Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007423

Physical Location & Seq

Genomic Coordinates Forward (+)

2089000 .. 2092576

Gene Structure 3577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGGAAAGAAAGGAAGCAGCTGGTTCTCGACAGTTAAGAAAGTTTTCAAACATTCTTCCAAGGACTCGCCGGACAAAAAGAAGGAGATTGCGGAGAAATGGCAGCAACATGATGCTCCGGAGGTGGTGTCGTTTGAACATTTTCCGGCAGAGAGTTCTCCGGACAGAACCAATGACGAGAGCATTGCATCTACTCCTGCAAACCATGAAGACAGAGACCATGCCATTGCCGTGGCAATGGCGACAGCTGCTGCCGCAGACGCAGCAGTAGCAGCAGCTCAAGCGGCGGCTAAAGTTGTTAGATTGGCTGGTTATGGACGTCAGTTCTACTCTGTGGAAGAAAGGGCTGCAACCCTCATACAGTCATTTTACAGAGGCTACCTAGCTCGACGAGCTCTACGGGCGTTGAAGGGATTAGTGAGGTTACAAGCATTGGTGAGAGGCCATAACGTTCGGAAGCAAGCACAGATGACAATGCGATGCATGCAGGCACTAGTTCGTGTACAAGCAAGAGTTCGAGCTCGACGACTCCAATTGACCAATGACAAGCAGCAGATTCGTAAACATGCGGACAATGATACTGATGATGAAGAAGAAAGATTAAGAGCATTGGTAGAGCTGGAAGAAGAGCATAAGCTGAGAAGTCCTGTGAAGAAGCATGAAATGCAAACTAGGCACCATAGAAATGAAAGCTATTCCAAGGAAAAGGCCTCGAAGAGACATGATGATGTGGTCCAAAGGGAGAGAGCTCTTGCTTACGCTTATAGCTACCAGCAACAACAACAGCTTCTACAATCCATTCCTCATGGTAGTGATTTTGGGCACCAAGCCAATCAAAGTGATAAGGGCCAATGGGGATGGAATTGGCTCGAGGGTTGGATGTCATCGCAACCCCACAATGCCCGCCACTCGGGAGCACGAGAGACCACTTATATGACACCAGCCACTACCAAAACCACCGACGACAGCATTTCCGAGAAGACAGTAGAAATGGACTCCATTGCATATCCAAGCTTGCGTAGTCAACTCAATCAAGAGATGACCAACTCTTCTAACCAGTATTCAGCTCGACAAAGCCAACCAAGCCCGGACAATGTACCTAGCTACATGGCACCAACCAAGTCTGCCAAGGCCAAGGTACGAGGTCAGGGCTGGGTCAAGCAGCGAAGCCCTCCCACTCCCCAGTGGAATCCTTCTACAAAGAAAGGCTCGGTTGTCGGGTCGGGTTGCGATTCGTCAAGTTCGGGTGGAGGAACCGCAAGCTACTTGATCCCAAAGAGCCCAAGCCCAAAGAGTAGCGGGATACGCGGGCAGGCTAAATTGTCATTGGGCTTTAGCCCTGATTCTCCGCATGGCGAAGATTGGGCCCTGCCTCTAGCTGTTCATGGTTGGAGACATGATTTCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

469

Amino Acids

52.36

Weight (kDa)

9.65

Isoelectric Point (pI)

