Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007423

Physical Location & Seq

Genomic Coordinates Reverse (-)

66170213 .. 66173744

Gene Structure 3532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60379

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGGAAAGAAAGGAAGCAGCTGGTTCTCGACAGTTAAGAAAGTTTTCAAACATTCTTCTAAGGACTCGCCGGACAAAAAGGAGATTGCGGAGAAATGGCAGCAACATGATGCTCCGGAGGTGGTGTCGTTTGAACATTTTCCGGCAGAGAGTTCTCCGGACAGAACCAATGATGAGAGCATTGCATCTACTCCTGCAAACCATGAAGACAGAGACCATGCCATTGCTGTGGCAATGGCGACAGCTGCTGCCGCAGATGCAGCAGTAGCAGCAGCTCAAGCGGCGGCTAAAGTTGTTAGATTGGCTGGTTATGGACGTCAGTTCTACTCTGTGGAAGAAAGGGCTGCAACCCTCATACAGTCATTTTACAGAGGCTACCTAGCTCGACGAGCTCTACGGGCGTTGAAGGGATTGGTGAGGTTACAAGCATTGGTGAGAGGCCATAACGTTCGGAAGCAAGCACAGATGACAATGCGATGCATGCAGGCACTAGTTCGTGTACAAGCAAGAGTTCGAGCTCGACGACTCCAATTGACCAATGACAAGCAGCAGATTCGTAAACATGTGGACAATGATACTGATGATGAAGAAGAAAGATTAAGAGCATTGGTAGAGCTGGAAGAAGAGCATAAGCTGAGAAGTCCTGTGAAGAAGCATGAAATGCAAACTAGGCACCACAGAAATGAAAGCTATTCCAAGGAAAATGCCTCGAAGAGACATGATGATGTGGTCCAAAGGGAGAGAGCTCTTGCTTACGCTTATAGCTACCAGCAACAACAACAGCTTCTACAATCCTTTCCTCATGGTAGTGATTTTGGGCACCAAACCAATCAAAGTGATAAGGGCCAATGGGGATGGAATTGGCTCGAGGGTTGGATGTCATCGCAACCCCACAATGCCCGCCACTCGGGAGCACGAGAGACCACTTATATGACACCGGCCACTACCAAAACCACCGACGACAACCTTTCCGAGAGGACAGTAGAAATGGACTCCATTGCATATCCAAGCTTGCGTAGTCAACTCAATCAAGAGATGACCAACTCTAACCAGTACTCAGCTCGACAAAGCCAACCAAGCCCGGACAATGTACCTAGCTACATGGCACCAACCAAGTCTGCCAAGGCCAAGGTACGAGGTCAGGGCTGGGTCAAGCAGCGAAGCCCTCCCACTCCCCAATGGAACCCCTCTACAAAGAAAGGCTCCGTAGTCGGTTCGGGTTGCGATTCGTCAAGTTCGGGTGGAGGACCCGCAAGCTACTTGATCCCAAAGAGCCCAAGCCCAAAGAGTAACGGGATACGCGGGCAGGCTAAATCGTCATTGGGCTTTAGCCCTGATTCTCCCCATGGCGAAGATTGGGCCCTGCCTCTTGCTGTTCATGGTTGGAGACATGATTTCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

467

Amino Acids

52.28

Weight (kDa)

