC 1 cut(s) 503
Bpu14I TTCGAA 1 cut(s) 464
BpuMI CCSGG 1 cut(s) 442
BsaAI YACGTR 1 cut(s) 510
BsaJI CCNNGG 4 cut(s) 57, 258, 441, 616
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 378, 379
Bse1I ACTGG 1 cut(s) 474
Bse21I CCTNAGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 4 cut(s) 57, 258, 441, 616
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 3 cut(s) 320, 378, 379
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 2 cut(s) 410, 561
BseNI ACTGG 1 cut(s) 474
BseSI GKGCMC 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 146
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 4 cut(s) 62, 263, 446, 473
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 441
BslI CCNNNNNNNGG 3 cut(s) 320, 378, 379
BsnI GGCC 4 cut(s) 62, 263, 446, 473
Bsp119I TTCGAA 1 cut(s) 464
Bsp1286I GDGCHC 3 cut(s) 91, 215, 371
Bsp143I GATC 5 cut(s) 165, 337, 432, 549, 588
Bsp1720I GCTNAGC 1 cut(s) 503
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 2 cut(s) 146, 325
BspANI GGCC 4 cut(s) 62, 263, 446, 473
BspCNI CTCAG 2 cut(s) 409, 562
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 370, 445
BspT104I TTCGAA 1 cut(s) 464
BspT107I GGYRCC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 1 cut(s) 474
BssECI CCNNGG 4 cut(s) 57, 258, 441, 616
BssMI GATC 5 cut(s) 165, 337, 432, 549, 588
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 424
Bst4CI ACNGT 5 cut(s) 181, 196, 241, 457, 620
BstBAI YACGTR 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 3 cut(s) 396, 503, 570
BstDSI CCRYGG 3 cut(s) 57, 258, 616
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 5 cut(s) 168, 340, 435, 552, 591
BstMBI GATC 5 cut(s) 165, 337, 432, 549, 588
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 2 cut(s) 41, 152
BstNI CCWGG 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 422, 440
BstSLI GKGCMC 1 cut(s) 371
BstUI CGCG 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 434
Bsu36I CCTNAGG 1 cut(s) 396
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 4 cut(s) 62, 263, 446, 473
BtgI CCRYGG 3 cut(s) 57, 258, 616
BtgZI GCGATG 2 cut(s) 84, 127
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 192, 481
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 444
CseI GACGC 1 cut(s) 508
Csp6I GTAC 3 cut(s) 328, 511, 535
CviAII CATG 4 cut(s) 58, 199, 547, 586
CviQI GTAC 3 cut(s) 328, 511, 535
DdeI CTNAG 3 cut(s) 396, 503, 570
DpnI GATC 5 cut(s) 167, 339, 434, 551, 590
DpnII GATC 5 cut(s) 165, 337, 432, 549, 588
DrdI GACNNNNNNGTC 1 cut(s) 436
DseDI GACNNNNNNGTC 1 cut(s) 436
EaeI YGGCCR 3 cut(s) 60, 261, 471
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 2 cut(s) 91, 215
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 2 cut(s) 91, 215
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 4 cut(s) 61, 202, 550, 589
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FatI CATG 4 cut(s) 57, 198, 546, 585
FbaI TGATCA 2 cut(s) 337, 549
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 2 cut(s) 91, 215
FspBI CTAG 1 cut(s) 408
GlaI GCGC 1 cut(s) 122
HaeIII GGCC 4 cut(s) 62, 263, 446, 473
HapII CCGG 1 cut(s) 441
HgaI GACGC 1 cut(s) 508
HhaI GCGC 1 cut(s) 123
Hin1II CATG 4 cut(s) 61, 202, 550, 589
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 13
HpaII CCGG 1 cut(s) 441
Hpy166II GTNNAC 3 cut(s) 535, 608, 616
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 6 cut(s) 17, 84, 163, 208, 398, 553
Hpy8I GTNNAC 3 cut(s) 535, 608, 616
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 5 cut(s) 181, 196, 241, 457, 620
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 3 cut(s) 74, 582, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 152
HpyF3I CTNAG 3 cut(s) 396, 503, 570
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 4 cut(s) 61, 202, 550, 589
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 2 cut(s) 337, 549
Kzo9I GATC 5 cut(s) 165, 337, 432, 549, 588
LpnPI CCDG 8 cut(s) 76, 176, 383, 409, 436, 454, 474, 487
LweI GCATC 3 cut(s) 61, 132, 373
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 509
MaeIII GTNAC 2 cut(s) 448, 496
MalI GATC 5 cut(s) 167, 339, 434, 551, 590
MboI GATC 5 cut(s) 165, 337, 432, 549, 588
MboII GAAGA 4 cut(s) 439, 529, 568, 571
MhlI GDGCHC 3 cut(s) 91, 215, 371
MlsI TGGCCA 2 cut(s) 62, 473
MluCI AATT 4 cut(s) 316, 460, 595, 631
MluNI TGGCCA 2 cut(s) 62, 473
MnlI CCTC 7 cut(s) 3, 13, 238, 276, 280, 355, 405
Mox20I TGGCCA 2 cut(s) 62, 473
MscI TGGCCA 2 cut(s) 62, 473
MseI TTAA 3 cut(s) 306, 459, 594
MslI CAYNNNNRTG 1 cut(s) 197
Msp20I TGGCCA 2 cut(s) 62, 473
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 2 cut(s) 424, 442
MvaI CCWGG 1 cut(s) 424
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 41, 152
NciI CCSGG 1 cut(s) 442
NcoI CCATGG 1 cut(s) 57
NdeII GATC 5 cut(s) 165, 337, 432, 549, 588
NlaIII CATG 4 cut(s) 61, 202, 550, 589
NlaIV GGNNCC 2 cut(s) 370, 445
NmuCI GTSAC 2 cut(s) 448, 496
NspV TTCGAA 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 506
PfeI GAWTC 1 cut(s) 13
Ple19I CGATCG 1 cut(s) 435
Ppu21I YACGTR 1 cut(s) 510
PsiI TTATAA 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 370, 445
PspPI GGNCC 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 494
PvuI CGATCG 1 cut(s) 435
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 3 cut(s) 329, 512, 536
RsaNI GTAC 3 cut(s) 328, 511, 535
RseI CAYNNNNRTG 1 cut(s) 197
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 3 cut(s) 306, 459, 594
Sau3AI GATC 5 cut(s) 165, 337, 432, 549, 588
Sau96I GGNCC 1 cut(s) 444
ScrFI CCNGG 2 cut(s) 424, 442
SduI GDGCHC 3 cut(s) 91, 215, 371
SetI ASST 7 cut(s) 91, 108, 287, 347, 512, 534, 571
SfaNI GCATC 3 cut(s) 61, 132, 373
SfuI TTCGAA 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 4 cut(s) 316, 460, 595, 631
SsiI CCGC 2 cut(s) 146, 325
SspI AATATT 1 cut(s) 80
SspMI CTAG 1 cut(s) 408
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 422, 440
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 5 cut(s) 181, 196, 241, 457, 620
TaiI ACGT 1 cut(s) 512
TaqI TCGA 2 cut(s) 464, 515
TasI AATT 4 cut(s) 316, 460, 595, 631
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 3 cut(s) 306, 459, 594
Tru9I TTAA 3 cut(s) 306, 459, 594
TscAI CASTG 2 cut(s) 199, 481
TseFI GTSAC 2 cut(s) 448, 496
Tsp45I GTSAC 2 cut(s) 448, 496
TspDTI ATGAA 3 cut(s) 277, 557, 590
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 199, 481
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.