58.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IQ	PF00612	114 - 134	9e-07	IQ calmodulin-binding motif
DUF4005	PF13178	330 - 415	3e-07	Protein of unknown function (DUF4005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49260 AT3G49260 AT3G49260 AT3G49260
fragaria_vesca	FvH4_7g31490 FvH4_7g31490 FvH4_7g31490 FvH4_7g31490
malus_domestica	MD01G1218100.v1.1 MD07G1288000.v1.1
prunus_persica	Prupe.2G309500_v2.0.a1 Prupe.2G309500_v2.0.a1
pyrus_communis	pycom07g26080
rosa_chinensis	RchiOBHm_Chr1g0380521
rosa_laevigata	RLG00000026288
rosa_multiflora	Rmu_ssc0000015.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279240
rosa_rugosa	Rorug01G0421900 Rorug01G0422000.1 Rorug01G0422100
rosa_samantha	Rh1AG446700 Rh1BG401900 Rh1CG416200 Rh1DG432100
rosa_wichuraiana	Rw1G038860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	322
AccB1I	GGYRCC	3 cut(s)	675, 822, 1111
AccII	CGCG	1 cut(s)	1308
AccIII	TCCGGA	2 cut(s)	118, 160
AclI	AACGTT	1 cut(s)	450
AclWI	GGATC	1 cut(s)	1264
AcyI	GRCGYC	1 cut(s)	319
AfaI	GTAC	3 cut(s)	504, 1098, 1140
AfiI	CCNNNNNNNGG	1 cut(s)	910
AgsI	TTSAA	3 cut(s)	49, 137, 409
AhlI	ACTAGT	1 cut(s)	493
Alw21I	GWGCWC	4 cut(s)	397, 523, 751, 919
Alw26I	GTCTC	4 cut(s)	210, 712, 917, 1387
AlwI	GGATC	1 cut(s)	1264
AlwNI	CAGNNNCTG	1 cut(s)	251
Ama87I	CYCGRG	2 cut(s)	869, 910
Aor13HI	TCCGGA	2 cut(s)	118, 160
AoxI	GGCC	5 cut(s)	442, 708, 847, 1131, 1365
ApaI	GGGCCC	1 cut(s)	1369
Asp700I	GAANNNNTTC	2 cut(s)	44, 141
AspS9I	GGNCC	4 cut(s)	733, 847, 1365, 1366
AsuC2I	CCSGG	1 cut(s)	1088
AsuHPI	GGTGA	1 cut(s)	448
AvaI	CYCGRG	2 cut(s)	869, 910
AvaII	GGWCC	1 cut(s)	733
BaeGI	GKGCMC	2 cut(s)	825, 1369
BanI	GGYRCC	3 cut(s)	675, 822, 1111
BanII	GRGCYC	5 cut(s)	397, 523, 751, 1283, 1369
BauI	CACGAG	1 cut(s)	918
BbsI	GAAGAC	2 cut(s)	216, 986
Bbv12I	GWGCWC	4 cut(s)	397, 523, 751, 919
BccI	CCATC	1 cut(s)	852
BceAI	ACGGC	1 cut(s)	215
BcgI	CGANNNNNNTGC	4 cut(s)	167, 201, 539, 573
BciVI	GTATCC	1 cut(s)	1296
BcnI	CCSGG	1 cut(s)	1088
BcoDI	GTCTC	4 cut(s)	210, 712, 917, 1387
BcuI	ACTAGT	1 cut(s)	493
BfaI	CTAG	5 cut(s)	383, 494, 672, 1101, 1376
BfuI	GTATCC	1 cut(s)	1296
Bme1390I	CCNGG	1 cut(s)	1088
Bme18I	GGWCC	1 cut(s)	733
BmeT110I	CYCGRG	2 cut(s)	869, 910
BmgT120I	GGNCC	4 cut(s)	733, 847, 1365, 1366
BmiI	GGNNCC	5 cut(s)	677, 824, 1113, 1255, 1367
BmrFI	CCNGG	1 cut(s)	1088
BmrI	ACTGGG	1 cut(s)	1177
BmsI	GCATC	3 cut(s)	103, 197, 470
BmuI	ACTGGG	1 cut(s)	1177
BpiI	GAAGAC	2 cut(s)	216, 986
BpuEI	CTTGAG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	1088
BsaHI	GRCGYC	1 cut(s)	319
