IQ-DOMAIN 1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49260 AT3G49260 AT3G49260 AT3G49260 |
| fragaria_vesca | FvH4_7g31490 FvH4_7g31490 FvH4_7g31490 FvH4_7g31490 |
| malus_domestica | MD01G1218100.v1.1 MD07G1288000.v1.1 |
| prunus_persica | Prupe.2G309500_v2.0.a1 Prupe.2G309500_v2.0.a1 |
| pyrus_communis | pycom07g26080 |
| rosa_chinensis | RchiOBHm_Chr1g0380521 |
| rosa_laevigata | RLG00000026288 |
| rosa_multiflora | Rmu_ssc0000015.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00279240 |
| rosa_rugosa | Rorug01G0421900 Rorug01G0422000.1 Rorug01G0422100 |
| rosa_samantha | Rh1AG446700 Rh1BG401900 Rh1CG416200 Rh1DG432100 |
| rosa_wichuraiana | Rw1G038860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1317 |
| AccBSI | CCGCTC | 1 cut(s) | 880 |
| AccII | CGCG | 5 cut(s) | 116, 284, 396, 398, 1070 |
| AclI | AACGTT | 1 cut(s) | 453 |
| AclWI | GGATC | 2 cut(s) | 566, 1279 |
| AcoI | YGGCCR | 2 cut(s) | 315, 325 |
| AcsI | RAATTY | 2 cut(s) | 552, 821 |
| AcuI | CTGAAG | 3 cut(s) | 288, 597, 782 |
| AcyI | GRCGYC | 1 cut(s) | 697 |
| AfaI | GTAC | 1 cut(s) | 519 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 824, 1155, 1168, 1327 |
| AflIII | ACRYGT | 1 cut(s) | 1068 |
| AgsI | TTSAA | 9 cut(s) | 49, 195, 412, 709, 723, 992, 1014, 1077, 1212 |
| AjnI | CCWGG | 1 cut(s) | 384 |
| AluBI | AGCT | 9 cut(s) | 153, 275, 293, 350, 524, 611, 705, 1017, 1257 |
| AluI | AGCT | 9 cut(s) | 153, 275, 293, 350, 524, 611, 705, 1017, 1257 |
| Alw21I | GWGCWC | 3 cut(s) | 155, 526, 1259 |
| Alw26I | GTCTC | 1 cut(s) | 1402 |
| AlwI | GGATC | 2 cut(s) | 566, 1279 |
| Ama87I | CYCGRG | 4 cut(s) | 875, 1114, 1168, 1258 |
| AoxI | GGCC | 9 cut(s) | 315, 325, 852, 919, 1125, 1146, 1159, 1352, 1381 |
| ApeKI | GCWGC | 8 cut(s) | 103, 257, 260, 272, 293, 350, 400, 737 |
| ApoI | RAATTY | 2 cut(s) | 552, 821 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 44 |
| AspLEI | GCGC | 3 cut(s) | 396, 398, 400 |
| AspS9I | GGNCC | 8 cut(s) | 815, 853, 920, 1126, 1153, 1159, 1352, 1381 |
| AsuC2I | CCSGG | 2 cut(s) | 1081, 1157 |
| AsuHPI | GGTGA | 5 cut(s) | 433, 451, 943, 1353, 1382 |
| AvaI | CYCGRG | 4 cut(s) | 875, 1114, 1168, 1258 |
| AvaII | GGWCC | 2 cut(s) | 815, 1153 |
| BaeGI | GKGCMC | 1 cut(s) | 1320 |
| BanI | GGYRCC | 1 cut(s) | 1317 |
| BanII | GRGCYC | 5 cut(s) | 155, 526, 760, 831, 1259 |
| BauI | CACGAG | 1 cut(s) | 924 |
| BbsI | GAAGAC | 2 cut(s) | 37, 989 |
| Bbv12I | GWGCWC | 3 cut(s) | 155, 526, 1259 |