9.6

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IQ	PF00612	113 - 133	8.9e-07	IQ calmodulin-binding motif
DUF4005	PF13178	329 - 411	1.2e-07	Protein of unknown function (DUF4005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49260 AT3G49260 AT3G49260 AT3G49260
fragaria_vesca	FvH4_7g31490 FvH4_7g31490 FvH4_7g31490 FvH4_7g31490
malus_domestica	MD01G1218100.v1.1 MD07G1288000.v1.1
prunus_persica	Prupe.2G309500_v2.0.a1 Prupe.2G309500_v2.0.a1
pyrus_communis	pycom07g26080
rosa_chinensis	RchiOBHm_Chr1g0380521
rosa_laevigata	RLG00000026288
rosa_multiflora	Rmu_ssc0000015.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279240
rosa_rugosa	Rorug01G0421900 Rorug01G0422000.1 Rorug01G0422100
rosa_samantha	Rh1AG446700 Rh1BG401900 Rh1CG416200 Rh1DG432100
rosa_wichuraiana	Rw1G038860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	319
AccB1I	GGYRCC	3 cut(s)	672, 819, 1105
AccII	CGCG	1 cut(s)	1302
AccIII	TCCGGA	2 cut(s)	115, 157
AciI	CCGC	7 cut(s)	89, 252, 281, 284, 901, 1251, 1302
AclI	AACGTT	1 cut(s)	447
AclWI	GGATC	1 cut(s)	1258
AcoI	YGGCCR	1 cut(s)	939
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	4 cut(s)	501, 1055, 1092, 1134
AfiI	CCNNNNNNNGG	1 cut(s)	907
AflIII	ACRYGT	1 cut(s)	562
AgsI	TTSAA	3 cut(s)	49, 134, 406
AhlI	ACTAGT	1 cut(s)	490
Alw21I	GWGCWC	4 cut(s)	394, 520, 748, 916
Alw26I	GTCTC	4 cut(s)	207, 709, 914, 1381
AlwI	GGATC	1 cut(s)	1258
AlwNI	CAGNNNCTG	1 cut(s)	248
Ama87I	CYCGRG	2 cut(s)	866, 907
Aor13HI	TCCGGA	2 cut(s)	115, 157
AoxI	GGCC	5 cut(s)	439, 844, 939, 1125, 1359
ApaI	GGGCCC	1 cut(s)	1363
Asp700I	GAANNNNTTC	2 cut(s)	44, 138
AspS9I	GGNCC	5 cut(s)	730, 844, 1247, 1359, 1360
AsuC2I	CCSGG	1 cut(s)	1082
AsuHPI	GGTGA	2 cut(s)	427, 445
AvaI	CYCGRG	2 cut(s)	866, 907
AvaII	GGWCC	2 cut(s)	730, 1247
BaeGI	GKGCMC	2 cut(s)	822, 1363
BanI	GGYRCC	3 cut(s)	672, 819, 1105
BanII	GRGCYC	5 cut(s)	394, 520, 748, 1277, 1363
BauI	CACGAG	1 cut(s)	915
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	4 cut(s)	394, 520, 748, 916
BccI	CCATC	1 cut(s)	849
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciVI	GTATCC	1 cut(s)	1290
BcnI	CCSGG	1 cut(s)	1082
BcoDI	GTCTC	4 cut(s)	207, 709, 914, 1381
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	4 cut(s)	380, 491, 669, 1095
BfuI	GTATCC	1 cut(s)	1290
BmcAI	AGTACT	1 cut(s)	1055
Bme1390I	CCNGG	1 cut(s)	1082
Bme18I	GGWCC	2 cut(s)	730, 1247
BmeT110I	CYCGRG	2 cut(s)	866, 907
BmgT120I	GGNCC	5 cut(s)	730, 844, 1247, 1359, 1360
BmiI	GGNNCC	7 cut(s)	674, 821, 1107, 1184, 1204, 1249, 1361
BmrFI	CCNGG	1 cut(s)	1082
BmsI	GCATC	4 cut(s)	100, 194, 247, 467
BpiI	GAAGAC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	1082
BsaHI	GRCGYC	1 cut(s)	316
