RLG00000009300

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017720
Physical Location & Seq
Reverse (-)
50472286 .. 50473068
783 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009300

Sequence Viewer

Length: 783 bp
ATGCCAGAGAGGAATCAAGAGGCTTACCCTTTCGCACCATATGCTAATGGGCAAGCCATGGCCAGAAGTGATGCAGAATCTTCGAGAGCTCACTCCGATGATGAGCTACGTAGAAAGAAGCGCATCAAATGTCTAATCTACAAAGCCATCGTTATTTATAAAGGCACCCAAGTTGGGGATGCTGTGTTCCAGATCATAGTCATAACTGTTTTCGCACTCACTGTCATGCGTGTCAAGAGTCCCAAGTTCCGTATCCAAGCCATCACGGTTGAGGAACTCAACATCACGGCCAATCCCTCGCTTACTATGAGGTTCATTGCTGAAGTTTCTGTCAAGAACCCTAATTTCGGGCGGTACAAGTATGATCAGACCTCCATTAGCTTTATTTATAAGGGCACCCAAGTTGGGGATGCTGTTGTTCCTCAGGAAACGGCTAGGACTAAAGCGACCAGGAAGACGATCGTGTCCGGGGCCGTCACTACCGTTAATTCGAACTTGGCCAGTGATATAAGTTCAGGGTCTGTGACGCTTAGCACGTACTCGAAGATAAACGGGAAGGTGTACTTGATGAACATGATCAAGAAGAAGTCAGCTGAGATGAAATGCACCATGATCGTTAATTTGACAAATAAACAAGTCCACGATAACCAGCGCTCTGCTAGGGTTTCGGAATCCTCCTCCTCTGGGCGGTGGGCTCTCGAATTCTTGCTGTTGCTTGTCAATGGTGGTGATGGCAGATTTTGCTCTGCTTGTTCTGTTCGTCATTGCATTGTGGGACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

261

Amino Acids

28.79

Weight (kDa)