| BbvI | GCAGC | 8 cut(s) | 115, 244, 247, 280, 284, 337, 387, 724 |
| BccI | CCATC | 4 cut(s) | 806, 858, 909, 956 |
| BceAI | ACGGC | 2 cut(s) | 312, 545 |
| BciT130I | CCWGG | 1 cut(s) | 386 |
| BcnI | CCSGG | 2 cut(s) | 1081, 1157 |
| BcoDI | GTCTC | 1 cut(s) | 1402 |
| BfaI | CTAG | 2 cut(s) | 336, 1332 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 918 |
| Bme1390I | CCNGG | 3 cut(s) | 386, 1081, 1157 |
| Bme18I | GGWCC | 2 cut(s) | 815, 1153 |
| BmeT110I | CYCGRG | 4 cut(s) | 875, 1114, 1168, 1258 |
| BmgT120I | GGNCC | 8 cut(s) | 815, 853, 920, 1126, 1153, 1159, 1352, 1381 |
| BmiI | GGNNCC | 6 cut(s) | 830, 1128, 1160, 1205, 1319, 1382 |
| BmrFI | CCNGG | 3 cut(s) | 386, 1081, 1157 |
| BmsI | GCATC | 5 cut(s) | 100, 468, 473, 697, 724 |
| BpiI | GAAGAC | 2 cut(s) | 37, 989 |
| BpmI | CTGGAG | 1 cut(s) | 815 |
| BpuMI | CCSGG | 2 cut(s) | 1081, 1157 |
| BsaHI | GRCGYC | 1 cut(s) | 697 |
| BsaJI | CCNNGG | 8 cut(s) | 114, 282, 1143, 1149, 1156, 1162, 1321, 1366 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 110, 140 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 824, 1155, 1168, 1327 |
| Bse118I | RCCGGY | 1 cut(s) | 317 |
| Bse1I | ACTGG | 1 cut(s) | 804 |
| Bse3DI | GCAATG | 2 cut(s) | 234, 999 |
| BseBI | CCWGG | 1 cut(s) | 386 |
| BseDI | CCNNGG | 8 cut(s) | 114, 282, 1143, 1149, 1156, 1162, 1321, 1366 |
| BseGI | GGATG | 3 cut(s) | 574, 869, 891 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 824, 1155, 1168, 1327 |
| BseMI | GCAATG | 2 cut(s) | 234, 999 |
| BseMII | CTCAG | 1 cut(s) | 930 |
| BseNI | ACTGG | 1 cut(s) | 804 |
| BsePI | GCGCGC | 2 cut(s) | 394, 396 |
| BseRI | GAGGAG | 3 cut(s) | 19, 189, 1185 |
| BseSI | GKGCMC | 1 cut(s) | 1320 |
| BseXI | GCAGC | 8 cut(s) | 115, 244, 247, 280, 284, 337, 387, 724 |
| Bsh1236I | CGCG | 5 cut(s) | 116, 284, 396, 398, 1070 |
| BshFI | GGCC | 9 cut(s) | 317, 327, 854, 921, 1127, 1148, 1161, 1354, 1383 |
| BshNI | GGYRCC | 1 cut(s) | 1317 |
| BsiHKAI | GWGCWC | 3 cut(s) | 155, 526, 1259 |
| BsiHKCI | CYCGRG | 4 cut(s) | 875, 1114, 1168, 1258 |
| BsiSI | CCGG | 4 cut(s) | 158, 318, 1081, 1156 |
| BslFI | GGGAC | 3 cut(s) | 792, 1097, 1282 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 824, 1155, 1168, 1327 |
| BsmAI | GTCTC | 1 cut(s) | 1402 |
| BsmFI | GGGAC | 3 cut(s) | 792, 1097, 1282 |
| BsnI | GGCC | 9 cut(s) | 317, 327, 854, 921, 1127, 1148, 1161, 1354, 1383 |
| BsoBI | CYCGRG | 4 cut(s) | 875, 1114, 1168, 1258 |