BsaI	GGTCTC	2 cut(s)	207, 914
BsaJI	CCNNGG	4 cut(s)	696, 1122, 1128, 1345
BsaWI	WCCGGW	2 cut(s)	115, 157
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	907
Bse118I	RCCGGY	1 cut(s)	937
Bse1I	ACTGG	1 cut(s)	1051
Bse3DI	GCAATG	4 cut(s)	180, 222, 240, 996
BseAI	TCCGGA	2 cut(s)	115, 157
BseDI	CCNNGG	4 cut(s)	696, 1122, 1128, 1345
BseGI	GGATG	2 cut(s)	860, 882
BseLI	CCNNNNNNNGG	1 cut(s)	907
BseMI	GCAATG	4 cut(s)	180, 222, 240, 996
BseMII	CTCAG	2 cut(s)	626, 1071
BseNI	ACTGG	1 cut(s)	1051
BseSI	GKGCMC	2 cut(s)	822, 1363
BseYI	CCCAGC	1 cut(s)	1146
Bsh1236I	CGCG	1 cut(s)	1302
BshFI	GGCC	5 cut(s)	441, 846, 941, 1127, 1361
BshNI	GGYRCC	3 cut(s)	672, 819, 1105
BsiHKAI	GWGCWC	4 cut(s)	394, 520, 748, 916
BsiHKCI	CYCGRG	2 cut(s)	866, 907
BsiSI	CCGG	6 cut(s)	71, 116, 143, 158, 938, 1082
BslI	CCNNNNNNNGG	1 cut(s)	907
BsmAI	GTCTC	4 cut(s)	207, 709, 914, 1381
BsnI	GGCC	5 cut(s)	441, 846, 941, 1127, 1361
Bso31I	GGTCTC	2 cut(s)	207, 914
BsoBI	CYCGRG	2 cut(s)	866, 907
Bsp120I	GGGCCC	1 cut(s)	1359
Bsp1286I	GDGCHC	7 cut(s)	394, 520, 748, 822, 916, 1277, 1363
Bsp13I	TCCGGA	2 cut(s)	115, 157
Bsp1407I	TGTACA	1 cut(s)	499
Bsp143I	GATC	1 cut(s)	1263
Bsp19I	CCATGG	1 cut(s)	1345
BspACI	CCGC	7 cut(s)	89, 252, 281, 284, 901, 1251, 1302
BspANI	GGCC	5 cut(s)	441, 846, 941, 1127, 1361
BspCNI	CTCAG	2 cut(s)	627, 1070
BspEI	TCCGGA	2 cut(s)	115, 157
BspFNI	CGCG	1 cut(s)	1302
BspLI	GGNNCC	7 cut(s)	674, 821, 1107, 1184, 1204, 1249, 1361
BspPI	GGATC	1 cut(s)	1258
BspQI	GCTCTTC	1 cut(s)	618
BspT107I	GGYRCC	3 cut(s)	672, 819, 1105
BspTNI	GGTCTC	2 cut(s)	207, 914
BsrDI	GCAATG	4 cut(s)	180, 222, 240, 996
BsrFI	RCCGGY	1 cut(s)	937
BsrGI	TGTACA	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	1051
BssAI	RCCGGY	1 cut(s)	937
BssECI	CCNNGG	4 cut(s)	696, 1122, 1128, 1345
BssMI	GATC	1 cut(s)	1263
BssNI	GRCGYC	1 cut(s)	316
BssSI	CACGAG	1 cut(s)	915
BssT1I	CCWWGG	4 cut(s)	696, 1122, 1128, 1345
Bst2BI	CACGAG	1 cut(s)	915
Bst4CI	ACNGT	3 cut(s)	34, 360, 982
Bst6I	CTCTTC	2 cut(s)	618, 707
BstACI	GRCGYC	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstAUI	TGTACA	1 cut(s)	499
BstC8I	GCNNGC	8 cut(s)	459, 482, 486, 901, 1013, 1255, 1304, 1308
BstDEI	CTNAG	3 cut(s)	60, 635, 1057
BstDSI	CCRYGG	1 cut(s)	1345
BstF5I	GGATG	2 cut(s)	860, 882
BstFNI	CGCG	1 cut(s)	1302
BstKTI	GATC	1 cut(s)	1266
BstMAI	GTCTC	4 cut(s)	207, 709, 914, 1381
BstMBI	GATC	1 cut(s)	1263
BstNSI	RCATGY	2 cut(s)	484, 566
BstSCI	CCNGG	1 cut(s)	1080
BstSLI	GKGCMC	2 cut(s)	822, 1363
BstUI	CGCG	1 cut(s)	1302
BstV2I	GAAGAC	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	1290
BsuRI	GGCC	5 cut(s)	441, 846, 941, 1127, 1361
BtgI	CCRYGG	1 cut(s)	1345
BtgZI	GCGATG	2 cut(s)	490, 867