BsaI	GGTCTC	2 cut(s)	210, 917
BsaJI	CCNNGG	5 cut(s)	60, 231, 699, 1128, 1134
BsaWI	WCCGGW	2 cut(s)	118, 160
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	910
Bse1I	ACTGG	2 cut(s)	1057, 1183
Bse3DI	GCAATG	4 cut(s)	183, 225, 243, 999
BseAI	TCCGGA	2 cut(s)	118, 160
BseDI	CCNNGG	5 cut(s)	60, 231, 699, 1128, 1134
BseGI	GGATG	2 cut(s)	863, 885
BseLI	CCNNNNNNNGG	1 cut(s)	910
BseMI	GCAATG	4 cut(s)	183, 225, 243, 999
BseMII	CTCAG	1 cut(s)	629
BseNI	ACTGG	2 cut(s)	1057, 1183
BseSI	GKGCMC	2 cut(s)	825, 1369
BseYI	CCCAGC	1 cut(s)	1152
Bsh1236I	CGCG	1 cut(s)	1308
BshFI	GGCC	5 cut(s)	444, 710, 849, 1133, 1367
BshNI	GGYRCC	3 cut(s)	675, 822, 1111
BsiHKAI	GWGCWC	4 cut(s)	397, 523, 751, 919
BsiHKCI	CYCGRG	2 cut(s)	869, 910
BsiSI	CCGG	5 cut(s)	71, 119, 146, 161, 1088
BslI	CCNNNNNNNGG	1 cut(s)	910
BsmAI	GTCTC	4 cut(s)	210, 712, 917, 1387
BsnI	GGCC	5 cut(s)	444, 710, 849, 1133, 1367
Bso31I	GGTCTC	2 cut(s)	210, 917
BsoBI	CYCGRG	2 cut(s)	869, 910
Bsp120I	GGGCCC	1 cut(s)	1365
Bsp1286I	GDGCHC	7 cut(s)	397, 523, 751, 825, 919, 1283, 1369
Bsp13I	TCCGGA	2 cut(s)	118, 160
Bsp1407I	TGTACA	1 cut(s)	502
Bsp143I	GATC	1 cut(s)	1269
BspANI	GGCC	5 cut(s)	444, 710, 849, 1133, 1367
BspCNI	CTCAG	1 cut(s)	630
BspEI	TCCGGA	2 cut(s)	118, 160
BspFNI	CGCG	1 cut(s)	1308
BspLI	GGNNCC	5 cut(s)	677, 824, 1113, 1255, 1367
BspPI	GGATC	1 cut(s)	1264
BspQI	GCTCTTC	1 cut(s)	621
BspT107I	GGYRCC	3 cut(s)	675, 822, 1111
BspTNI	GGTCTC	2 cut(s)	210, 917
BsrDI	GCAATG	4 cut(s)	183, 225, 243, 999
BsrGI	TGTACA	1 cut(s)	502
BsrI	ACTGG	2 cut(s)	1057, 1183
BssECI	CCNNGG	5 cut(s)	60, 231, 699, 1128, 1134
BssMI	GATC	1 cut(s)	1269
BssNI	GRCGYC	1 cut(s)	319
BssSI	CACGAG	1 cut(s)	918
BssT1I	CCWWGG	4 cut(s)	60, 699, 1128, 1134
Bst2BI	CACGAG	1 cut(s)	918
Bst4CI	ACNGT	3 cut(s)	34, 363, 985
Bst6I	CTCTTC	3 cut(s)	621, 710, 1054
BstACI	GRCGYC	1 cut(s)	319
BstAPI	GCANNNNNTGC	1 cut(s)	664
BstAUI	TGTACA	1 cut(s)	502
BstC8I	GCNNGC	8 cut(s)	462, 485, 489, 904, 1016, 1261, 1310, 1314
BstDEI	CTNAG	1 cut(s)	638
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	863, 885
BstFNI	CGCG	1 cut(s)	1308
BstKTI	GATC	1 cut(s)	1272
BstMAI	GTCTC	4 cut(s)	210, 712, 917, 1387
BstMBI	GATC	1 cut(s)	1269
BstNSI	RCATGY	2 cut(s)	487, 569
BstSCI	CCNGG	1 cut(s)	1086
BstSLI	GKGCMC	2 cut(s)	825, 1369
BstUI	CGCG	1 cut(s)	1308
BstV2I	GAAGAC	2 cut(s)	216, 986
BstXI	CCANNNNNNTGG	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	1296
BsuRI	GGCC	5 cut(s)	444, 710, 849, 1133, 1367
BtgI	CCRYGG	1 cut(s)	231
BtgZI	GCGATG	2 cut(s)	493, 870
BtsCI	GGATG	2 cut(s)	863, 885
BtsIMutI	CAGTG	1 cut(s)	1190