| Bsp1286I | GDGCHC | 6 cut(s) | 155, 526, 760, 831, 1259, 1320 |
| Bsp143I | GATC | 3 cut(s) | 87, 571, 1284 |
| BspANI | GGCC | 9 cut(s) | 317, 327, 854, 921, 1127, 1148, 1161, 1354, 1383 |
| BspCNI | CTCAG | 1 cut(s) | 929 |
| BspFNI | CGCG | 5 cut(s) | 116, 284, 396, 398, 1070 |
| BspLI | GGNNCC | 6 cut(s) | 830, 1128, 1160, 1205, 1319, 1382 |
| BspPI | GGATC | 2 cut(s) | 566, 1279 |
| BspQI | GCTCTTC | 2 cut(s) | 601, 621 |
| BspT107I | GGYRCC | 1 cut(s) | 1317 |
| BsrBI | CCGCTC | 1 cut(s) | 880 |
| BsrDI | GCAATG | 2 cut(s) | 234, 999 |
| BsrFI | RCCGGY | 1 cut(s) | 317 |
| BsrI | ACTGG | 1 cut(s) | 804 |
| BssAI | RCCGGY | 1 cut(s) | 317 |
| BssECI | CCNNGG | 8 cut(s) | 114, 282, 1143, 1149, 1156, 1162, 1321, 1366 |
| BssHII | GCGCGC | 2 cut(s) | 394, 396 |
| BssMI | GATC | 3 cut(s) | 87, 571, 1284 |
| BssNI | GRCGYC | 1 cut(s) | 697 |
| BssSI | CACGAG | 1 cut(s) | 924 |
| BssT1I | CCWWGG | 3 cut(s) | 1143, 1149, 1162 |
| Bst2BI | CACGAG | 1 cut(s) | 924 |
| Bst2UI | CCWGG | 1 cut(s) | 386 |
| Bst4CI | ACNGT | 4 cut(s) | 988, 1322, 1370, 1403 |
| Bst6I | CTCTTC | 3 cut(s) | 591, 601, 621 |
| BstACI | GRCGYC | 1 cut(s) | 697 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 257, 278, 293 |
| BstDEI | CTNAG | 2 cut(s) | 60, 916 |
| BstDSI | CCRYGG | 4 cut(s) | 114, 282, 1321, 1366 |
| BstF5I | GGATG | 3 cut(s) | 574, 869, 891 |
| BstFNI | CGCG | 5 cut(s) | 116, 284, 396, 398, 1070 |
| BstHHI | GCGC | 3 cut(s) | 396, 398, 400 |
| BstKTI | GATC | 3 cut(s) | 90, 574, 1287 |
| BstMAI | GTCTC | 1 cut(s) | 1402 |
| BstMBI | GATC | 3 cut(s) | 87, 571, 1284 |
| BstNI | CCWGG | 1 cut(s) | 386 |
| BstNSI | RCATGY | 1 cut(s) | 490 |
| BstSCI | CCNGG | 3 cut(s) | 384, 1079, 1155 |
| BstSLI | GKGCMC | 1 cut(s) | 1320 |
| BstUI | CGCG | 5 cut(s) | 116, 284, 396, 398, 1070 |
| BstV1I | GCAGC | 8 cut(s) | 115, 244, 247, 280, 284, 337, 387, 724 |
| BstV2I | GAAGAC | 2 cut(s) | 37, 989 |
| BsuRI | GGCC | 9 cut(s) | 317, 327, 854, 921, 1127, 1148, 1161, 1354, 1383 |
| BtgI | CCRYGG | 4 cut(s) | 114, 282, 1321, 1366 |
| BtgZI | GCGATG | 2 cut(s) | 496, 876 |
| BtsCI | GGATG | 3 cut(s) | 574, 869, 891 |
| BtsI | GCAGTG | 1 cut(s) | 960 |
| BtsIMutI | CAGTG | 1 cut(s) | 960 |
| CfoI | GCGC | 3 cut(s) | 396, 398, 400 |
| Cfr10I | RCCGGY | 1 cut(s) | 317 |
| Cfr13I | GGNCC | 8 cut(s) | 815, 853, 920, 1126, 1153, 1159, 1352, 1381 |
| Cfr42I | CCGCGG | 2 cut(s) | 117, 285 |
| CseI | GACGC | 2 cut(s) | 686, 1076 |
| Csp6I | GTAC | 1 cut(s) | 518 |