BtsCI	GGATG	2 cut(s)	860, 882
Cac8I	GCNNGC	8 cut(s)	459, 482, 486, 901, 1013, 1255, 1304, 1308
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	937
Cfr13I	GGNCC	5 cut(s)	730, 844, 1247, 1359, 1360
Csp6I	GTAC	4 cut(s)	500, 1054, 1091, 1133
CviQI	GTAC	4 cut(s)	500, 1054, 1091, 1133
DdeI	CTNAG	3 cut(s)	60, 635, 1057
DpnI	GATC	1 cut(s)	1265
DpnII	GATC	1 cut(s)	1263
EaeI	YGGCCR	1 cut(s)	939
Eam1104I	CTCTTC	2 cut(s)	618, 707
EarI	CTCTTC	2 cut(s)	618, 707
Ecl136II	GAGCTC	3 cut(s)	392, 518, 746
Eco130I	CCWWGG	4 cut(s)	696, 1122, 1128, 1345
Eco24I	GRGCYC	5 cut(s)	394, 520, 748, 1277, 1363
Eco31I	GGTCTC	2 cut(s)	207, 914
Eco47I	GGWCC	2 cut(s)	730, 1247
Eco53kI	GAGCTC	3 cut(s)	392, 518, 746
Eco88I	CYCGRG	2 cut(s)	866, 907
EcoICRI	GAGCTC	3 cut(s)	392, 518, 746
EcoO109I	RGGNCCY	2 cut(s)	1247, 1360
EcoT14I	CCWWGG	4 cut(s)	696, 1122, 1128, 1345
EcoT22I	ATGCAT	1 cut(s)	482
EcoT38I	GRGCYC	5 cut(s)	394, 520, 748, 1277, 1363
ErhI	CCWWGG	4 cut(s)	696, 1122, 1128, 1345
FauI	CCCGC	3 cut(s)	908, 1258, 1295
FokI	GGATG	2 cut(s)	867, 889
FriOI	GRGCYC	5 cut(s)	394, 520, 748, 1277, 1363
FspBI	CTAG	4 cut(s)	380, 491, 669, 1095
GsaI	CCCAGC	1 cut(s)	1150
HaeIII	GGCC	5 cut(s)	441, 846, 941, 1127, 1361
HapII	CCGG	6 cut(s)	71, 116, 143, 158, 938, 1082
Hin1I	GRCGYC	1 cut(s)	316
HincII	GTYRAC	1 cut(s)	1022
HindII	GTYRAC	1 cut(s)	1022
HindIII	AAGCTT	1 cut(s)	1009
HinfI	GANTC	6 cut(s)	65, 525, 553, 992, 1226, 1337
HpaII	CCGG	6 cut(s)	71, 116, 143, 158, 938, 1082
HphI	GGTGA	2 cut(s)	427, 445
Hpy166II	GTNNAC	4 cut(s)	500, 560, 568, 1022
Hpy188I	TCNGA	2 cut(s)	453, 973
Hpy188III	TCNNGA	5 cut(s)	28, 116, 158, 909, 1031
Hpy8I	GTNNAC	4 cut(s)	500, 560, 568, 1022
Hpy99I	CGWCG	3 cut(s)	390, 525, 962
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	3 cut(s)	34, 360, 982
HpyCH4IV	ACGT	2 cut(s)	316, 447
HpyCH4V	TGCA	8 cut(s)	185, 197, 260, 347, 480, 484, 664, 1001
HpyF3I	CTNAG	3 cut(s)	60, 635, 1057
HpySE526I	ACGT	2 cut(s)	316, 447
Hsp92I	GRCGYC	1 cut(s)	316
Kpn2I	TCCGGA	2 cut(s)	115, 157
Kzo9I	GATC	1 cut(s)	1263
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	3 cut(s)	118, 911, 1208
LweI	GCATC	4 cut(s)	100, 194, 247, 467
MaeI	CTAG	4 cut(s)	380, 491, 669, 1095
MaeII	ACGT	2 cut(s)	316, 447
MaeIII	GTNAC	2 cut(s)	420, 1289
MalI	GATC	1 cut(s)	1265
MboI	GATC	1 cut(s)	1263
MfeI	CAATTG	1 cut(s)	530
MhlI	GDGCHC	7 cut(s)	394, 520, 748, 822, 916, 1277, 1363
MluCI	AATT	2 cut(s)	530, 859
MlyI	GAGTC	3 cut(s)	59, 519, 986
MmeI	TCCRAC	2 cut(s)	854, 1364
Mph1103I	ATGCAT	1 cut(s)	482
MroI	TCCGGA	2 cut(s)	115, 157
MroXI	GAANNNNTTC	2 cut(s)	44, 138
MseI	TTAA	2 cut(s)	36, 599
MslI	CAYNNNNRTG	5 cut(s)	227, 681, 723, 807, 929
MspA1I	CMGCKG	2 cut(s)	21, 245
