MD07G1288000.v1.1

IQ-DOMAIN 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
34921599 .. 34924813
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1288000.v1.1.491

Sequence Viewer

Length: 1425 bp
ATGGGGAAGAAAGGAAGCGGCTGGTTCTCCTCCGTTAAGAAAGTCTTCAAACATTCTTCTAAGGACTCGCCCGACAAAAAGAAGGAGATCGGGGAGAAATGGCAGCATGATGCCGCGGAGGTGGTGTCATTTGAGCATTTTCCAGCGGAGAGCTCGCCGGACGTAACGAACGATGAGAGAGCAACCGAATCTTCAACTCCTCTGAATAATGGTCATCAAGATAGAAGCCATGCCATTGCTGTTGCTGTTGCAACTGCTGCTGCCGCTGAAGCAGCTGTTGCCGCGGCACAAGCTGCCGCTAAAGTTGTCCGATTGGCCGGTTATGGCCGTCACTCTAGGGAAGAACGAGCTGCAATCTTCATTCAGTCATATTACAGAGGCTACCTGGCTCGGCGCGCGCTGCGTGCGTTGAAGGGATTGGTGAGGCTACAAGCATTGGTGAGAGGGAATAACGTTCGGAAGCAAGCACAAATGACGATGCGATGCATGCAGGCATTAGTGCGTGTGCAAGCAAGAGTACGAGCTCGACGGCTCGAATTAACCAAAGACAAAATTCACAAAAAGGAGGATGATCCTGAAGATTACGATGAAGATGAAGAGGAAAGAAGAGCTTTAATGGAGGAAGAAGAGCAAAAGTCAAAGAGTCCTCTAAAAAAATACGAAATGCAAAGTGCGAATGGGAGTAGGCATCAAAGGCGTCATAGCTTCAAGGAAAATGCTTCAAGGAAGCATGATGCTGCGGTCAAAAGAGAGAGGGCTCTCGCTTATGCTTATAGTTATCAAAGACAACAACTTCTTCAGTCCAGTCCCGATGGACCTGAATTTGGGCTCCAGCCCAATATGCCTGATAAGGCCCAATGGGGATGGAATTGGCTCGAGCGGTGGATGTCATCGCAACCCCATCAAGACCGCCACTCAGGCCCACGAGATACCTCTTACGGAACACCCATCACCACTACCACTGCCAGCGATAACTCCGAGAAGACAGTTGAAATGGACATTGCCGCACCTTCAAGCTCGCCTCATGTCAATATGAGCCGACTCAATCCAGACATGATTGATTCAGACGCGTATTCAACCCGGCAACAACGCCAGCAAGGGTCGAATAACGTCCCGAGTTACATGGCCCCGACCAAATCTGCCAAGGCCAAGGTCCGGGGCCAAGGCTCGGGCAAGCAGATTAGCCCCCCAACTCCTCAATGGAACCCTTCAACGAGGAAGGGGTCGGTTGTTGGGTCAGGGTGTGATTCGTCGAGCTCGGGTGGAGGGACAACAAACTACCTGATCCCAAGAAGCCCAAGCCCGAAAAGTAGTGGGCACCGTGGGCTGGCTAGAGGGGCTGTGGGCTTTGGGCCTGACTCACCCCACGGTGATGATTGGGGCCTGCCGCTTGCTGTTCACAGTTGGAGACATGATTTCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

52.6

Weight (kDa)

9.66

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IQ PF00612 115 - 135 2.7e-06 IQ calmodulin-binding motif
DUF4005 PF13178 336 - 414 2.1e-06 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1317
AccBSI CCGCTC 1 cut(s) 880
AccII CGCG 5 cut(s) 116, 284, 396, 398, 1070
AclI AACGTT 1 cut(s) 453
AclWI GGATC 2 cut(s) 566, 1279
AcoI YGGCCR 2 cut(s) 315, 325
AcsI RAATTY 2 cut(s) 552, 821
AcuI CTGAAG 3 cut(s) 288, 597, 782
AcyI GRCGYC 1 cut(s) 697
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 4 cut(s) 824, 1155, 1168, 1327
AflIII ACRYGT 1 cut(s) 1068
AgsI TTSAA 9 cut(s) 49, 195, 412, 709, 723, 992, 1014, 1077, 1212
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 9 cut(s) 153, 275, 293, 350, 524, 611, 705, 1017, 1257
AluI AGCT 9 cut(s) 153, 275, 293, 350, 524, 611, 705, 1017, 1257
Alw21I GWGCWC 3 cut(s) 155, 526, 1259
Alw26I GTCTC 1 cut(s) 1402
AlwI GGATC 2 cut(s) 566, 1279