| CviAII | CATG | 8 cut(s) | 107, 230, 487, 731, 1025, 1054, 1123, 1412 |
| CviQI | GTAC | 1 cut(s) | 518 |
| DdeI | CTNAG | 2 cut(s) | 60, 916 |
| DpnI | GATC | 3 cut(s) | 89, 573, 1286 |
| DpnII | GATC | 3 cut(s) | 87, 571, 1284 |
| EaeI | YGGCCR | 2 cut(s) | 315, 325 |
| Eam1104I | CTCTTC | 3 cut(s) | 591, 601, 621 |
| EarI | CTCTTC | 3 cut(s) | 591, 601, 621 |
| Ecl136II | GAGCTC | 3 cut(s) | 153, 524, 1257 |
| Eco130I | CCWWGG | 3 cut(s) | 1143, 1149, 1162 |
| Eco24I | GRGCYC | 5 cut(s) | 155, 526, 760, 831, 1259 |
| Eco47I | GGWCC | 2 cut(s) | 815, 1153 |
| Eco53kI | GAGCTC | 3 cut(s) | 153, 524, 1257 |
| Eco57I | CTGAAG | 3 cut(s) | 288, 597, 782 |
| Eco88I | CYCGRG | 4 cut(s) | 875, 1114, 1168, 1258 |
| EcoICRI | GAGCTC | 3 cut(s) | 153, 524, 1257 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1381 |
| EcoRII | CCWGG | 1 cut(s) | 384 |
| EcoT14I | CCWWGG | 3 cut(s) | 1143, 1149, 1162 |
| EcoT22I | ATGCAT | 1 cut(s) | 488 |
| EcoT38I | GRGCYC | 5 cut(s) | 155, 526, 760, 831, 1259 |
| ErhI | CCWWGG | 3 cut(s) | 1143, 1149, 1162 |
| FaeI | CATG | 8 cut(s) | 110, 233, 490, 734, 1028, 1057, 1126, 1415 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 29, 61, 595, 627 |
| FaqI | GGGAC | 3 cut(s) | 792, 1097, 1282 |
| FatI | CATG | 8 cut(s) | 106, 229, 486, 730, 1024, 1053, 1122, 1411 |
| FokI | GGATG | 3 cut(s) | 581, 876, 898 |
| FriOI | GRGCYC | 5 cut(s) | 155, 526, 760, 831, 1259 |
| FspBI | CTAG | 2 cut(s) | 336, 1332 |
| GlaI | GCGC | 3 cut(s) | 395, 397, 399 |
| GsuI | CTGGAG | 1 cut(s) | 815 |
| HaeIII | GGCC | 9 cut(s) | 317, 327, 854, 921, 1127, 1148, 1161, 1354, 1383 |
| HapII | CCGG | 4 cut(s) | 158, 318, 1081, 1156 |
| HgaI | GACGC | 2 cut(s) | 686, 1076 |
| HhaI | GCGC | 3 cut(s) | 396, 398, 400 |
| Hin1I | GRCGYC | 1 cut(s) | 697 |
| Hin1II | CATG | 8 cut(s) | 110, 233, 490, 734, 1028, 1057, 1126, 1415 |
| Hin6I | GCGC | 3 cut(s) | 394, 396, 398 |
| HinP1I | GCGC | 3 cut(s) | 394, 396, 398 |
| HinfI | GANTC | 7 cut(s) | 65, 188, 643, 1041, 1061, 1247, 1358 |
| HpaII | CCGG | 4 cut(s) | 158, 318, 1081, 1156 |
| HphI | GGTGA | 5 cut(s) | 433, 451, 943, 1353, 1382 |
| Hpy166II | GTNNAC | 1 cut(s) | 1399 |
| Hpy188I | TCNGA | 5 cut(s) | 204, 311, 459, 979, 1066 |
| Hpy188III | TCNNGA | 6 cut(s) | 218, 575, 809, 905, 1049, 1114 |
| Hpy8I | GTNNAC | 1 cut(s) | 1399 |
| Hpy99I | CGWCG | 2 cut(s) | 531, 1255 |
| HpyAV | CCTTC | 5 cut(s) | 76, 406, 1020, 1213, 1218 |
| HpyCH4III | ACNGT | 4 cut(s) | 988, 1322, 1370, 1403 |
