Rroxscaffold_5G00373460

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017720
Physical Location & Seq
Forward (+)
54668313 .. 54671304
2992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373460.1

Sequence Viewer

Length: 912 bp
ATGGCAGAGAGGAATCAAGAGGCTTACCCTTTCGCACCATACGCTAATGGGCAAGCCATGGCCAGAAGCGATGCAGAATCTTCGAGAGCTCACTCCGATGATGAGCTACGCAGAAAGAAGCGCATCAAATGTCTAATCTACATCGCGGTTTTCGCTGTGTTCCAGATCATAGTCATAGCTGTTTTCGCACTGACTGTCATGCGTGTCAAGAGCCCCAAGTTCCGTATCCAAGCCATCACGGTTGAGGAACTCAACACCACGGCCAATCCCTCGCTTACTATGAGGTTCATTGCTGAAGTTTCTGTCAAGAACCCTAATTTCGGGCGGTACAAATATGATCAGACCTCCATTAGCTTTATTTATAAGGGCACCCAAGTTGGGGATGCTGTTGTTCCTCAGGAAACGGCTAGGACTAAAGCGACCAGGAAGACGATCGTGTCCGGGGCCGTGACTACCGTTAGTTCGAACTTGGCCAGTGATATAAGTTCAGGGTCTGTGACGCTTAGCACGTACTCGAAGATAAACGGGAAGGTGTACTTGATGAACATGATCAAGAAGAAGAAGTCAGCTGAGATGAAATGCACCATGATCCTCCTTGACCTTAGCTCGAAGCTTAAGGAGGACACGCGGGCTGATGATGGAGATACAACTTTTGCTTTATTTGCATCTCTACTTGACTCTGCTCTTCAAGTGTTGATGCCTTTTCCTGACCTGATACTAAGACTCGAAGAATCATGCAGAAATGTTTCAGAGTCAATTACGTATGTCCTCATTTTGACAGTAATTGCAAAGATGTGGACCGAAGAGATCCCTAAAGAGCTCATCTTGTTTCCCTCAACATCACCTTTGGAGGCTTGCCAGTTTGTTGCGGACGATCTTATAGCACAGTTATGCTTACAAATTGTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

303

Amino Acids

33.7

Weight (kDa)

