Rh1CG416200

IQ-DOMAIN 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
67737031 .. 67739945
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG416200.1

Sequence Viewer

Length: 1407 bp
ATGGGAAAGAAAGGAAGCAGCTGGTTCTCGACAGTTAAGAAAGTTTTCAAACATTCTTCTAAGGACTCGCCGGACAAAAAGAAGGAGATTGCGGAGAAATGGCAGCAACATGATGCTCCGGAGGTGGTGTCGTTTGAACATTTTCCGGCAGAGAGTTCTCCGGACAGAACCAATGACGAGAGCATTGCATCTACTCCTGCAAACCATGAAGACAGAGACCACGCCATTGCTGTGGCAATGGCGACAGCTGCTGCCGCAGACGCAGCAGTAGTAGCAGCTCAAGCGGCGGCTAAAGTTGTTAGATTGGCTGGTTATGGACGTCAGTTCTACTCTGTGGAAGAAAGGGCTGCAACCCTCATACAGTCATTTTACAGAGGCTACCTAGCTCGACGAGCTCTACGGGCGTTGAAGGGATTGGTGAGGTTACAAGCATTGGTGAGAGGCCATAACGTTCGGAAGCAAGCACAGATGACAATGCGATGCATGCAGGCACTAGTTCGTGTACAAGCAAGAGTTCGAGCTCGACGACTCCAATTGACCAATGACAAGCAGCAGATTCGTAAACATGTGGACAATGATACTGATGATGAAGAAGAAAGATTAAGAGCATTGGTAGAGCTGGAAGAAGAGCATAAGCTGAGAAGTCCTGTGAAGAAGCATGAAATGCAAACTAGGCACCACAGAAATGAAAGCTATTCCAAGGAAAATGCCTCGAAGAGACATGATGATGTGGTCCAAAGGGAGAGAGCTCTTGCTTACGCTTATAGCTACCAGCAACAACAACAGCTTCTACAATCCATTCCTCATGGTAGTGATTTTGGGCACCAAGCCAATCAAAGTGATAAGGGCCAATGGGGATGGAATTGGCTCGAGGGTTGGATGTCATCGCAACCCCACAATGCCCGCCACTCGGGAGCACGAGAGACCACTTATATGACACCGGCCACTACCAAAACCACCGACGACAACCTTTCCGAGAGGACAGTAGAAATGGACTCCATTGCATATCCAAGCTTGCGTAGTCAACTCAATCAAGAGATGACCAACTCTAACCAGTACTCAGCTCGACAAAGCCAACCAAGCCCGGACAATGTACCTAGCTACATGGCACCAACCAAGTCTGCCAAGGCCAAGGTACGAGGTCAGGGCTGGGTCAAGCAGCGAAGCCCTCCCACTCCCCAATGGAACCCCTCTACAAAGAAAGGCTCGGTAGTCGGTTCGGGTTGCGATTCGTCAAGTTCGGGTGGAGGACCCGCAAGCTACTTGATCCCAAAGAGCCCAAGCCCAAAGAGTAACGGGATGCGCGGGCAGGCTAAATCGTCATTGGGCTTTAGCCCTGATTCTCCCCATGGCGAAGATTGGGCCCTGCCTCTTGCTGTTCATGGTTGGAGACATGATTTCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

52.39

Weight (kDa)

