Rroxscaffold_4G00280190

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017720
Physical Location & Seq
Forward (+)
2807923 .. 2808522
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280190.1

Sequence Viewer

Length: 600 bp
ATGGCAGAGAGGAATCAAGAGGCTTACCCTTTCGCACCATACGCTAATGGGCAAGCCATGGCCAGAAGCGATGCAGAATCTTCGAGAGCTCACTCCGATGATGAGCTACGCAGAAAGAAGCGCATCAAATGTCTAATCTACATCGCGGTTTTCGCTGTGTTCCAGATCATAGTCATAACTGTTTTCGCACTCACTGTCATGCGTGTCAAGAGCCCCAAGTTCCGTATCCAAGTCATCACGGTTGAGGAACTCAACACCACGGCCAATCCCTCGCTTACTATGAGGTTCATTGCTGAAGTTTCTGTCAAGAACCCTAATTTCGGGCGGTACAAGTATGATCAGACCTCCATTAGCTTTATTTATAAGGGCACCCAAGTTGGGGATGCTGTTGTTCCTCAGGAAACGGCTAGGACTAAAGCGACCAGGAAGACGATCGTGTCCGGGGCCGTGACTACCGTTAATTCGAACTTGGCCAGTGATATAAGTTCAGGGTCTGTGACGCTTAGCACGTACTCGAAGATAAACGGGAAGGTGTACTTGATGAACATGATCAAGAAGAAGAAGTCAGCTGACATGCATGAAATGCACCATGATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

199

Amino Acids

22.31

Weight (kDa)