8.68

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 100 - 195 3.3e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017720)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30560
malus_domestica MD07G1281500.v1.1
rosa_chinensis RchiOBHm_Chr1g0379401
rosa_laevigata RLG00000009300 RLG00000026401
rosa_multiflora Rmu_co8197020.1_g000001 Rmu_sc0006761.1_g000011
rosa_roxburghii Rroxscaffold_4G00280190 Rroxscaffold_5G00373460
rosa_rugosa Rorug01G0411900
rosa_samantha Rh1AG434500
rosa_wichuraiana Rw1G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AasI GACNNNNNNGTC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 368
AccII CGCG 2 cut(s) 146, 628
AciI CCGC 4 cut(s) 146, 325, 628, 869
AclWI GGATC 2 cut(s) 583, 802
AcoI YGGCCR 3 cut(s) 60, 261, 471
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 3 cut(s) 329, 512, 536
AfiI CCNNNNNNNGG 3 cut(s) 320, 378, 379
AflII CTTAAG 1 cut(s) 614
AgsI TTSAA 2 cut(s) 689, 908
AjnI CCWGG 1 cut(s) 422
AluBI AGCT 8 cut(s) 89, 106, 179, 354, 569, 606, 613, 820
AluI AGCT 8 cut(s) 89, 106, 179, 354, 569, 606, 613, 820
Alw21I GWGCWC 2 cut(s) 91, 822
AlwI GGATC 2 cut(s) 583, 802
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 4 cut(s) 60, 261, 444, 471
Asp700I GAANNNNTTC 1 cut(s) 745
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 444, 798
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 1 cut(s) 834
AsuII TTCGAA 1 cut(s) 464
AvaII GGWCC 1 cut(s) 798
AxyI CCTNAGG 1 cut(s) 396
BaeGI GKGCMC 1 cut(s) 371
BalI TGGCCA 2 cut(s) 62, 473
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 3 cut(s) 91, 215, 822
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 2 cut(s) 91, 822
BccI CCATC 2 cut(s) 242, 632
BceAI ACGGC 3 cut(s) 276, 420, 431
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 1 cut(s) 424
BciVI GTATCC 1 cut(s) 236
BclI TGATCA 2 cut(s) 337, 549
BcnI CCSGG 1 cut(s) 442
BfaI CTAG 1 cut(s) 408
BfrI CTTAAG 1 cut(s) 614
BfuI GTATCC 1 cut(s) 236
BlpI GCTNAGC 1 cut(s) 503
Bme1390I CCNGG 2 cut(s) 424, 442
Bme18I GGWCC 1 cut(s) 798
BmgT120I GGNCC 2 cut(s) 444, 798
BmiI GGNNCC 2 cut(s) 370, 445
BmrFI CCNGG 2 cut(s) 424, 442
BmsI GCATC 5 cut(s) 61, 132, 373, 674, 687
BpiI GAAGAC 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 602
Bpu1102I GCTNAGC 1 cut(s) 503
Bpu14I TTCGAA 1 cut(s) 464
BpuMI CCSGG 1 cut(s) 442
BsaAI YACGTR 2 cut(s) 510, 762
BsaJI CCNNGG 3 cut(s) 57, 258, 441
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 378, 379
Bse1I ACTGG 2 cut(s) 474, 859
Bse21I CCTNAGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 3 cut(s) 57, 258, 441
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 3 cut(s) 320, 378, 379
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 2 cut(s) 410, 561
BseNI ACTGG 2 cut(s) 474, 859
BseSI GKGCMC 1 cut(s) 371
Bsh1236I CGCG 2 cut(s) 146, 628
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 4 cut(s) 62, 263, 446, 473
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 2 cut(s) 91, 822
BsiSI CCGG 1 cut(s) 441
BslI CCNNNNNNNGG 3 cut(s) 320, 378, 379
BsnI GGCC 4 cut(s) 62, 263, 446, 473
Bsp119I TTCGAA 1 cut(s) 464
Bsp1286I GDGCHC 4 cut(s) 91, 215, 371, 822
Bsp143I GATC 7 cut(s) 165, 337, 432, 549, 588, 807, 874
Bsp1720I GCTNAGC 1 cut(s) 503
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 4 cut(s) 146, 325, 628, 869
BspANI GGCC 4 cut(s) 62, 263, 446, 473
BspCNI CTCAG 2 cut(s) 409, 562
BspFNI CGCG 2 cut(s) 146, 628
