Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007423

Physical Location & Seq

Genomic Coordinates Reverse (-)

22741306 .. 22744782

Gene Structure 3477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGGGAAAAAAGGAAGCAGCTGGTTCTCGACGGTTAAGAAGGTTTTCAAAAATTCTTCCAAGGATTTGCCGGACAAAAAGGATCAGATTACGGATAAATGGCAGCAACATGATGCTCCGGAGGTGGTGTCGTTTGAACATTTTCCGGCAGAGAGTTCTCCGGACAGAACCAATGACGAGAGCACTGCATCAACTCCTGCGAACAATGAAGACCGGCAACATGCCATTGCCGTGGCAATGGCGACGGCTGCTGCCGCAGATGCTGCGGTAGTGGCAGCTCAAGCGGCTGCTAAAGTTGTAAGATTGGCTGGTTATGGACGTCAATACTACTCTGTGGAGGAAAGGGCTGCAACCCTCATACAGTCATTTTACAGAGGCTACCTAGCTCGACGAGCTCGACGGGCGTTGAAGGGATTGGTGAGGCTGCAAGCATTGGTGAGAGGCCATAACGTGCGGAAGCAAGCACAGATGACAATGCGATGCATGCAGGCACTAGTTCGAGTTCAAGCAAGAGTTCGAGCTCGACGAATCAAATTGACACATAACAAGCAGCAGAGTCATAAACAAACGGACAGTGATATTGATGATGAAGAAGAAAGATTAAGAGCTTTGATAGAGCTGGAAGAAGAGCATAATCTAAGAAGTCCTATGAAGAAACATGAAATGCAAACTAGGCATCAGAGAAGTGAAAGCTATTCCAAGGAAAATGCCTCGAGGAAACATGATGCTGTGGTTAAAAGGGAGAGAGCTCTTGCTTATGCTTATAGCTACCAGCAACAACAACAGCTTCTACAATCCGTTCCTCATGGTAGCGATGTTGGGCTACAGGCCAACCAGCGTGAAAAGGACCAATGGGGATGGAATTGGCTTGAGGGTTGGATGTCATCGCAACCTTACAAAGCCCGCCACTCAGGCCCACGAGACACCACTTATATGACACCGGGCACTACCACAACCACCGGCGATAACATTTCCGAGAAGACAGTAGAAATGGACTCCACGGCATTTCCAACATTGCGGAGTCATTTCAAACAAGACATGGCTAATTCTAACCCGTATTCAGCTCGACAAAACAACCCAAGCCCTGACAATGTACCTAGCTACATGACACCAACCCAATCTGCCAAGGCCAAGGTACGAGGCCAGGGCTTGGTCAAGCAACGAAGCCCTCCCACTCCCCAATGGAACCCTTCAACAAAGAAAGGATCGGTAGTTGGTTCGGGTTGTGATTCGTCAAGCTCGGGTGGAGGACCCACAAGCTACTTGATCCCAAGGAGCCCAAGCCCAAAGAGTAATGGAGTACGCGGGCAGGCGAGATTGTCATTGGGCTTTGGCCCTGATTCTCCGCATGGCGAAGATTGGGCCCTGCCTCTCGCTGTTCATGGTTGGAGACATGATTTCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

469

Amino Acids

52.31

Weight (kDa)

9.8

Isoelectric Point (pI)