Cac8I	GCNNGC	8 cut(s)	462, 485, 489, 904, 1016, 1261, 1310, 1314
CaiI	CAGNNNCTG	1 cut(s)	251
Cfr13I	GGNCC	4 cut(s)	733, 847, 1365, 1366
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	3 cut(s)	503, 1097, 1139
CviQI	GTAC	3 cut(s)	503, 1097, 1139
DdeI	CTNAG	1 cut(s)	638
DpnI	GATC	1 cut(s)	1271
DpnII	GATC	1 cut(s)	1269
Eam1104I	CTCTTC	3 cut(s)	621, 710, 1054
EarI	CTCTTC	3 cut(s)	621, 710, 1054
Ecl136II	GAGCTC	3 cut(s)	395, 521, 749
Eco130I	CCWWGG	4 cut(s)	60, 699, 1128, 1134
Eco147I	AGGCCT	1 cut(s)	710
Eco24I	GRGCYC	5 cut(s)	397, 523, 751, 1283, 1369
Eco31I	GGTCTC	2 cut(s)	210, 917
Eco47I	GGWCC	1 cut(s)	733
Eco53kI	GAGCTC	3 cut(s)	395, 521, 749
Eco88I	CYCGRG	2 cut(s)	869, 910
EcoICRI	GAGCTC	3 cut(s)	395, 521, 749
EcoO109I	RGGNCCY	1 cut(s)	1366
EcoT14I	CCWWGG	4 cut(s)	60, 699, 1128, 1134
EcoT22I	ATGCAT	1 cut(s)	485
EcoT38I	GRGCYC	5 cut(s)	397, 523, 751, 1283, 1369
ErhI	CCWWGG	4 cut(s)	60, 699, 1128, 1134
FauI	CCCGC	3 cut(s)	911, 1292, 1301
FokI	GGATG	2 cut(s)	870, 892
FriOI	GRGCYC	5 cut(s)	397, 523, 751, 1283, 1369
FspBI	CTAG	5 cut(s)	383, 494, 672, 1101, 1376
GsaI	CCCAGC	1 cut(s)	1156
HaeIII	GGCC	5 cut(s)	444, 710, 849, 1133, 1367
HapII	CCGG	5 cut(s)	71, 119, 146, 161, 1088
HgaI	GACGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	1025
HindII	GTYRAC	1 cut(s)	1025
HindIII	AAGCTT	1 cut(s)	1012
HinfI	GANTC	7 cut(s)	65, 528, 556, 995, 1189, 1232, 1343
HpaII	CCGG	5 cut(s)	71, 119, 146, 161, 1088
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	3 cut(s)	503, 563, 1025
Hpy188I	TCNGA	2 cut(s)	456, 976
Hpy188III	TCNNGA	5 cut(s)	28, 119, 161, 912, 1034
Hpy8I	GTNNAC	3 cut(s)	503, 563, 1025
Hpy99I	CGWCG	3 cut(s)	393, 528, 965
HpyAV	CCTTC	3 cut(s)	76, 403, 1203
HpyCH4III	ACNGT	3 cut(s)	34, 363, 985
HpyCH4IV	ACGT	2 cut(s)	319, 450
HpyCH4V	TGCA	7 cut(s)	188, 200, 350, 483, 487, 667, 1004
HpyF3I	CTNAG	1 cut(s)	638
HpySE526I	ACGT	2 cut(s)	319, 450
Hsp92I	GRCGYC	1 cut(s)	319
Kpn2I	TCCGGA	2 cut(s)	118, 160
Kzo9I	GATC	1 cut(s)	1269
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	2 cut(s)	121, 914
LweI	GCATC	3 cut(s)	103, 197, 470
MaeI	CTAG	5 cut(s)	383, 494, 672, 1101, 1376
MaeII	ACGT	2 cut(s)	319, 450
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	1 cut(s)	1271
MboI	GATC	1 cut(s)	1269
MfeI	CAATTG	1 cut(s)	533
MhlI	GDGCHC	7 cut(s)	397, 523, 751, 825, 919, 1283, 1369
MluCI	AATT	3 cut(s)	533, 862, 1319
MlyI	GAGTC	3 cut(s)	59, 522, 989
MmeI	TCCRAC	2 cut(s)	857, 1370
Mph1103I	ATGCAT	1 cut(s)	485
MroI	TCCGGA	2 cut(s)	118, 160
MroXI	GAANNNNTTC	2 cut(s)	44, 141
MseI	TTAA	2 cut(s)	36, 602