Ama87I CYCGRG 4 cut(s) 875, 1114, 1168, 1258
AoxI GGCC 9 cut(s) 315, 325, 852, 919, 1125, 1146, 1159, 1352, 1381
ApeKI GCWGC 8 cut(s) 103, 257, 260, 272, 293, 350, 400, 737
ApoI RAATTY 2 cut(s) 552, 821
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 3 cut(s) 396, 398, 400
AspS9I GGNCC 8 cut(s) 815, 853, 920, 1126, 1153, 1159, 1352, 1381
AsuC2I CCSGG 2 cut(s) 1081, 1157
AsuHPI GGTGA 5 cut(s) 433, 451, 943, 1353, 1382
AvaI CYCGRG 4 cut(s) 875, 1114, 1168, 1258
AvaII GGWCC 2 cut(s) 815, 1153
BaeGI GKGCMC 1 cut(s) 1320
BanI GGYRCC 1 cut(s) 1317
BanII GRGCYC 5 cut(s) 155, 526, 760, 831, 1259
BauI CACGAG 1 cut(s) 924
BbsI GAAGAC 2 cut(s) 37, 989
Bbv12I GWGCWC 3 cut(s) 155, 526, 1259
BbvI GCAGC 8 cut(s) 115, 244, 247, 280, 284, 337, 387, 724
BccI CCATC 4 cut(s) 806, 858, 909, 956
BceAI ACGGC 2 cut(s) 312, 545
BciT130I CCWGG 1 cut(s) 386
BcnI CCSGG 2 cut(s) 1081, 1157
BcoDI GTCTC 1 cut(s) 1402
BfaI CTAG 2 cut(s) 336, 1332
BglI GCCNNNNNGGC 1 cut(s) 918
Bme1390I CCNGG 3 cut(s) 386, 1081, 1157
Bme18I GGWCC 2 cut(s) 815, 1153
BmeT110I CYCGRG 4 cut(s) 875, 1114, 1168, 1258
BmgT120I GGNCC 8 cut(s) 815, 853, 920, 1126, 1153, 1159, 1352, 1381
BmiI GGNNCC 6 cut(s) 830, 1128, 1160, 1205, 1319, 1382
BmrFI CCNGG 3 cut(s) 386, 1081, 1157
BmsI GCATC 5 cut(s) 100, 468, 473, 697, 724
BpiI GAAGAC 2 cut(s) 37, 989
BpmI CTGGAG 1 cut(s) 815
BpuMI CCSGG 2 cut(s) 1081, 1157
BsaHI GRCGYC 1 cut(s) 697
BsaJI CCNNGG 8 cut(s) 114, 282, 1143, 1149, 1156, 1162, 1321, 1366
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 4 cut(s) 824, 1155, 1168, 1327
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 804
Bse3DI GCAATG 2 cut(s) 234, 999
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 8 cut(s) 114, 282, 1143, 1149, 1156, 1162, 1321, 1366
BseGI GGATG 3 cut(s) 574, 869, 891
BseLI CCNNNNNNNGG 4 cut(s) 824, 1155, 1168, 1327
BseMI GCAATG 2 cut(s) 234, 999
BseMII CTCAG 1 cut(s) 930
BseNI ACTGG 1 cut(s) 804
BsePI GCGCGC 2 cut(s) 394, 396
BseRI GAGGAG 3 cut(s) 19, 189, 1185
BseSI GKGCMC 1 cut(s) 1320
BseXI GCAGC 8 cut(s) 115, 244, 247, 280, 284, 337, 387, 724
Bsh1236I CGCG 5 cut(s) 116, 284, 396, 398, 1070
BshFI GGCC 9 cut(s) 317, 327, 854, 921, 1127, 1148, 1161, 1354, 1383
BshNI GGYRCC 1 cut(s) 1317
BsiHKAI GWGCWC 3 cut(s) 155, 526, 1259
BsiHKCI CYCGRG 4 cut(s) 875, 1114, 1168, 1258
BsiSI CCGG 4 cut(s) 158, 318, 1081, 1156
BslFI GGGAC 3 cut(s) 792, 1097, 1282
BslI CCNNNNNNNGG 4 cut(s) 824, 1155, 1168, 1327
BsmAI GTCTC 1 cut(s) 1402
BsmFI GGGAC 3 cut(s) 792, 1097, 1282
BsnI GGCC 9 cut(s) 317, 327, 854, 921, 1127, 1148, 1161, 1354, 1383
BsoBI CYCGRG 4 cut(s) 875, 1114, 1168, 1258