9.86

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 100 - 188 7.2e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017720)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30560
malus_domestica MD07G1281500.v1.1
rosa_chinensis RchiOBHm_Chr1g0379401
rosa_laevigata RLG00000009300 RLG00000026401
rosa_multiflora Rmu_co8197020.1_g000001 Rmu_sc0006761.1_g000011
rosa_roxburghii Rroxscaffold_4G00280190 Rroxscaffold_5G00373460
rosa_rugosa Rorug01G0411900
rosa_samantha Rh1AG434500
rosa_wichuraiana Rw1G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AasI GACNNNNNNGTC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 368
AccII CGCG 1 cut(s) 146
AciI CCGC 2 cut(s) 146, 325
AcoI YGGCCR 3 cut(s) 60, 261, 471
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 3 cut(s) 329, 512, 536
AfiI CCNNNNNNNGG 3 cut(s) 320, 378, 379
AjnI CCWGG 1 cut(s) 422
AluBI AGCT 4 cut(s) 89, 106, 354, 569
AluI AGCT 4 cut(s) 89, 106, 354, 569
Alw21I GWGCWC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 4 cut(s) 60, 261, 444, 471
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 444
AsuC2I CCSGG 1 cut(s) 442
AsuII TTCGAA 1 cut(s) 464
AxyI CCTNAGG 1 cut(s) 396
BaeGI GKGCMC 1 cut(s) 371
BalI TGGCCA 2 cut(s) 62, 473
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 91, 215
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 91
BceAI ACGGC 3 cut(s) 276, 420, 431
BcgI CGANNNNNNTGC 3 cut(s) 63, 97, 575
BciT130I CCWGG 1 cut(s) 424
BciVI GTATCC 1 cut(s) 236
BclI TGATCA 2 cut(s) 337, 549
BcnI CCSGG 1 cut(s) 442
BfaI CTAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 236
BlpI GCTNAGC 1 cut(s) 503
Bme1390I CCNGG 2 cut(s) 424, 442
BmgT120I GGNCC 1 cut(s) 444
BmiI GGNNCC 2 cut(s) 370, 445
BmrFI CCNGG 2 cut(s) 424, 442
BmsI GCATC 3 cut(s) 61, 132, 373
BpiI GAAGAC 1 cut(s) 434
Bpu1102I GCTNAGC 1 cut(s) 503
Bpu14I TTCGAA 1 cut(s) 464
BpuMI CCSGG 1 cut(s) 442
BsaAI YACGTR 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 57, 258, 441
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 378, 379
Bse1I ACTGG 1 cut(s) 474
Bse21I CCTNAGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 3 cut(s) 57, 258, 441
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 3 cut(s) 320, 378, 379
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 1 cut(s) 474
BseSI GKGCMC 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 146
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 4 cut(s) 62, 263, 446, 473
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 441
BslI CCNNNNNNNGG 3 cut(s) 320, 378, 379
BsnI GGCC 4 cut(s) 62, 263, 446, 473
Bsp119I TTCGAA 1 cut(s) 464
Bsp1286I GDGCHC 3 cut(s) 91, 215, 371
Bsp143I GATC 5 cut(s) 165, 337, 432, 549, 592
Bsp1720I GCTNAGC 1 cut(s) 503
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 2 cut(s) 146, 325
BspANI GGCC 4 cut(s) 62, 263, 446, 473
BspCNI CTCAG 1 cut(s) 409
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 370, 445
BspT104I TTCGAA 1 cut(s) 464
BspT107I GGYRCC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 1 cut(s) 474
BssECI CCNNGG 3 cut(s) 57, 258, 441
BssMI GATC 5 cut(s) 165, 337, 432, 549, 592
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 424
Bst4CI ACNGT 4 cut(s) 181, 196, 241, 457
BstAPI GCANNNNNTGC 1 cut(s) 583
BstBAI YACGTR 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 396, 503
BstDSI CCRYGG 2 cut(s) 57, 258
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 5 cut(s) 168, 340, 435, 552, 595
BstMBI GATC 5 cut(s) 165, 337, 432, 549, 592
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 3 cut(s) 41, 152, 583
BstNI CCWGG 1 cut(s) 424
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 2 cut(s) 422, 440
BstSLI GKGCMC 1 cut(s) 371
BstUI CGCG 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 434
Bsu36I CCTNAGG 1 cut(s) 396
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 4 cut(s) 62, 263, 446, 473
BtgI CCRYGG 2 cut(s) 57, 258
BtgZI GCGATG 2 cut(s) 84, 127
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 192, 481
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 444
CseI GACGC 1 cut(s) 508
Csp6I GTAC 3 cut(s) 328, 511, 535
CviAII CATG 6 cut(s) 58, 199, 547, 574, 578, 590
CviQI GTAC 3 cut(s) 328, 511, 535
