MD07G1281500.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017720
Physical Location & Seq
Reverse (-)
34475512 .. 34476096
585 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1281500.v1.1.491

Sequence Viewer

Length: 585 bp
ATGGCCAGAAGCGATGCAGAGTCAGCCACAGACCACTCCCAAGACTTACGCAAAAAGAAACGCATCAGATGTTTAGTGTACATTGCTGTTTTCGCCGTCTTCCAGATCGTCGTTATAACGGTGTTTGCACTCACCGTGATGCGTGCCAAGAGCCCAAAGTTCCGAATTCGCTCTGTCACGATTGAAGAGCTCACTACTGACACAAACACAGCCAGCCCTTCGCTTAACTTGAGGTTCATTGCTGAAACTACCGTCAGGAATCCTAATTTCGGACTGTACAAATTTGAGGAGAGCTCCATAACCGTTGTGTATAGGGGTACAGTGATCGGCGATGTTGCTGTTCCAAAGGCAACGGCCAGGACTAGGGCAACGAGAAGGGCTACTGTGACGGGGGACGTGACAACGGCCAATTCGAACTTGGGCAATGATGTAAGTTCTGGGTTTGTGACGCTTAACACAATATCCACGCTAAGAGGAAAGGTTTATTTGATGAACATGATCAAGAAAAGTAAGTCTGCAGAGATGAACTGCACGTTCAATATTAATTTGACGGAGAAAGTGGTCCGAGAAATAAGTTGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

195

Amino Acids

21.51

Weight (kDa)