| HpyCH4IV | ACGT | 3 cut(s) | 162, 453, 1110 |
| HpyCH4V | TGCA | 6 cut(s) | 251, 353, 486, 490, 508, 667 |
| HpyF3I | CTNAG | 2 cut(s) | 60, 916 |
| HpySE526I | ACGT | 3 cut(s) | 162, 453, 1110 |
| Hsp92I | GRCGYC | 1 cut(s) | 697 |
| Hsp92II | CATG | 8 cut(s) | 110, 233, 490, 734, 1028, 1057, 1126, 1415 |
| HspAI | GCGC | 3 cut(s) | 394, 396, 398 |
| KspI | CCGCGG | 2 cut(s) | 117, 285 |
| Kzo9I | GATC | 3 cut(s) | 87, 571, 1284 |
| LguI | GCTCTTC | 2 cut(s) | 601, 621 |
| LmnI | GCTCC | 1 cut(s) | 834 |
| Lsp1109I | GCAGC | 8 cut(s) | 115, 244, 247, 280, 284, 337, 387, 724 |
| LweI | GCATC | 5 cut(s) | 100, 468, 473, 697, 724 |
| MaeI | CTAG | 2 cut(s) | 336, 1332 |
| MaeII | ACGT | 3 cut(s) | 162, 453, 1110 |
| MaeIII | GTNAC | 3 cut(s) | 163, 329, 1118 |
| MalI | GATC | 3 cut(s) | 89, 573, 1286 |
| MbiI | CCGCTC | 1 cut(s) | 880 |
| MboI | GATC | 3 cut(s) | 87, 571, 1284 |
| MhlI | GDGCHC | 6 cut(s) | 155, 526, 760, 831, 1259, 1320 |
| MluCI | AATT | 4 cut(s) | 536, 552, 821, 868 |
| MluI | ACGCGT | 1 cut(s) | 1068 |
| MlyI | GAGTC | 4 cut(s) | 59, 652, 1035, 1352 |
| MmeI | TCCRAC | 1 cut(s) | 1385 |
| Mph1103I | ATGCAT | 1 cut(s) | 488 |
| MroXI | GAANNNNTTC | 1 cut(s) | 44 |
| MseI | TTAA | 3 cut(s) | 36, 539, 614 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1371 |
| MspA1I | CMGCKG | 5 cut(s) | 116, 146, 266, 275, 284 |
| MspI | CCGG | 4 cut(s) | 158, 318, 1081, 1156 |
| MspR9I | CCNGG | 3 cut(s) | 386, 1081, 1157 |
| MvaI | CCWGG | 1 cut(s) | 386 |
| MvnI | CGCG | 5 cut(s) | 116, 284, 396, 398, 1070 |
| NciI | CCSGG | 2 cut(s) | 1081, 1157 |
| NdeII | GATC | 3 cut(s) | 87, 571, 1284 |
| NlaIII | CATG | 8 cut(s) | 110, 233, 490, 734, 1028, 1057, 1126, 1415 |
| NlaIV | GGNNCC | 6 cut(s) | 830, 1128, 1160, 1205, 1319, 1382 |
| NmeAIII | GCCGAG | 1 cut(s) | 370 |
| NmuCI | GTSAC | 1 cut(s) | 329 |
| NsiI | ATGCAT | 1 cut(s) | 488 |
| NspI | RCATGY | 1 cut(s) | 490 |
| PaeI | GCATGC | 1 cut(s) | 490 |
| PaeR7I | CTCGAG | 1 cut(s) | 875 |
| PauI | GCGCGC | 2 cut(s) | 394, 396 |
| PciSI | GCTCTTC | 2 cut(s) | 601, 621 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 168 |
| PdmI | GAANNNNTTC | 1 cut(s) | 44 |
| PfeI | GAWTC | 3 cut(s) | 188, 1061, 1247 |
| PleI | GAGTC | 4 cut(s) | 59, 651, 1035, 1352 |
| PpsI | GAGTC | 4 cut(s) | 59, 651, 1035, 1352 |
| Psp124BI | GAGCTC | 3 cut(s) | 155, 526, 1259 |
| Psp1406I | AACGTT | 1 cut(s) | 453 |
| Psp6I | CCWGG | 1 cut(s) | 384 |
| PspGI | CCWGG | 1 cut(s) | 384 |