MspI	CCGG	6 cut(s)	71, 116, 143, 158, 938, 1082
MspR9I	CCNGG	1 cut(s)	1082
MunI	CAATTG	1 cut(s)	530
MvnI	CGCG	1 cut(s)	1302
NciI	CCSGG	1 cut(s)	1082
NcoI	CCATGG	1 cut(s)	1345
NdeII	GATC	1 cut(s)	1263
NlaIV	GGNNCC	7 cut(s)	674, 821, 1107, 1184, 1204, 1249, 1361
NsiI	ATGCAT	1 cut(s)	482
NspI	RCATGY	2 cut(s)	484, 566
PaeI	GCATGC	1 cut(s)	484
PaeR7I	CTCGAG	1 cut(s)	866
PciI	ACATGT	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	520
PdmI	GAANNNNTTC	2 cut(s)	44, 138
PfeI	GAWTC	3 cut(s)	553, 1226, 1337
PleI	GAGTC	3 cut(s)	59, 519, 986
PpsI	GAGTC	3 cut(s)	59, 519, 986
PpuMI	RGGWCCY	1 cut(s)	1247
PscI	ACATGT	1 cut(s)	562
Psp124BI	GAGCTC	3 cut(s)	394, 520, 748
Psp1406I	AACGTT	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	1247
PspFI	CCCAGC	1 cut(s)	1146
PspN4I	GGNNCC	7 cut(s)	674, 821, 1107, 1184, 1204, 1249, 1361
PspOMI	GGGCCC	1 cut(s)	1359
PspPI	GGNCC	5 cut(s)	730, 844, 1247, 1359, 1360
PspPPI	RGGWCCY	1 cut(s)	1247
PspXI	VCTCGAGB	1 cut(s)	866
PstNI	CAGNNNCTG	1 cut(s)	248
PvuII	CAGCTG	2 cut(s)	21, 245
RsaI	GTAC	4 cut(s)	501, 1055, 1092, 1134
RsaNI	GTAC	4 cut(s)	500, 1054, 1091, 1133
RseI	CAYNNNNRTG	5 cut(s)	227, 681, 723, 807, 929
SacI	GAGCTC	3 cut(s)	394, 520, 748
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	36, 599
Sau3AI	GATC	1 cut(s)	1263
Sau96I	GGNCC	5 cut(s)	730, 844, 1247, 1359, 1360
ScaI	AGTACT	1 cut(s)	1055
SchI	GAGTC	3 cut(s)	59, 519, 986
ScrFI	CCNGG	1 cut(s)	1082
SduI	GDGCHC	7 cut(s)	394, 520, 748, 822, 916, 1277, 1363
SfaNI	GCATC	4 cut(s)	100, 194, 247, 467
Sfr274I	CTCGAG	1 cut(s)	866
SinI	GGWCC	2 cut(s)	730, 1247
SlaI	CTCGAG	1 cut(s)	866
SmiMI	CAYNNNNRTG	5 cut(s)	227, 681, 723, 807, 929
SmlI	CTYRAG	2 cut(s)	276, 866
SmoI	CTYRAG	2 cut(s)	276, 866
SpeI	ACTAGT	1 cut(s)	490
SphI	GCATGC	1 cut(s)	484
Sse9I	AATT	2 cut(s)	530, 859
SsiI	CCGC	7 cut(s)	89, 252, 281, 284, 901, 1251, 1302
SspMI	CTAG	4 cut(s)	380, 491, 669, 1095
SstI	GAGCTC	3 cut(s)	394, 520, 748
StyD4I	CCNGG	1 cut(s)	1080
StyI	CCWWGG	4 cut(s)	696, 1122, 1128, 1345
TaaI	ACNGT	3 cut(s)	34, 360, 982
TaiI	ACGT	2 cut(s)	319, 450
TaqI	TCGA	7 cut(s)	29, 385, 514, 520, 710, 867, 1063
TasI	AATT	2 cut(s)	530, 859
TatI	WGTACW	2 cut(s)	499, 1053
TauI	GCSGC	3 cut(s)	254, 284, 287
TfiI	GAWTC	3 cut(s)	553, 1226, 1337
Tru1I	TTAA	2 cut(s)	36, 599
Tru9I	TTAA	2 cut(s)	36, 599
TspDTI	ATGAA	5 cut(s)	219, 600, 672, 699, 1367
TspGWI	ACGGA	1 cut(s)	1195
VpaK11BI	GGWCC	2 cut(s)	730, 1247
XceI	RCATGY	2 cut(s)	484, 566
XhoI	CTCGAG	1 cut(s)	866
XmnI	GAANNNNTTC	2 cut(s)	44, 138
XspI	CTAG	4 cut(s)	380, 491, 669, 1095
ZraI	GACGTC	1 cut(s)	317
ZrmI	AGTACT	1 cut(s)	1055
Zsp2I	ATGCAT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.