10.06

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 84 - 178 3.4e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017720)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30560
malus_domestica MD07G1281500.v1.1
rosa_chinensis RchiOBHm_Chr1g0379401
rosa_laevigata RLG00000009300 RLG00000026401
rosa_multiflora Rmu_co8197020.1_g000001 Rmu_sc0006761.1_g000011
rosa_roxburghii Rroxscaffold_4G00280190 Rroxscaffold_5G00373460
rosa_rugosa Rorug01G0411900
rosa_samantha Rh1AG434500
rosa_wichuraiana Rw1G037970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 116
AcoI YGGCCR 3 cut(s) 3, 354, 405
AcsI RAATTY 2 cut(s) 165, 281
AfaI GTAC 3 cut(s) 80, 278, 319
AfiI CCNNNNNNNGG 2 cut(s) 269, 363
AgsI TTSAA 2 cut(s) 185, 538
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 2 cut(s) 190, 294
AluI AGCT 2 cut(s) 190, 294
Alw21I GWGCWC 2 cut(s) 192, 296
AoxI GGCC 3 cut(s) 3, 354, 405
ApoI RAATTY 2 cut(s) 165, 281
AseI ATTAAT 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 562
AsuHPI GGTGA 1 cut(s) 124
AsuII TTCGAA 1 cut(s) 413
AvaII GGWCC 1 cut(s) 562
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 3 cut(s) 155, 192, 296
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 2 cut(s) 192, 296
BceAI ACGGC 3 cut(s) 80, 369, 420
BciT130I CCWGG 1 cut(s) 358
BclI TGATCA 1 cut(s) 498
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 516
Bme1390I CCNGG 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 562
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 562
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 3 cut(s) 4, 72, 129
BpiI GAAGAC 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 278, 310
Bpu14I TTCGAA 1 cut(s) 413
BpuEI CTTGAG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 363
Bse3DI GCAATG 3 cut(s) 81, 237, 430
BseBI CCWGG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 269, 363
BseMI GCAATG 3 cut(s) 81, 237, 430
BseRI GAGGAG 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 514
BshFI GGCC 3 cut(s) 5, 356, 407
BsiHKAI GWGCWC 2 cut(s) 192, 296
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 2 cut(s) 269, 363
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 3 cut(s) 5, 356, 407
Bsp119I TTCGAA 1 cut(s) 413
Bsp1286I GDGCHC 3 cut(s) 155, 192, 296
Bsp1407I TGTACA 2 cut(s) 78, 276
Bsp143I GATC 3 cut(s) 105, 324, 498
BspANI GGCC 3 cut(s) 5, 356, 407
BspMAI CTGCAG 1 cut(s) 520
BspQI GCTCTTC 1 cut(s) 180
BspT104I TTCGAA 1 cut(s) 413
BsrDI GCAATG 3 cut(s) 81, 237, 430
BsrGI TGTACA 2 cut(s) 78, 276
BssMI GATC 3 cut(s) 105, 324, 498
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 7 cut(s) 121, 136, 253, 276, 304, 322, 385
Bst6I CTCTTC 1 cut(s) 180
BstAUI TGTACA 2 cut(s) 78, 276
BstBI TTCGAA 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 144, 214
BstDEI CTNAG 1 cut(s) 470
BstKTI GATC 3 cut(s) 108, 327, 501
BstMBI GATC 3 cut(s) 105, 324, 498
BstMWI GCNNNNNNNGC 2 cut(s) 23, 92
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 516
BstV2I GAAGAC 1 cut(s) 91
BsuRI GGCC 3 cut(s) 5, 356, 407
BtgZI GCGATG 2 cut(s) 27, 345
BtrI CACGTC 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 2 cut(s) 144, 214
Cfr13I GGNCC 1 cut(s) 562
CseI GACGC 1 cut(s) 457
Csp6I GTAC 3 cut(s) 79, 277, 318
CviAII CATG 1 cut(s) 496
CviQI GTAC 3 cut(s) 79, 277, 318
DdeI CTNAG 1 cut(s) 470
DpnI GATC 3 cut(s) 107, 326, 500
DpnII GATC 3 cut(s) 105, 324, 498
EaeI YGGCCR 3 cut(s) 3, 354, 405
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Ecl136II GAGCTC 2 cut(s) 190, 294
Eco24I GRGCYC 3 cut(s) 155, 192, 296
Eco47I GGWCC 1 cut(s) 562
Eco53kI GAGCTC 2 cut(s) 190, 294
EcoICRI GAGCTC 2 cut(s) 190, 294
EcoRI GAATTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 356
EcoT38I GRGCYC 3 cut(s) 155, 192, 296
FaeI CATG 1 cut(s) 499
FaiI YATR 4 cut(s) 116, 299, 312, 497
FaqI GGGAC 1 cut(s) 407
FatI CATG 1 cut(s) 495
FbaI TGATCA 1 cut(s) 498
FriOI GRGCYC 3 cut(s) 155, 192, 296
FspBI CTAG 1 cut(s) 363
HaeIII GGCC 3 cut(s) 5, 356, 407
HgaI GACGC 1 cut(s) 457
Hin1II CATG 1 cut(s) 499
HinfI GANTC 2 cut(s) 20, 259
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 4 cut(s) 68, 164, 272, 566
Hpy188III TCNNGA 4 cut(s) 103, 178, 256, 502
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 228, 369
HpyCH4III ACNGT 7 cut(s) 121, 136, 253, 276, 304, 322, 385
HpyCH4IV ACGT 2 cut(s) 396, 533
HpyCH4V TGCA 5 cut(s) 17, 128, 518, 531, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 92
HpyF3I CTNAG 1 cut(s) 470
HpySE526I ACGT 2 cut(s) 396, 533
Hsp92II CATG 1 cut(s) 499
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 3 cut(s) 105, 324, 498
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 7 cut(s) 19, 116, 226, 241, 343, 370, 423
LweI GCATC 3 cut(s) 4, 72, 129
MaeI CTAG 1 cut(s) 363
MaeII ACGT 2 cut(s) 396, 533
MaeIII GTNAC 4 cut(s) 175, 385, 397, 445
MalI GATC 3 cut(s) 107, 326, 500
MboI GATC 3 cut(s) 105, 324, 498
MboII GAAGA 2 cut(s) 91, 197
MhlI GDGCHC 3 cut(s) 155, 192, 296
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 165, 265, 281, 409, 544
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 3 cut(s) 225, 280, 467
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 225, 453, 543
MslI CAYNNNNRTG 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 358
MvaI CCWGG 1 cut(s) 358
MwoI GCNNNNNNNGC 2 cut(s) 23, 92
NdeII GATC 3 cut(s) 105, 324, 498
NlaIII CATG 1 cut(s) 499
NmuCI GTSAC 4 cut(s) 175, 385, 397, 445
NspV TTCGAA 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 410
PfeI GAWTC 1 cut(s) 259
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 543
PsiI TTATAA 1 cut(s) 116
Psp124BI GAGCTC 2 cut(s) 192, 296
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspPI GGNCC 1 cut(s) 562
PstI CTGCAG 1 cut(s) 520
RsaI GTAC 3 cut(s) 80, 278, 319
RsaNI GTAC 3 cut(s) 79, 277, 318
RseI CAYNNNNRTG 1 cut(s) 137
SacI GAGCTC 2 cut(s) 192, 296
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 3 cut(s) 225, 453, 543
Sau3AI GATC 3 cut(s) 105, 324, 498
Sau96I GGNCC 1 cut(s) 562
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 3 cut(s) 155, 192, 296
SetI ASST 6 cut(s) 192, 236, 296, 399, 483, 536
SfaNI GCATC 3 cut(s) 4, 72, 129
SfcI CTRYAG 1 cut(s) 516
SfuI TTCGAA 1 cut(s) 413
SinI GGWCC 1 cut(s) 562
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 5 cut(s) 165, 265, 281, 409, 544
SspI AATATT 1 cut(s) 541
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 2 cut(s) 192, 296
StyD4I CCNGG 1 cut(s) 356
TaaI ACNGT 7 cut(s) 121, 136, 253, 276, 304, 322, 385
TaiI ACGT 2 cut(s) 399, 536
TaqI TCGA 1 cut(s) 413
TasI AATT 5 cut(s) 165, 265, 281, 409, 544
TatI WGTACW 2 cut(s) 78, 276
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 3 cut(s) 225, 453, 543
Tru9I TTAA 3 cut(s) 225, 453, 543
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 4 cut(s) 175, 385, 397, 445
Tsp45I GTSAC 4 cut(s) 175, 385, 397, 445
TspDTI ATGAA 3 cut(s) 226, 506, 539
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 562
VspI ATTAAT 1 cut(s) 543
XapI RAATTY 2 cut(s) 165, 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.