9.84

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 109 - 203 4.8e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017720)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30560
malus_domestica MD07G1281500.v1.1
rosa_chinensis RchiOBHm_Chr1g0379401
rosa_laevigata RLG00000009300 RLG00000026401
rosa_multiflora Rmu_co8197020.1_g000001 Rmu_sc0006761.1_g000011
rosa_roxburghii Rroxscaffold_4G00280190 Rroxscaffold_5G00373460
rosa_rugosa Rorug01G0411900
rosa_samantha Rh1AG434500
rosa_wichuraiana Rw1G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 159, 390
AasI GACNNNNNNGTC 1 cut(s) 463
AccB1I GGYRCC 2 cut(s) 164, 395
AciI CCGC 2 cut(s) 352, 688
AcoI YGGCCR 3 cut(s) 60, 288, 498
AcsI RAATTY 1 cut(s) 701
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 3 cut(s) 356, 539, 563
AfeI AGCGCT 1 cut(s) 653
AfiI CCNNNNNNNGG 7 cut(s) 174, 175, 347, 405, 406, 684, 687
AjnI CCWGG 1 cut(s) 449
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 4 cut(s) 89, 106, 381, 593
AluI AGCT 4 cut(s) 89, 106, 381, 593
Alw21I GWGCWC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 521
Aor51HI AGCGCT 1 cut(s) 653
AoxI GGCC 4 cut(s) 60, 288, 471, 498
ApoI RAATTY 1 cut(s) 701
AspLEI GCGC 2 cut(s) 123, 654
AspS9I GGNCC 1 cut(s) 471
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 740
AsuII TTCGAA 1 cut(s) 491
AxyI CCTNAGG 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 398
BalI TGGCCA 2 cut(s) 62, 500
BanI GGYRCC 2 cut(s) 164, 395
BanII GRGCYC 2 cut(s) 91, 697
BbsI GAAGAC 1 cut(s) 461
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 3 cut(s) 155, 269, 725
BceAI ACGGC 3 cut(s) 303, 447, 458
BcgI CGANNNNNNTGC 4 cut(s) 63, 97, 595, 629
BciT130I CCWGG 1 cut(s) 451
BciVI GTATCC 1 cut(s) 263
BclI TGATCA 2 cut(s) 364, 576
BcnI CCSGG 1 cut(s) 469
BfaI CTAG 2 cut(s) 435, 660
BfoI RGCGCY 1 cut(s) 655
BfuI GTATCC 1 cut(s) 263
BlpI GCTNAGC 1 cut(s) 530
Bme1390I CCNGG 2 cut(s) 451, 469
BmgT120I GGNCC 1 cut(s) 471
BmiI GGNNCC 3 cut(s) 166, 397, 472
BmrFI CCNGG 2 cut(s) 451, 469
BmsI GCATC 4 cut(s) 61, 132, 169, 400
BpiI GAAGAC 1 cut(s) 461
Bpu1102I GCTNAGC 1 cut(s) 530
Bpu14I TTCGAA 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 469
BsaAI YACGTR 2 cut(s) 110, 537
BsaJI CCNNGG 2 cut(s) 57, 468
Bsc4I CCNNNNNNNGG 7 cut(s) 174, 175, 347, 405, 406, 684, 687
Bse1I ACTGG 1 cut(s) 501
Bse21I CCTNAGG 1 cut(s) 423
Bse3DI GCAATG 2 cut(s) 315, 763
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 2 cut(s) 57, 468
BseGI GGATG 2 cut(s) 184, 415
BseLI CCNNNNNNNGG 7 cut(s) 174, 175, 347, 405, 406, 684, 687
BseMI GCAATG 2 cut(s) 315, 763
BseMII CTCAG 2 cut(s) 437, 585
BseNI ACTGG 1 cut(s) 501
BseRI GAGGAG 2 cut(s) 667, 670
BseSI GKGCMC 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 4 cut(s) 62, 290, 473, 500
BshNI GGYRCC 2 cut(s) 164, 395
BsiEI CGRYCG 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 7 cut(s) 174, 175, 347, 405, 406, 684, 687
BsmFI GGGAC 1 cut(s) 225
BsnI GGCC 4 cut(s) 62, 290, 473, 500
Bsp119I TTCGAA 1 cut(s) 491
Bsp1286I GDGCHC 3 cut(s) 91, 398, 697
Bsp143I GATC 5 cut(s) 192, 364, 459, 576, 612
Bsp1720I GCTNAGC 1 cut(s) 530
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 2 cut(s) 352, 688
BspANI GGCC 4 cut(s) 62, 290, 473, 500
BspCNI CTCAG 2 cut(s) 436, 586
BspLI GGNNCC 3 cut(s) 166, 397, 472
BspT104I TTCGAA 1 cut(s) 491
BspT107I GGYRCC 2 cut(s) 164, 395
BsrDI GCAATG 2 cut(s) 315, 763
BsrI ACTGG 1 cut(s) 501
BssECI CCNNGG 2 cut(s) 57, 468
BssMI GATC 5 cut(s) 192, 364, 459, 576, 612
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 451
Bst4CI ACNGT 4 cut(s) 208, 223, 268, 484
BstAPI GCANNNNNTGC 2 cut(s) 41, 741
BstBAI YACGTR 2 cut(s) 110, 537
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 3 cut(s) 423, 530, 594
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 184, 415
BstH2I RGCGCY 1 cut(s) 655
BstHHI GCGC 2 cut(s) 123, 654
BstKTI GATC 5 cut(s) 195, 367, 462, 579, 615
BstMBI GATC 5 cut(s) 192, 364, 459, 576, 612
BstMCI CGRYCG 1 cut(s) 462
BstMWI GCNNNNNNNGC 2 cut(s) 41, 741
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 2 cut(s) 449, 467
BstSLI GKGCMC 1 cut(s) 398
BstSNI TACGTA 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 461
Bsu36I CCTNAGG 1 cut(s) 423
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 4 cut(s) 62, 290, 473, 500
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 184, 415
BtsIMutI CAGTG 2 cut(s) 219, 508
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 521
CfoI GCGC 2 cut(s) 123, 654
Cfr13I GGNCC 1 cut(s) 471
CseI GACGC 1 cut(s) 535
Csp6I GTAC 3 cut(s) 355, 538, 562