DdeI CTNAG 2 cut(s) 396, 503
DpnI GATC 5 cut(s) 167, 339, 434, 551, 594
DpnII GATC 5 cut(s) 165, 337, 432, 549, 592
DrdI GACNNNNNNGTC 1 cut(s) 436
DseDI GACNNNNNNGTC 1 cut(s) 436
EaeI YGGCCR 3 cut(s) 60, 261, 471
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 2 cut(s) 91, 215
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 579
EcoT38I GRGCYC 2 cut(s) 91, 215
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 6 cut(s) 61, 202, 550, 577, 581, 593
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FatI CATG 6 cut(s) 57, 198, 546, 573, 577, 589
FbaI TGATCA 2 cut(s) 337, 549
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 2 cut(s) 91, 215
FspBI CTAG 1 cut(s) 408
GlaI GCGC 1 cut(s) 122
HaeIII GGCC 4 cut(s) 62, 263, 446, 473
HapII CCGG 1 cut(s) 441
HgaI GACGC 1 cut(s) 508
HhaI GCGC 1 cut(s) 123
Hin1II CATG 6 cut(s) 61, 202, 550, 577, 581, 593
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 2 cut(s) 13, 77
HpaII CCGG 1 cut(s) 441
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 2 cut(s) 97, 342
Hpy188III TCNNGA 7 cut(s) 17, 84, 163, 208, 307, 398, 553
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 4 cut(s) 181, 196, 241, 457
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 3 cut(s) 74, 577, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 152, 583
HpyF3I CTNAG 2 cut(s) 396, 503
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 6 cut(s) 61, 202, 550, 577, 581, 593
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 2 cut(s) 337, 549
Kzo9I GATC 5 cut(s) 165, 337, 432, 549, 592
LpnPI CCDG 8 cut(s) 76, 176, 383, 409, 436, 454, 474, 487
LweI GCATC 3 cut(s) 61, 132, 373
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 509
MaeIII GTNAC 2 cut(s) 448, 496
MalI GATC 5 cut(s) 167, 339, 434, 551, 594
MboI GATC 5 cut(s) 165, 337, 432, 549, 592
MboII GAAGA 5 cut(s) 72, 439, 529, 568, 571
MhlI GDGCHC 3 cut(s) 91, 215, 371
MlsI TGGCCA 2 cut(s) 62, 473
MluCI AATT 2 cut(s) 316, 460
MluNI TGGCCA 2 cut(s) 62, 473
MnlI CCTC 7 cut(s) 3, 13, 238, 276, 280, 355, 405
Mox20I TGGCCA 2 cut(s) 62, 473
Mph1103I ATGCAT 1 cut(s) 579
MscI TGGCCA 2 cut(s) 62, 473
MseI TTAA 2 cut(s) 459, 598
MslI CAYNNNNRTG 2 cut(s) 96, 197
Msp20I TGGCCA 2 cut(s) 62, 473
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 2 cut(s) 424, 442
MvaI CCWGG 1 cut(s) 424
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 41, 152, 583
NciI CCSGG 1 cut(s) 442
NcoI CCATGG 1 cut(s) 57
NdeII GATC 5 cut(s) 165, 337, 432, 549, 592
NlaIII CATG 6 cut(s) 61, 202, 550, 577, 581, 593
NlaIV GGNNCC 2 cut(s) 370, 445
NmuCI GTSAC 2 cut(s) 448, 496
NsiI ATGCAT 1 cut(s) 579
NspI RCATGY 1 cut(s) 577
NspV TTCGAA 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 506
PfeI GAWTC 2 cut(s) 13, 77
Ple19I CGATCG 1 cut(s) 435
Ppu21I YACGTR 1 cut(s) 510
PsiI TTATAA 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 370, 445
PspPI GGNCC 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 494
PvuI CGATCG 1 cut(s) 435
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 3 cut(s) 329, 512, 536
RsaNI GTAC 3 cut(s) 328, 511, 535
RseI CAYNNNNRTG 2 cut(s) 96, 197
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 459, 598
Sau3AI GATC 5 cut(s) 165, 337, 432, 549, 592
Sau96I GGNCC 1 cut(s) 444
ScrFI CCNGG 2 cut(s) 424, 442
SduI GDGCHC 3 cut(s) 91, 215, 371
SetI ASST 8 cut(s) 91, 108, 287, 347, 356, 512, 534, 571
SfaNI GCATC 3 cut(s) 61, 132, 373
SfuI TTCGAA 1 cut(s) 464
SmiMI CAYNNNNRTG 2 cut(s) 96, 197
Sse9I AATT 2 cut(s) 316, 460
SsiI CCGC 2 cut(s) 146, 325
SspMI CTAG 1 cut(s) 408
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 422, 440
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 4 cut(s) 181, 196, 241, 457
TaiI ACGT 1 cut(s) 512
TaqI TCGA 3 cut(s) 83, 464, 515
TasI AATT 2 cut(s) 316, 460
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 2 cut(s) 13, 77
Tru1I TTAA 2 cut(s) 459, 598
Tru9I TTAA 2 cut(s) 459, 598
TscAI CASTG 2 cut(s) 199, 481
TseFI GTSAC 2 cut(s) 448, 496
Tsp45I GTSAC 2 cut(s) 448, 496
TspDTI ATGAA 3 cut(s) 277, 557, 594
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 199, 481
XceI RCATGY 1 cut(s) 577
XspI CTAG 1 cut(s) 408
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.