Bsp1286I GDGCHC 6 cut(s) 155, 526, 760, 831, 1259, 1320
Bsp143I GATC 3 cut(s) 87, 571, 1284
BspANI GGCC 9 cut(s) 317, 327, 854, 921, 1127, 1148, 1161, 1354, 1383
BspCNI CTCAG 1 cut(s) 929
BspFNI CGCG 5 cut(s) 116, 284, 396, 398, 1070
BspLI GGNNCC 6 cut(s) 830, 1128, 1160, 1205, 1319, 1382
BspPI GGATC 2 cut(s) 566, 1279
BspQI GCTCTTC 2 cut(s) 601, 621
BspT107I GGYRCC 1 cut(s) 1317
BsrBI CCGCTC 1 cut(s) 880
BsrDI GCAATG 2 cut(s) 234, 999
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 1 cut(s) 804
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 8 cut(s) 114, 282, 1143, 1149, 1156, 1162, 1321, 1366
BssHII GCGCGC 2 cut(s) 394, 396
BssMI GATC 3 cut(s) 87, 571, 1284
BssNI GRCGYC 1 cut(s) 697
BssSI CACGAG 1 cut(s) 924
BssT1I CCWWGG 3 cut(s) 1143, 1149, 1162
Bst2BI CACGAG 1 cut(s) 924
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 4 cut(s) 988, 1322, 1370, 1403
Bst6I CTCTTC 3 cut(s) 591, 601, 621
BstACI GRCGYC 1 cut(s) 697
BstAPI GCANNNNNTGC 3 cut(s) 257, 278, 293
BstDEI CTNAG 2 cut(s) 60, 916
BstDSI CCRYGG 4 cut(s) 114, 282, 1321, 1366
BstF5I GGATG 3 cut(s) 574, 869, 891
BstFNI CGCG 5 cut(s) 116, 284, 396, 398, 1070
BstHHI GCGC 3 cut(s) 396, 398, 400
BstKTI GATC 3 cut(s) 90, 574, 1287
BstMAI GTCTC 1 cut(s) 1402
BstMBI GATC 3 cut(s) 87, 571, 1284
BstNI CCWGG 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 3 cut(s) 384, 1079, 1155
BstSLI GKGCMC 1 cut(s) 1320
BstUI CGCG 5 cut(s) 116, 284, 396, 398, 1070
BstV1I GCAGC 8 cut(s) 115, 244, 247, 280, 284, 337, 387, 724
BstV2I GAAGAC 2 cut(s) 37, 989
BsuRI GGCC 9 cut(s) 317, 327, 854, 921, 1127, 1148, 1161, 1354, 1383
BtgI CCRYGG 4 cut(s) 114, 282, 1321, 1366
BtgZI GCGATG 2 cut(s) 496, 876
BtsCI GGATG 3 cut(s) 574, 869, 891
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 1 cut(s) 960
CfoI GCGC 3 cut(s) 396, 398, 400
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 8 cut(s) 815, 853, 920, 1126, 1153, 1159, 1352, 1381
Cfr42I CCGCGG 2 cut(s) 117, 285
CseI GACGC 2 cut(s) 686, 1076
Csp6I GTAC 1 cut(s) 518
CviAII CATG 8 cut(s) 107, 230, 487, 731, 1025, 1054, 1123, 1412
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 2 cut(s) 60, 916
DpnI GATC 3 cut(s) 89, 573, 1286
DpnII GATC 3 cut(s) 87, 571, 1284
EaeI YGGCCR 2 cut(s) 315, 325
Eam1104I CTCTTC 3 cut(s) 591, 601, 621
EarI CTCTTC 3 cut(s) 591, 601, 621
Ecl136II GAGCTC 3 cut(s) 153, 524, 1257
Eco130I CCWWGG 3 cut(s) 1143, 1149, 1162
Eco24I GRGCYC 5 cut(s) 155, 526, 760, 831, 1259
Eco47I GGWCC 2 cut(s) 815, 1153
Eco53kI GAGCTC 3 cut(s) 153, 524, 1257
Eco57I CTGAAG 3 cut(s) 288, 597, 782
Eco88I CYCGRG 4 cut(s) 875, 1114, 1168, 1258
EcoICRI GAGCTC 3 cut(s) 153, 524, 1257