60.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IQ	PF00612	114 - 131	2.7e-06	IQ calmodulin-binding motif
DUF4005	PF13178	336 - 410	1.2e-06	Protein of unknown function (DUF4005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49260 AT3G49260 AT3G49260 AT3G49260
fragaria_vesca	FvH4_7g31490 FvH4_7g31490 FvH4_7g31490 FvH4_7g31490
malus_domestica	MD01G1218100.v1.1 MD07G1288000.v1.1
prunus_persica	Prupe.2G309500_v2.0.a1 Prupe.2G309500_v2.0.a1
pyrus_communis	pycom07g26080
rosa_chinensis	RchiOBHm_Chr1g0380521
rosa_laevigata	RLG00000026288
rosa_multiflora	Rmu_ssc0000015.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279240
rosa_rugosa	Rorug01G0421900 Rorug01G0422000.1 Rorug01G0422100
rosa_samantha	Rh1AG446700 Rh1BG401900 Rh1CG416200 Rh1DG432100
rosa_wichuraiana	Rw1G038860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	322
AbsI	CCTCGAGG	1 cut(s)	712
AccB7I	CCANNNNNTGG	1 cut(s)	1150
AccII	CGCG	1 cut(s)	1305
AccIII	TCCGGA	2 cut(s)	118, 160
AciI	CCGC	8 cut(s)	255, 266, 284, 454, 904, 1018, 1305, 1346
AclWI	GGATC	3 cut(s)	90, 1213, 1261
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	319
AfaI	GTAC	3 cut(s)	1095, 1137, 1302
AfiI	CCNNNNNNNGG	1 cut(s)	1150
AgsI	TTSAA	6 cut(s)	49, 137, 409, 506, 1030, 1194
AhlI	ACTAGT	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	1143
Alw21I	GWGCWC	4 cut(s)	185, 397, 523, 751
Alw26I	GTCTC	2 cut(s)	915, 1384
AlwI	GGATC	3 cut(s)	90, 1213, 1261
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	2 cut(s)	712, 1240
Aor13HI	TCCGGA	2 cut(s)	118, 160
AoxI	GGCC	7 cut(s)	442, 828, 913, 1128, 1141, 1333, 1362
ApaI	GGGCCC	1 cut(s)	1366
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	2 cut(s)	44, 141
AspS9I	GGNCC	6 cut(s)	847, 914, 1250, 1334, 1362, 1363
AsuC2I	CCSGG	1 cut(s)	942
AsuHPI	GGTGA	2 cut(s)	430, 448
AvaI	CYCGRG	2 cut(s)	712, 1240
AvaII	GGWCC	2 cut(s)	847, 1250
BaeGI	GKGCMC	2 cut(s)	947, 1366
BanII	GRGCYC	5 cut(s)	397, 523, 751, 1280, 1366
BauI	CACGAG	1 cut(s)	918
BbsI	GAAGAC	2 cut(s)	216, 986
Bbv12I	GWGCWC	4 cut(s)	185, 397, 523, 751
BccI	CCATC	1 cut(s)	852
BceAI	ACGGC	3 cut(s)	215, 261, 1017
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	1 cut(s)	1145
BcnI	CCSGG	1 cut(s)	942
BcoDI	GTCTC	2 cut(s)	915, 1384
BcuI	ACTAGT	1 cut(s)	493
BfaI	CTAG	4 cut(s)	383, 494, 672, 1098
BfmI	CTRYAG	1 cut(s)	824
BglI	GCCNNNNNGGC	1 cut(s)	912
Bme1390I	CCNGG	2 cut(s)	942, 1145
Bme18I	GGWCC	2 cut(s)	847, 1250
BmeT110I	CYCGRG	2 cut(s)	712, 1240
BmgT120I	GGNCC	6 cut(s)	847, 914, 1250, 1334, 1362, 1363
BmiI	GGNNCC	4 cut(s)	1187, 1252, 1277, 1364
BmrFI	CCNGG	2 cut(s)	942, 1145
BmsI	GCATC	6 cut(s)	103, 197, 250, 470, 685, 715