BspLI GGNNCC 2 cut(s) 370, 445
BspPI GGATC 2 cut(s) 583, 802
BspQI GCTCTTC 1 cut(s) 690
BspT104I TTCGAA 1 cut(s) 464
BspT107I GGYRCC 1 cut(s) 368
BspTI CTTAAG 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 2 cut(s) 474, 859
BssECI CCNNGG 3 cut(s) 57, 258, 441
BssMI GATC 7 cut(s) 165, 337, 432, 549, 588, 807, 874
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 424
Bst4CI ACNGT 5 cut(s) 196, 241, 457, 781, 888
Bst6I CTCTTC 2 cut(s) 690, 798
BstAFI CTTAAG 1 cut(s) 614
BstBAI YACGTR 2 cut(s) 510, 762
BstBI TTCGAA 1 cut(s) 464
BstC8I GCNNGC 3 cut(s) 54, 630, 856
BstDEI CTNAG 5 cut(s) 396, 503, 570, 602, 719
BstDSI CCRYGG 2 cut(s) 57, 258
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 2 cut(s) 146, 628
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 7 cut(s) 168, 340, 435, 552, 591, 810, 877
BstMBI GATC 7 cut(s) 165, 337, 432, 549, 588, 807, 874
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 4 cut(s) 41, 152, 185, 662
BstNI CCWGG 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 422, 440
BstSLI GKGCMC 1 cut(s) 371
BstSNI TACGTA 1 cut(s) 762
BstUI CGCG 2 cut(s) 146, 628
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 1 cut(s) 807
BstYI RGATCY 1 cut(s) 807
Bsu36I CCTNAGG 1 cut(s) 396
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 4 cut(s) 62, 263, 446, 473
BtgI CCRYGG 2 cut(s) 57, 258
BtgZI GCGATG 2 cut(s) 84, 127
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 188, 481
Cac8I GCNNGC 3 cut(s) 54, 630, 856
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 444, 798
CseI GACGC 1 cut(s) 508
Csp6I GTAC 3 cut(s) 328, 511, 535
CviAII CATG 5 cut(s) 58, 199, 547, 586, 735
CviQI GTAC 3 cut(s) 328, 511, 535
DdeI CTNAG 5 cut(s) 396, 503, 570, 602, 719
DpnI GATC 7 cut(s) 167, 339, 434, 551, 590, 809, 876
DpnII GATC 7 cut(s) 165, 337, 432, 549, 588, 807, 874
DrdI GACNNNNNNGTC 1 cut(s) 436
DseDI GACNNNNNNGTC 1 cut(s) 436
EaeI YGGCCR 3 cut(s) 60, 261, 471
Eam1104I CTCTTC 2 cut(s) 690, 798
EarI CTCTTC 2 cut(s) 690, 798
Ecl136II GAGCTC 2 cut(s) 89, 820
Eco105I TACGTA 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 3 cut(s) 91, 215, 822
Eco47I GGWCC 1 cut(s) 798
Eco53kI GAGCTC 2 cut(s) 89, 820
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 396
EcoICRI GAGCTC 2 cut(s) 89, 820
EcoRII CCWGG 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 3 cut(s) 91, 215, 822
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 5 cut(s) 61, 202, 550, 589, 738
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FatI CATG 5 cut(s) 57, 198, 546, 585, 734
FauI CCCGC 1 cut(s) 621
FbaI TGATCA 2 cut(s) 337, 549
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 3 cut(s) 91, 215, 822
FspBI CTAG 1 cut(s) 408
GlaI GCGC 1 cut(s) 122
HaeIII GGCC 4 cut(s) 62, 263, 446, 473
HapII CCGG 1 cut(s) 441
HgaI GACGC 1 cut(s) 508
HhaI GCGC 1 cut(s) 123
Hin1II CATG 5 cut(s) 61, 202, 550, 589, 738
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 6 cut(s) 13, 77, 677, 723, 731, 752
HpaII CCGG 1 cut(s) 441
HphI GGTGA 1 cut(s) 834
Hpy166II GTNNAC 2 cut(s) 535, 798
Hpy188I TCNGA 3 cut(s) 97, 342, 751
Hpy188III TCNNGA 8 cut(s) 17, 84, 163, 208, 307, 398, 553, 707
Hpy8I GTNNAC 2 cut(s) 535, 798
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 5 cut(s) 196, 241, 457, 781, 888
HpyCH4IV ACGT 2 cut(s) 509, 761
HpyCH4V TGCA 5 cut(s) 74, 582, 665, 738, 788
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 152, 185, 662