| PspN4I | GGNNCC | 6 cut(s) | 830, 1128, 1160, 1205, 1319, 1382 |
| PspPI | GGNCC | 8 cut(s) | 815, 853, 920, 1126, 1153, 1159, 1352, 1381 |
| PspXI | VCTCGAGB | 1 cut(s) | 875 |
| PteI | GCGCGC | 2 cut(s) | 394, 396 |
| PvuII | CAGCTG | 1 cut(s) | 275 |
| RsaI | GTAC | 1 cut(s) | 519 |
| RsaNI | GTAC | 1 cut(s) | 518 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1371 |
| SacI | GAGCTC | 3 cut(s) | 155, 526, 1259 |
| SacII | CCGCGG | 2 cut(s) | 117, 285 |
| SapI | GCTCTTC | 2 cut(s) | 601, 621 |
| SaqAI | TTAA | 3 cut(s) | 36, 539, 614 |
| Sau3AI | GATC | 3 cut(s) | 87, 571, 1284 |
| Sau96I | GGNCC | 8 cut(s) | 815, 853, 920, 1126, 1153, 1159, 1352, 1381 |
| SchI | GAGTC | 4 cut(s) | 59, 652, 1035, 1352 |
| ScrFI | CCNGG | 3 cut(s) | 386, 1081, 1157 |
| SduI | GDGCHC | 6 cut(s) | 155, 526, 760, 831, 1259, 1320 |
| SfaNI | GCATC | 5 cut(s) | 100, 468, 473, 697, 724 |
| Sfr274I | CTCGAG | 1 cut(s) | 875 |
| Sfr303I | CCGCGG | 2 cut(s) | 117, 285 |
| SgrBI | CCGCGG | 2 cut(s) | 117, 285 |
| SinI | GGWCC | 2 cut(s) | 815, 1153 |
| SlaI | CTCGAG | 1 cut(s) | 875 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1371 |
| SmlI | CTYRAG | 1 cut(s) | 875 |
| SmoI | CTYRAG | 1 cut(s) | 875 |
| SphI | GCATGC | 1 cut(s) | 490 |
| Sse9I | AATT | 4 cut(s) | 536, 552, 821, 868 |
| SspMI | CTAG | 2 cut(s) | 336, 1332 |
| SstI | GAGCTC | 3 cut(s) | 155, 526, 1259 |
| StyD4I | CCNGG | 3 cut(s) | 384, 1079, 1155 |
| StyI | CCWWGG | 3 cut(s) | 1143, 1149, 1162 |
| TaaI | ACNGT | 4 cut(s) | 988, 1322, 1370, 1403 |
| TaiI | ACGT | 3 cut(s) | 165, 456, 1113 |
| TaqI | TCGA | 5 cut(s) | 526, 534, 876, 1103, 1253 |
| TasI | AATT | 4 cut(s) | 536, 552, 821, 868 |
| TauI | GCSGC | 8 cut(s) | 21, 116, 266, 284, 287, 299, 1007, 1390 |
| TfiI | GAWTC | 3 cut(s) | 188, 1061, 1247 |
| Tru1I | TTAA | 3 cut(s) | 36, 539, 614 |
| Tru9I | TTAA | 3 cut(s) | 36, 539, 614 |
| TscAI | CASTG | 1 cut(s) | 967 |
| TseFI | GTSAC | 1 cut(s) | 329 |
| TseI | GCWGC | 8 cut(s) | 103, 257, 260, 272, 293, 350, 400, 737 |
| Tsp45I | GTSAC | 1 cut(s) | 329 |
| TspDTI | ATGAA | 3 cut(s) | 349, 603, 609 |
| TspGWI | ACGGA | 2 cut(s) | 22, 954 |
| TspRI | CASTG | 1 cut(s) | 967 |
| VpaK11BI | GGWCC | 2 cut(s) | 815, 1153 |
| XapI | RAATTY | 2 cut(s) | 552, 821 |
| XceI | RCATGY | 1 cut(s) | 490 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1197 |
| XhoI | CTCGAG | 1 cut(s) | 875 |
| XmnI | GAANNNNTTC | 1 cut(s) | 44 |
| XspI | CTAG | 2 cut(s) | 336, 1332 |
| Zsp2I | ATGCAT | 1 cut(s) | 488 |