EcoO109I RGGNCCY 1 cut(s) 1381
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 3 cut(s) 1143, 1149, 1162
EcoT22I ATGCAT 1 cut(s) 488
EcoT38I GRGCYC 5 cut(s) 155, 526, 760, 831, 1259
ErhI CCWWGG 3 cut(s) 1143, 1149, 1162
FaeI CATG 8 cut(s) 110, 233, 490, 734, 1028, 1057, 1126, 1415
FalI AAGNNNNNCTT 4 cut(s) 29, 61, 595, 627
FaqI GGGAC 3 cut(s) 792, 1097, 1282
FatI CATG 8 cut(s) 106, 229, 486, 730, 1024, 1053, 1122, 1411
FokI GGATG 3 cut(s) 581, 876, 898
FriOI GRGCYC 5 cut(s) 155, 526, 760, 831, 1259
FspBI CTAG 2 cut(s) 336, 1332
GlaI GCGC 3 cut(s) 395, 397, 399
GsuI CTGGAG 1 cut(s) 815
HaeIII GGCC 9 cut(s) 317, 327, 854, 921, 1127, 1148, 1161, 1354, 1383
HapII CCGG 4 cut(s) 158, 318, 1081, 1156
HgaI GACGC 2 cut(s) 686, 1076
HhaI GCGC 3 cut(s) 396, 398, 400
Hin1I GRCGYC 1 cut(s) 697
Hin1II CATG 8 cut(s) 110, 233, 490, 734, 1028, 1057, 1126, 1415
Hin6I GCGC 3 cut(s) 394, 396, 398
HinP1I GCGC 3 cut(s) 394, 396, 398
HinfI GANTC 7 cut(s) 65, 188, 643, 1041, 1061, 1247, 1358
HpaII CCGG 4 cut(s) 158, 318, 1081, 1156
HphI GGTGA 5 cut(s) 433, 451, 943, 1353, 1382
Hpy166II GTNNAC 1 cut(s) 1399
Hpy188I TCNGA 5 cut(s) 204, 311, 459, 979, 1066
Hpy188III TCNNGA 6 cut(s) 218, 575, 809, 905, 1049, 1114
Hpy8I GTNNAC 1 cut(s) 1399
Hpy99I CGWCG 2 cut(s) 531, 1255
HpyAV CCTTC 5 cut(s) 76, 406, 1020, 1213, 1218
HpyCH4III ACNGT 4 cut(s) 988, 1322, 1370, 1403
HpyCH4IV ACGT 3 cut(s) 162, 453, 1110
HpyCH4V TGCA 6 cut(s) 251, 353, 486, 490, 508, 667
HpyF3I CTNAG 2 cut(s) 60, 916
HpySE526I ACGT 3 cut(s) 162, 453, 1110
Hsp92I GRCGYC 1 cut(s) 697
Hsp92II CATG 8 cut(s) 110, 233, 490, 734, 1028, 1057, 1126, 1415
HspAI GCGC 3 cut(s) 394, 396, 398
KspI CCGCGG 2 cut(s) 117, 285
Kzo9I GATC 3 cut(s) 87, 571, 1284
LguI GCTCTTC 2 cut(s) 601, 621
LmnI GCTCC 1 cut(s) 834
Lsp1109I GCAGC 8 cut(s) 115, 244, 247, 280, 284, 337, 387, 724
LweI GCATC 5 cut(s) 100, 468, 473, 697, 724
MaeI CTAG 2 cut(s) 336, 1332
MaeII ACGT 3 cut(s) 162, 453, 1110
MaeIII GTNAC 3 cut(s) 163, 329, 1118
MalI GATC 3 cut(s) 89, 573, 1286
MbiI CCGCTC 1 cut(s) 880
MboI GATC 3 cut(s) 87, 571, 1284
MhlI GDGCHC 6 cut(s) 155, 526, 760, 831, 1259, 1320
MluCI AATT 4 cut(s) 536, 552, 821, 868
MluI ACGCGT 1 cut(s) 1068
MlyI GAGTC 4 cut(s) 59, 652, 1035, 1352
MmeI TCCRAC 1 cut(s) 1385
Mph1103I ATGCAT 1 cut(s) 488
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 3 cut(s) 36, 539, 614
MslI CAYNNNNRTG 1 cut(s) 1371
MspA1I CMGCKG 5 cut(s) 116, 146, 266, 275, 284
MspI CCGG 4 cut(s) 158, 318, 1081, 1156
MspR9I CCNGG 3 cut(s) 386, 1081, 1157
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 5 cut(s) 116, 284, 396, 398, 1070