CviAII CATG 4 cut(s) 58, 226, 574, 610
CviQI GTAC 3 cut(s) 355, 538, 562
DdeI CTNAG 3 cut(s) 423, 530, 594
DpnI GATC 5 cut(s) 194, 366, 461, 578, 614
DpnII GATC 5 cut(s) 192, 364, 459, 576, 612
DrdI GACNNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 463
EaeI YGGCCR 3 cut(s) 60, 288, 498
Ecl136II GAGCTC 1 cut(s) 89
Eco105I TACGTA 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 2 cut(s) 91, 697
Eco47III AGCGCT 1 cut(s) 653
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 342
Eco81I CCTNAGG 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 2 cut(s) 91, 697
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 4 cut(s) 61, 229, 577, 613
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 1 cut(s) 225
FatI CATG 4 cut(s) 57, 225, 573, 609
FauNDI CATATG 1 cut(s) 40
FbaI TGATCA 2 cut(s) 364, 576
FokI GGATG 2 cut(s) 191, 422
FriOI GRGCYC 2 cut(s) 91, 697
FspBI CTAG 2 cut(s) 435, 660
GlaI GCGC 2 cut(s) 122, 653
HaeII RGCGCY 1 cut(s) 655
HaeIII GGCC 4 cut(s) 62, 290, 473, 500
HapII CCGG 1 cut(s) 468
HgaI GACGC 1 cut(s) 535
HhaI GCGC 2 cut(s) 123, 654
Hin1II CATG 4 cut(s) 61, 229, 577, 613
Hin6I GCGC 2 cut(s) 121, 652
HinP1I GCGC 2 cut(s) 121, 652
HinfI GANTC 4 cut(s) 13, 77, 238, 671
HpaII CCGG 1 cut(s) 468
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 2 cut(s) 562, 640
Hpy188I TCNGA 3 cut(s) 97, 369, 670
Hpy188III TCNNGA 8 cut(s) 17, 84, 190, 235, 334, 425, 580, 698
Hpy8I GTNNAC 2 cut(s) 562, 640
HpyAV CCTTC 1 cut(s) 550
HpyCH4III ACNGT 4 cut(s) 208, 223, 268, 484
HpyCH4IV ACGT 2 cut(s) 109, 536
HpyCH4V TGCA 3 cut(s) 74, 606, 768
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 741
HpyF3I CTNAG 3 cut(s) 423, 530, 594
HpySE526I ACGT 2 cut(s) 109, 536
Hsp92II CATG 4 cut(s) 61, 229, 577, 613
HspAI GCGC 2 cut(s) 121, 652
Ksp22I TGATCA 2 cut(s) 364, 576
Kzo9I GATC 5 cut(s) 192, 364, 459, 576, 612
LweI GCATC 4 cut(s) 61, 132, 169, 400
MaeI CTAG 2 cut(s) 435, 660
MaeII ACGT 2 cut(s) 109, 536
MaeIII GTNAC 2 cut(s) 475, 523
MalI GATC 5 cut(s) 194, 366, 461, 578, 614
MboI GATC 5 cut(s) 192, 364, 459, 576, 612
MboII GAAGA 4 cut(s) 72, 466, 556, 595
MhlI GDGCHC 3 cut(s) 91, 398, 697
MlsI TGGCCA 2 cut(s) 62, 500
MluCI AATT 4 cut(s) 343, 487, 619, 701
MluNI TGGCCA 2 cut(s) 62, 500
MlyI GAGTC 1 cut(s) 247
Mox20I TGGCCA 2 cut(s) 62, 500
MscI TGGCCA 2 cut(s) 62, 500
MseI TTAA 2 cut(s) 486, 618
MslI CAYNNNNRTG 2 cut(s) 96, 224
Msp20I TGGCCA 2 cut(s) 62, 500
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 2 cut(s) 451, 469
MvaI CCWGG 1 cut(s) 451
MwoI GCNNNNNNNGC 2 cut(s) 41, 741
NciI CCSGG 1 cut(s) 469
NcoI CCATGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 40
NdeII GATC 5 cut(s) 192, 364, 459, 576, 612
NlaIII CATG 4 cut(s) 61, 229, 577, 613
NlaIV GGNNCC 3 cut(s) 166, 397, 472
NmuCI GTSAC 2 cut(s) 475, 523
NspV TTCGAA 1 cut(s) 491
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PfeI GAWTC 3 cut(s) 13, 77, 671
Ple19I CGATCG 1 cut(s) 462
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Ppu21I YACGTR 2 cut(s) 110, 537
PsiI TTATAA 2 cut(s) 159, 390
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 3 cut(s) 166, 397, 472
PspPI GGNCC 1 cut(s) 471
PstNI CAGNNNCTG 1 cut(s) 521
PvuI CGATCG 1 cut(s) 462
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 3 cut(s) 356, 539, 563
RsaNI GTAC 3 cut(s) 355, 538, 562
RseI CAYNNNNRTG 2 cut(s) 96, 224
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 486, 618
Sau3AI GATC 5 cut(s) 192, 364, 459, 576, 612
Sau96I GGNCC 1 cut(s) 471
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 451, 469
SduI GDGCHC 3 cut(s) 91, 398, 697
SetI ASST 9 cut(s) 91, 108, 112, 314, 374, 383, 539, 561, 595
SfaNI GCATC 4 cut(s) 61, 132, 169, 400
SfuI TTCGAA 1 cut(s) 491
SmiMI CAYNNNNRTG 2 cut(s) 96, 224
SnaBI TACGTA 1 cut(s) 110
Sse9I AATT 4 cut(s) 343, 487, 619, 701
SsiI CCGC 2 cut(s) 352, 688
SspMI CTAG 2 cut(s) 435, 660
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 449, 467
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 4 cut(s) 208, 223, 268, 484
TaiI ACGT 2 cut(s) 112, 539
TaqI TCGA 4 cut(s) 83, 491, 542, 699
TasI AATT 4 cut(s) 343, 487, 619, 701
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 3 cut(s) 13, 77, 671
Tru1I TTAA 2 cut(s) 486, 618
Tru9I TTAA 2 cut(s) 486, 618
TscAI CASTG 2 cut(s) 226, 508
TseFI GTSAC 2 cut(s) 475, 523
Tsp45I GTSAC 2 cut(s) 475, 523
TspDTI ATGAA 3 cut(s) 304, 584, 614
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 2 cut(s) 226, 508
XapI RAATTY 1 cut(s) 701
XspI CTAG 2 cut(s) 435, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.