BpiI	GAAGAC	2 cut(s)	216, 986
BpuEI	CTTGAG	2 cut(s)	264, 890
BpuMI	CCSGG	1 cut(s)	942
BsaHI	GRCGYC	1 cut(s)	319
BsaJI	CCNNGG	8 cut(s)	60, 231, 699, 999, 1125, 1131, 1144, 1271
BsaWI	WCCGGW	2 cut(s)	118, 160
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	1150
Bse118I	RCCGGY	2 cut(s)	213, 959
Bse3DI	GCAATG	3 cut(s)	225, 243, 1013
BseAI	TCCGGA	2 cut(s)	118, 160
BseBI	CCWGG	1 cut(s)	1145
BseDI	CCNNGG	8 cut(s)	60, 231, 699, 999, 1125, 1131, 1144, 1271
BseGI	GGATG	2 cut(s)	863, 885
BseLI	CCNNNNNNNGG	1 cut(s)	1150
BseMI	GCAATG	3 cut(s)	225, 243, 1013
BseMII	CTCAG	1 cut(s)	924
BseSI	GKGCMC	2 cut(s)	947, 1366
Bsh1236I	CGCG	1 cut(s)	1305
BshFI	GGCC	7 cut(s)	444, 830, 915, 1130, 1143, 1335, 1364
BsiHKAI	GWGCWC	4 cut(s)	185, 397, 523, 751
BsiHKCI	CYCGRG	2 cut(s)	712, 1240
BsiSI	CCGG	7 cut(s)	71, 119, 146, 161, 214, 941, 960
BslI	CCNNNNNNNGG	1 cut(s)	1150
BsmAI	GTCTC	2 cut(s)	915, 1384
BsnI	GGCC	7 cut(s)	444, 830, 915, 1130, 1143, 1335, 1364
BsoBI	CYCGRG	2 cut(s)	712, 1240
Bsp120I	GGGCCC	1 cut(s)	1362
Bsp1286I	GDGCHC	7 cut(s)	185, 397, 523, 751, 947, 1280, 1366
Bsp13I	TCCGGA	2 cut(s)	118, 160
Bsp143I	GATC	3 cut(s)	82, 1205, 1266
BspACI	CCGC	8 cut(s)	255, 266, 284, 454, 904, 1018, 1305, 1346
BspANI	GGCC	7 cut(s)	444, 830, 915, 1130, 1143, 1335, 1364
BspCNI	CTCAG	1 cut(s)	923
BspEI	TCCGGA	2 cut(s)	118, 160
BspFNI	CGCG	1 cut(s)	1305
BspLI	GGNNCC	4 cut(s)	1187, 1252, 1277, 1364
BspPI	GGATC	3 cut(s)	90, 1213, 1261
BspQI	GCTCTTC	1 cut(s)	621
BsrDI	GCAATG	3 cut(s)	225, 243, 1013
BsrFI	RCCGGY	2 cut(s)	213, 959
BssAI	RCCGGY	2 cut(s)	213, 959
BssECI	CCNNGG	8 cut(s)	60, 231, 699, 999, 1125, 1131, 1144, 1271
BssMI	GATC	3 cut(s)	82, 1205, 1266
BssNI	GRCGYC	1 cut(s)	319
BssSI	CACGAG	1 cut(s)	918
BssT1I	CCWWGG	5 cut(s)	60, 699, 1125, 1131, 1271
Bst2BI	CACGAG	1 cut(s)	918
Bst2UI	CCWGG	1 cut(s)	1145
Bst4CI	ACNGT	4 cut(s)	34, 363, 575, 985
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	319
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	7 cut(s)	429, 462, 485, 489, 904, 1307, 1311
BstDEI	CTNAG	2 cut(s)	638, 910
BstDSI	CCRYGG	2 cut(s)	231, 999
BstF5I	GGATG	2 cut(s)	863, 885
BstFNI	CGCG	1 cut(s)	1305
BstKTI	GATC	3 cut(s)	85, 1208, 1269
BstMAI	GTCTC	2 cut(s)	915, 1384
BstMBI	GATC	3 cut(s)	82, 1205, 1266
BstNI	CCWGG	1 cut(s)	1145
BstNSI	RCATGY	2 cut(s)	224, 487
BstSCI	CCNGG	2 cut(s)	940, 1143
BstSFI	CTRYAG	1 cut(s)	824
BstSLI	GKGCMC	2 cut(s)	947, 1366
BstUI	CGCG	1 cut(s)	1305
BstV2I	GAAGAC	2 cut(s)	216, 986
BstXI	CCANNNNNNTGG	1 cut(s)	232
BsuRI	GGCC	7 cut(s)	444, 830, 915, 1130, 1143, 1335, 1364
BtgI	CCRYGG	2 cut(s)	231, 999
BtgZI	GCGATG	3 cut(s)	493, 828, 870
BtsCI	GGATG	2 cut(s)	863, 885