NciI CCSGG 2 cut(s) 1081, 1157
NdeII GATC 3 cut(s) 87, 571, 1284
NlaIII CATG 8 cut(s) 110, 233, 490, 734, 1028, 1057, 1126, 1415
NlaIV GGNNCC 6 cut(s) 830, 1128, 1160, 1205, 1319, 1382
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 329
NsiI ATGCAT 1 cut(s) 488
NspI RCATGY 1 cut(s) 490
PaeI GCATGC 1 cut(s) 490
PaeR7I CTCGAG 1 cut(s) 875
PauI GCGCGC 2 cut(s) 394, 396
PciSI GCTCTTC 2 cut(s) 601, 621
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 3 cut(s) 188, 1061, 1247
PleI GAGTC 4 cut(s) 59, 651, 1035, 1352
PpsI GAGTC 4 cut(s) 59, 651, 1035, 1352
Psp124BI GAGCTC 3 cut(s) 155, 526, 1259
Psp1406I AACGTT 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 6 cut(s) 830, 1128, 1160, 1205, 1319, 1382
PspPI GGNCC 8 cut(s) 815, 853, 920, 1126, 1153, 1159, 1352, 1381
PspXI VCTCGAGB 1 cut(s) 875
PteI GCGCGC 2 cut(s) 394, 396
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 1371
SacI GAGCTC 3 cut(s) 155, 526, 1259
SacII CCGCGG 2 cut(s) 117, 285
SapI GCTCTTC 2 cut(s) 601, 621
SaqAI TTAA 3 cut(s) 36, 539, 614
Sau3AI GATC 3 cut(s) 87, 571, 1284
Sau96I GGNCC 8 cut(s) 815, 853, 920, 1126, 1153, 1159, 1352, 1381
SchI GAGTC 4 cut(s) 59, 652, 1035, 1352
ScrFI CCNGG 3 cut(s) 386, 1081, 1157
SduI GDGCHC 6 cut(s) 155, 526, 760, 831, 1259, 1320
SfaNI GCATC 5 cut(s) 100, 468, 473, 697, 724
Sfr274I CTCGAG 1 cut(s) 875
Sfr303I CCGCGG 2 cut(s) 117, 285
SgrBI CCGCGG 2 cut(s) 117, 285
SinI GGWCC 2 cut(s) 815, 1153
SlaI CTCGAG 1 cut(s) 875
SmiMI CAYNNNNRTG 1 cut(s) 1371
SmlI CTYRAG 1 cut(s) 875
SmoI CTYRAG 1 cut(s) 875
SphI GCATGC 1 cut(s) 490
Sse9I AATT 4 cut(s) 536, 552, 821, 868
SspMI CTAG 2 cut(s) 336, 1332
SstI GAGCTC 3 cut(s) 155, 526, 1259
StyD4I CCNGG 3 cut(s) 384, 1079, 1155
StyI CCWWGG 3 cut(s) 1143, 1149, 1162
TaaI ACNGT 4 cut(s) 988, 1322, 1370, 1403
TaiI ACGT 3 cut(s) 165, 456, 1113
TaqI TCGA 5 cut(s) 526, 534, 876, 1103, 1253
TasI AATT 4 cut(s) 536, 552, 821, 868
TauI GCSGC 8 cut(s) 21, 116, 266, 284, 287, 299, 1007, 1390
TfiI GAWTC 3 cut(s) 188, 1061, 1247
Tru1I TTAA 3 cut(s) 36, 539, 614
Tru9I TTAA 3 cut(s) 36, 539, 614
TscAI CASTG 1 cut(s) 967
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 8 cut(s) 103, 257, 260, 272, 293, 350, 400, 737
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 349, 603, 609
TspGWI ACGGA 2 cut(s) 22, 954
TspRI CASTG 1 cut(s) 967
VpaK11BI GGWCC 2 cut(s) 815, 1153
XapI RAATTY 2 cut(s) 552, 821
XceI RCATGY 1 cut(s) 490
XcmI CCANNNNNNNNNTGG 1 cut(s) 1197
XhoI CTCGAG 1 cut(s) 875
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 2 cut(s) 336, 1332
Zsp2I ATGCAT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.