HpyF3I CTNAG 5 cut(s) 396, 503, 570, 602, 719
HpySE526I ACGT 2 cut(s) 509, 761
Hsp92II CATG 5 cut(s) 61, 202, 550, 589, 738
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 2 cut(s) 337, 549
Kzo9I GATC 7 cut(s) 165, 337, 432, 549, 588, 807, 874
LguI GCTCTTC 1 cut(s) 690
LweI GCATC 5 cut(s) 61, 132, 373, 674, 687
MaeI CTAG 1 cut(s) 408
MaeII ACGT 2 cut(s) 509, 761
MaeIII GTNAC 2 cut(s) 448, 496
MalI GATC 7 cut(s) 167, 339, 434, 551, 590, 809, 876
MboI GATC 7 cut(s) 165, 337, 432, 549, 588, 807, 874
MboII GAAGA 8 cut(s) 72, 439, 529, 568, 571, 677, 740, 815
MflI RGATCY 1 cut(s) 807
MhlI GDGCHC 4 cut(s) 91, 215, 371, 822
MlsI TGGCCA 2 cut(s) 62, 473
MluCI AATT 4 cut(s) 316, 756, 783, 900
MluNI TGGCCA 2 cut(s) 62, 473
MlyI GAGTC 3 cut(s) 671, 717, 761
Mox20I TGGCCA 2 cut(s) 62, 473
MroXI GAANNNNTTC 1 cut(s) 745
MscI TGGCCA 2 cut(s) 62, 473
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 2 cut(s) 96, 889
Msp20I TGGCCA 2 cut(s) 62, 473
MspA1I CMGCKG 1 cut(s) 569
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 2 cut(s) 424, 442
MvaI CCWGG 1 cut(s) 424
MvnI CGCG 2 cut(s) 146, 628
MwoI GCNNNNNNNGC 4 cut(s) 41, 152, 185, 662
NciI CCSGG 1 cut(s) 442
NcoI CCATGG 1 cut(s) 57
NdeII GATC 7 cut(s) 165, 337, 432, 549, 588, 807, 874
NlaIII CATG 5 cut(s) 61, 202, 550, 589, 738
NlaIV GGNNCC 2 cut(s) 370, 445
NmuCI GTSAC 2 cut(s) 448, 496
NspV TTCGAA 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 690
PcsI WCGNNNNNNNCGW 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 745
PfeI GAWTC 3 cut(s) 13, 77, 731
Ple19I CGATCG 1 cut(s) 435
PleI GAGTC 3 cut(s) 671, 717, 760
PpsI GAGTC 3 cut(s) 671, 717, 760
Ppu21I YACGTR 2 cut(s) 510, 762
PsiI TTATAA 1 cut(s) 363
Psp124BI GAGCTC 2 cut(s) 91, 822
Psp6I CCWGG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 370, 445
PspPI GGNCC 2 cut(s) 444, 798
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 807
PvuI CGATCG 1 cut(s) 435
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 3 cut(s) 329, 512, 536
RsaNI GTAC 3 cut(s) 328, 511, 535
RseI CAYNNNNRTG 2 cut(s) 96, 889
SacI GAGCTC 2 cut(s) 91, 822
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 1 cut(s) 615
Sau3AI GATC 7 cut(s) 165, 337, 432, 549, 588, 807, 874
Sau96I GGNCC 2 cut(s) 444, 798
SchI GAGTC 3 cut(s) 671, 717, 761
ScrFI CCNGG 2 cut(s) 424, 442
SduI GDGCHC 4 cut(s) 91, 215, 371, 822
SfaNI GCATC 5 cut(s) 61, 132, 373, 674, 687
SfuI TTCGAA 1 cut(s) 464
SinI GGWCC 1 cut(s) 798
SmiMI CAYNNNNRTG 2 cut(s) 96, 889
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SnaBI TACGTA 1 cut(s) 762
Sse9I AATT 4 cut(s) 316, 756, 783, 900
SsiI CCGC 4 cut(s) 146, 325, 628, 869
SspMI CTAG 1 cut(s) 408
SstI GAGCTC 2 cut(s) 91, 822
StyD4I CCNGG 2 cut(s) 422, 440
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 5 cut(s) 196, 241, 457, 781, 888
TaiI ACGT 2 cut(s) 512, 764
TaqI TCGA 5 cut(s) 83, 464, 515, 608, 726
TaqII GACCGA 1 cut(s) 815
TasI AATT 4 cut(s) 316, 756, 783, 900
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 3 cut(s) 13, 77, 731
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 2 cut(s) 195, 481
TseFI GTSAC 2 cut(s) 448, 496
Tsp45I GTSAC 2 cut(s) 448, 496
TspDTI ATGAA 3 cut(s) 277, 557, 590
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 195, 481
Vha464I CTTAAG 1 cut(s) 614
VpaK11BI GGWCC 1 cut(s) 798
XmnI GAANNNNTTC 1 cut(s) 745
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.