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 580
Cac8I	GCNNGC	7 cut(s)	429, 462, 485, 489, 904, 1307, 1311
CaiI	CAGNNNCTG	1 cut(s)	263
Cfr10I	RCCGGY	2 cut(s)	213, 959
Cfr13I	GGNCC	6 cut(s)	847, 914, 1250, 1334, 1362, 1363
Csp6I	GTAC	3 cut(s)	1094, 1136, 1301
CviQI	GTAC	3 cut(s)	1094, 1136, 1301
DdeI	CTNAG	2 cut(s)	638, 910
DpnI	GATC	3 cut(s)	84, 1207, 1268
DpnII	GATC	3 cut(s)	82, 1205, 1266
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Ecl136II	GAGCTC	3 cut(s)	395, 521, 749
Eco130I	CCWWGG	5 cut(s)	60, 699, 1125, 1131, 1271
Eco24I	GRGCYC	5 cut(s)	397, 523, 751, 1280, 1366
Eco47I	GGWCC	2 cut(s)	847, 1250
Eco53kI	GAGCTC	3 cut(s)	395, 521, 749
Eco88I	CYCGRG	2 cut(s)	712, 1240
EcoICRI	GAGCTC	3 cut(s)	395, 521, 749
EcoO109I	RGGNCCY	2 cut(s)	1250, 1363
EcoRII	CCWGG	1 cut(s)	1143
EcoT14I	CCWWGG	5 cut(s)	60, 699, 1125, 1131, 1271
EcoT22I	ATGCAT	1 cut(s)	485
EcoT38I	GRGCYC	5 cut(s)	397, 523, 751, 1280, 1366
ErhI	CCWWGG	5 cut(s)	60, 699, 1125, 1131, 1271
FauI	CCCGC	2 cut(s)	911, 1298
FokI	GGATG	2 cut(s)	870, 892
FriOI	GRGCYC	5 cut(s)	397, 523, 751, 1280, 1366
FspBI	CTAG	4 cut(s)	383, 494, 672, 1098
HaeIII	GGCC	7 cut(s)	444, 830, 915, 1130, 1143, 1335, 1364
HapII	CCGG	7 cut(s)	71, 119, 146, 161, 214, 941, 960
Hin1I	GRCGYC	1 cut(s)	319
HinfI	GANTC	6 cut(s)	528, 556, 995, 1021, 1229, 1340
HpaII	CCGG	7 cut(s)	71, 119, 146, 161, 214, 941, 960
HphI	GGTGA	2 cut(s)	430, 448
Hpy188I	TCNGA	3 cut(s)	87, 681, 976
Hpy188III	TCNNGA	3 cut(s)	28, 119, 161
Hpy99I	CGWCG	5 cut(s)	34, 247, 393, 402, 528
HpyAV	CCTTC	3 cut(s)	34, 403, 1200
HpyCH4III	ACNGT	4 cut(s)	34, 363, 575, 985
HpyCH4IV	ACGT	2 cut(s)	319, 450
HpyCH4V	TGCA	6 cut(s)	188, 350, 427, 483, 487, 667
HpyF3I	CTNAG	2 cut(s)	638, 910
HpySE526I	ACGT	2 cut(s)	319, 450
Hsp92I	GRCGYC	1 cut(s)	319
Kpn2I	TCCGGA	2 cut(s)	118, 160
Kzo9I	GATC	3 cut(s)	82, 1205, 1266
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	2 cut(s)	121, 1275
LweI	GCATC	6 cut(s)	103, 197, 250, 470, 685, 715
MaeI	CTAG	4 cut(s)	383, 494, 672, 1098
MaeII	ACGT	2 cut(s)	319, 450
MalI	GATC	3 cut(s)	84, 1207, 1268
MboI	GATC	3 cut(s)	82, 1205, 1266
MboII	GAAGA	9 cut(s)	48, 221, 602, 605, 635, 638, 664, 991, 1367
MhlI	GDGCHC	7 cut(s)	185, 397, 523, 751, 947, 1280, 1366
MluCI	AATT	4 cut(s)	52, 533, 862, 1045
MlyI	GAGTC	3 cut(s)	565, 989, 1030
MmeI	TCCRAC	3 cut(s)	857, 1034, 1367
Mph1103I	ATGCAT	1 cut(s)	485
MroI	TCCGGA	2 cut(s)	118, 160
MroXI	GAANNNNTTC	2 cut(s)	44, 141
MseI	TTAA	3 cut(s)	36, 602, 735
MslI	CAYNNNNRTG	2 cut(s)	230, 932
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	7 cut(s)	71, 119, 146, 161, 214, 941, 960
MspR9I	CCNGG	2 cut(s)	942, 1145
MvaI	CCWGG	1 cut(s)	1145