MslI	CAYNNNNRTG	5 cut(s)	230, 684, 726, 810, 932
MspA1I	CMGCKG	2 cut(s)	21, 248
MspI	CCGG	5 cut(s)	71, 119, 146, 161, 1088
MspR9I	CCNGG	1 cut(s)	1088
MunI	CAATTG	1 cut(s)	533
MvnI	CGCG	1 cut(s)	1308
NciI	CCSGG	1 cut(s)	1088
NdeII	GATC	1 cut(s)	1269
NlaIV	GGNNCC	5 cut(s)	677, 824, 1113, 1255, 1367
NsiI	ATGCAT	1 cut(s)	485
NspI	RCATGY	2 cut(s)	487, 569
PaeI	GCATGC	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	869
PceI	AGGCCT	1 cut(s)	710
PciSI	GCTCTTC	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	523
PdmI	GAANNNNTTC	2 cut(s)	44, 141
PfeI	GAWTC	4 cut(s)	556, 1189, 1232, 1343
PleI	GAGTC	3 cut(s)	59, 522, 989
PpsI	GAGTC	3 cut(s)	59, 522, 989
Psp124BI	GAGCTC	3 cut(s)	397, 523, 751
Psp1406I	AACGTT	1 cut(s)	450
PspFI	CCCAGC	1 cut(s)	1152
PspN4I	GGNNCC	5 cut(s)	677, 824, 1113, 1255, 1367
PspOMI	GGGCCC	1 cut(s)	1365
PspPI	GGNCC	4 cut(s)	733, 847, 1365, 1366
PspXI	VCTCGAGB	1 cut(s)	869
PstNI	CAGNNNCTG	1 cut(s)	251
PvuII	CAGCTG	2 cut(s)	21, 248
RsaI	GTAC	3 cut(s)	504, 1098, 1140
RsaNI	GTAC	3 cut(s)	503, 1097, 1139
RseI	CAYNNNNRTG	5 cut(s)	230, 684, 726, 810, 932
SacI	GAGCTC	3 cut(s)	397, 523, 751
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	2 cut(s)	36, 602
Sau3AI	GATC	1 cut(s)	1269
Sau96I	GGNCC	4 cut(s)	733, 847, 1365, 1366
SchI	GAGTC	3 cut(s)	59, 522, 989
ScrFI	CCNGG	1 cut(s)	1088
SduI	GDGCHC	7 cut(s)	397, 523, 751, 825, 919, 1283, 1369
SfaNI	GCATC	3 cut(s)	103, 197, 470
Sfr274I	CTCGAG	1 cut(s)	869
SinI	GGWCC	1 cut(s)	733
SlaI	CTCGAG	1 cut(s)	869
SmiMI	CAYNNNNRTG	5 cut(s)	230, 684, 726, 810, 932
SmlI	CTYRAG	2 cut(s)	279, 869
SmoI	CTYRAG	2 cut(s)	279, 869
SpeI	ACTAGT	1 cut(s)	493
SphI	GCATGC	1 cut(s)	487
Sse9I	AATT	3 cut(s)	533, 862, 1319
SseBI	AGGCCT	1 cut(s)	710
SspMI	CTAG	5 cut(s)	383, 494, 672, 1101, 1376
SstI	GAGCTC	3 cut(s)	397, 523, 751
StuI	AGGCCT	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	1086
StyI	CCWWGG	4 cut(s)	60, 699, 1128, 1134
TaaI	ACNGT	3 cut(s)	34, 363, 985
TaiI	ACGT	2 cut(s)	322, 453
TaqI	TCGA	7 cut(s)	29, 388, 517, 523, 713, 870, 1069
TasI	AATT	3 cut(s)	533, 862, 1319
TatI	WGTACW	1 cut(s)	502
TauI	GCSGC	3 cut(s)	257, 287, 290
TfiI	GAWTC	4 cut(s)	556, 1189, 1232, 1343
Tru1I	TTAA	2 cut(s)	36, 602
Tru9I	TTAA	2 cut(s)	36, 602
TscAI	CASTG	1 cut(s)	1190
TspDTI	ATGAA	5 cut(s)	222, 603, 675, 702, 1373
TspRI	CASTG	1 cut(s)	1190
VpaK11BI	GGWCC	1 cut(s)	733
XceI	RCATGY	2 cut(s)	487, 569
XhoI	CTCGAG	1 cut(s)	869
XmnI	GAANNNNTTC	2 cut(s)	44, 141
XspI	CTAG	5 cut(s)	383, 494, 672, 1101, 1376
ZraI	GACGTC	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.