MvnI	CGCG	1 cut(s)	1305
NciI	CCSGG	1 cut(s)	942
NdeII	GATC	3 cut(s)	82, 1205, 1266
NlaIV	GGNNCC	4 cut(s)	1187, 1252, 1277, 1364
NsiI	ATGCAT	1 cut(s)	485
NspI	RCATGY	2 cut(s)	224, 487
PaeI	GCATGC	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	712
PciSI	GCTCTTC	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	2 cut(s)	394, 523
PdmI	GAANNNNTTC	2 cut(s)	44, 141
PfeI	GAWTC	3 cut(s)	528, 1229, 1340
PflMI	CCANNNNNTGG	1 cut(s)	1150
PleI	GAGTC	3 cut(s)	564, 989, 1029
PpsI	GAGTC	3 cut(s)	564, 989, 1029
PpuMI	RGGWCCY	1 cut(s)	1250
Psp124BI	GAGCTC	3 cut(s)	397, 523, 751
Psp5II	RGGWCCY	1 cut(s)	1250
Psp6I	CCWGG	1 cut(s)	1143
PspGI	CCWGG	1 cut(s)	1143
PspN4I	GGNNCC	4 cut(s)	1187, 1252, 1277, 1364
PspOMI	GGGCCC	1 cut(s)	1362
PspPI	GGNCC	6 cut(s)	847, 914, 1250, 1334, 1362, 1363
PspPPI	RGGWCCY	1 cut(s)	1250
PspXI	VCTCGAGB	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	3 cut(s)	1095, 1137, 1302
RsaNI	GTAC	3 cut(s)	1094, 1136, 1301
RseI	CAYNNNNRTG	2 cut(s)	230, 932
SacI	GAGCTC	3 cut(s)	397, 523, 751
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	36, 602, 735
Sau3AI	GATC	3 cut(s)	82, 1205, 1266
Sau96I	GGNCC	6 cut(s)	847, 914, 1250, 1334, 1362, 1363
SchI	GAGTC	3 cut(s)	565, 989, 1030
ScrFI	CCNGG	2 cut(s)	942, 1145
SduI	GDGCHC	7 cut(s)	185, 397, 523, 751, 947, 1280, 1366
SfaNI	GCATC	6 cut(s)	103, 197, 250, 470, 685, 715
SfcI	CTRYAG	1 cut(s)	824
Sfr274I	CTCGAG	1 cut(s)	712
SgrAI	CRCCGGYG	1 cut(s)	959
SinI	GGWCC	2 cut(s)	847, 1250
SlaI	CTCGAG	1 cut(s)	712
SmiMI	CAYNNNNRTG	2 cut(s)	230, 932
SmlI	CTYRAG	3 cut(s)	279, 712, 869
SmoI	CTYRAG	3 cut(s)	279, 712, 869
SpeI	ACTAGT	1 cut(s)	493
SphI	GCATGC	1 cut(s)	487
Sse9I	AATT	4 cut(s)	52, 533, 862, 1045
SsiI	CCGC	8 cut(s)	255, 266, 284, 454, 904, 1018, 1305, 1346
SspMI	CTAG	4 cut(s)	383, 494, 672, 1098
SstI	GAGCTC	3 cut(s)	397, 523, 751
StyD4I	CCNGG	2 cut(s)	940, 1143
StyI	CCWWGG	5 cut(s)	60, 699, 1125, 1131, 1271
TaaI	ACNGT	4 cut(s)	34, 363, 575, 985
TaiI	ACGT	2 cut(s)	322, 453
TaqI	TCGA	8 cut(s)	29, 388, 397, 499, 517, 523, 713, 1066
TasI	AATT	4 cut(s)	52, 533, 862, 1045
TauI	GCSGC	2 cut(s)	257, 287
TfiI	GAWTC	3 cut(s)	528, 1229, 1340
Tru1I	TTAA	3 cut(s)	36, 602, 735
Tru9I	TTAA	3 cut(s)	36, 602, 735
TscAI	CASTG	2 cut(s)	190, 580
TspDTI	ATGAA	5 cut(s)	222, 603, 665, 675, 1370
TspGWI	ACGGA	3 cut(s)	107, 584, 787
TspRI	CASTG	2 cut(s)	190, 580
Van91I	CCANNNNNTGG	1 cut(s)	1150
VpaK11BI	GGWCC	2 cut(s)	847, 1250
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	2 cut(s)	224, 487
XhoI	CTCGAG	1 cut(s)	712
XmnI	GAANNNNTTC	2 cut(s)	44, 141
XspI	CTAG	4 cut(s)	383, 494, 672, 1098
ZraI	GACGTC	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.