9.63

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IQ PF00612 114 - 134 9e-07 IQ calmodulin-binding motif
DUF4005 PF13178 330 - 413 1.2e-07 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 322
AccB1I GGYRCC 3 cut(s) 675, 822, 1108
AccII CGCG 1 cut(s) 1305
AccIII TCCGGA 2 cut(s) 118, 160
AciI CCGC 7 cut(s) 92, 255, 284, 287, 904, 1254, 1305
AclI AACGTT 1 cut(s) 450
AclWI GGATC 1 cut(s) 1261
AcoI YGGCCR 1 cut(s) 942
AcyI GRCGYC 1 cut(s) 319
AfaI GTAC 4 cut(s) 504, 1058, 1095, 1137
AfiI CCNNNNNNNGG 1 cut(s) 910
AflIII ACRYGT 1 cut(s) 565
AgsI TTSAA 3 cut(s) 49, 137, 409
AhlI ACTAGT 1 cut(s) 493
Alw21I GWGCWC 4 cut(s) 397, 523, 751, 919
Alw26I GTCTC 4 cut(s) 210, 712, 917, 1384
AlwI GGATC 1 cut(s) 1261
AlwNI CAGNNNCTG 1 cut(s) 251
Ama87I CYCGRG 2 cut(s) 869, 910
Aor13HI TCCGGA 2 cut(s) 118, 160
AoxI GGCC 5 cut(s) 442, 847, 942, 1128, 1362
ApaI GGGCCC 1 cut(s) 1366
ApeKI GCWGC 9 cut(s) 18, 103, 248, 251, 263, 275, 347, 550, 1159
Asp700I GAANNNNTTC 2 cut(s) 44, 141
AspLEI GCGC 1 cut(s) 1305
AspS9I GGNCC 5 cut(s) 733, 847, 1250, 1362, 1363
AsuC2I CCSGG 1 cut(s) 1085
AsuHPI GGTGA 2 cut(s) 430, 448
AvaI CYCGRG 2 cut(s) 869, 910
AvaII GGWCC 2 cut(s) 733, 1250
BaeGI GKGCMC 2 cut(s) 825, 1366
BanI GGYRCC 3 cut(s) 675, 822, 1108
BanII GRGCYC 5 cut(s) 397, 523, 751, 1280, 1366
BauI CACGAG 1 cut(s) 918
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 4 cut(s) 397, 523, 751, 919
BbvI GCAGC 9 cut(s) 30, 115, 235, 238, 275, 287, 334, 562, 1171
BccI CCATC 1 cut(s) 852
BcgI CGANNNNNNTGC 4 cut(s) 167, 201, 539, 573
BcnI CCSGG 1 cut(s) 1085
BcoDI GTCTC 4 cut(s) 210, 712, 917, 1384
BcuI ACTAGT 1 cut(s) 493
BfaI CTAG 4 cut(s) 383, 494, 672, 1098
BmcAI AGTACT 1 cut(s) 1058
Bme1390I CCNGG 1 cut(s) 1085
Bme18I GGWCC 2 cut(s) 733, 1250
BmeT110I CYCGRG 2 cut(s) 869, 910
BmgT120I GGNCC 5 cut(s) 733, 847, 1250, 1362, 1363
BmiI GGNNCC 6 cut(s) 677, 824, 1110, 1187, 1252, 1364
BmrFI CCNGG 1 cut(s) 1085
BmsI GCATC 4 cut(s) 103, 197, 470, 1290
BpiI GAAGAC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 1085
BsaHI GRCGYC 1 cut(s) 319
BsaI GGTCTC 2 cut(s) 210, 917
BsaJI CCNNGG 4 cut(s) 699, 1125, 1131, 1348
BsaWI WCCGGW 2 cut(s) 118, 160
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 910
Bse118I RCCGGY 1 cut(s) 940
Bse1I ACTGG 1 cut(s) 1054
Bse3DI GCAATG 4 cut(s) 183, 225, 243, 999
BseAI TCCGGA 2 cut(s) 118, 160
BseDI CCNNGG 4 cut(s) 699, 1125, 1131, 1348
BseGI GGATG 3 cut(s) 863, 885, 1305
BseLI CCNNNNNNNGG 1 cut(s) 910
BseMI GCAATG 4 cut(s) 183, 225, 243, 999
BseMII CTCAG 2 cut(s) 629, 1074
BseNI ACTGG 1 cut(s) 1054
BseSI GKGCMC 2 cut(s) 825, 1366
BseXI GCAGC 9 cut(s) 30, 115, 235, 238, 275, 287, 334, 562, 1171
BseYI CCCAGC 1 cut(s) 1149
Bsh1236I CGCG 1 cut(s) 1305
BshFI GGCC 5 cut(s) 444, 849, 944, 1130, 1364
BshNI GGYRCC 3 cut(s) 675, 822, 1108
BsiHKAI GWGCWC 4 cut(s) 397, 523, 751, 919
BsiHKCI CYCGRG 2 cut(s) 869, 910
BsiSI CCGG 6 cut(s) 71, 119, 146, 161, 941, 1085
BslI CCNNNNNNNGG 1 cut(s) 910
BsmAI GTCTC 4 cut(s) 210, 712, 917, 1384
BsnI GGCC 5 cut(s) 444, 849, 944, 1130, 1364
Bso31I GGTCTC 2 cut(s) 210, 917
BsoBI CYCGRG 2 cut(s) 869, 910
Bsp120I GGGCCC 1 cut(s) 1362
Bsp1286I GDGCHC 7 cut(s) 397, 523, 751, 825, 919, 1280, 1366
Bsp13I TCCGGA 2 cut(s) 118, 160
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 1 cut(s) 1266
Bsp19I CCATGG 1 cut(s) 1348
BspACI CCGC 7 cut(s) 92, 255, 284, 287, 904, 1254, 1305
BspANI GGCC 5 cut(s) 444, 849, 944, 1130, 1364
BspCNI CTCAG 2 cut(s) 630, 1073
BspEI TCCGGA 2 cut(s) 118, 160
BspFNI CGCG 1 cut(s) 1305
BspLI GGNNCC 6 cut(s) 677, 824, 1110, 1187, 1252, 1364
BspPI GGATC 1 cut(s) 1261
BspQI GCTCTTC 1 cut(s) 621
BspT107I GGYRCC 3 cut(s) 675, 822, 1108
BspTNI GGTCTC 2 cut(s) 210, 917
BsrDI GCAATG 4 cut(s) 183, 225, 243, 999
BsrFI RCCGGY 1 cut(s) 940
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 1 cut(s) 1054
BssAI RCCGGY 1 cut(s) 940
BssECI CCNNGG 4 cut(s) 699, 1125, 1131, 1348
BssMI GATC 1 cut(s) 1266
BssNI GRCGYC 1 cut(s) 319
BssSI CACGAG 1 cut(s) 918
BssT1I CCWWGG 4 cut(s) 699, 1125, 1131, 1348
Bst2BI CACGAG 1 cut(s) 918
Bst4CI ACNGT 3 cut(s) 34, 363, 985
Bst6I CTCTTC 2 cut(s) 621, 710
BstACI GRCGYC 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 664
BstAUI TGTACA 1 cut(s) 502
BstC8I GCNNGC 8 cut(s) 462, 485, 489, 904, 1016, 1258, 1307, 1311
BstDEI CTNAG 3 cut(s) 60, 638, 1060
BstDSI CCRYGG 1 cut(s) 1348
BstF5I GGATG 3 cut(s) 863, 885, 1305
BstFNI CGCG 1 cut(s) 1305
BstHHI GCGC 1 cut(s) 1305
BstKTI GATC 1 cut(s) 1269
BstMAI GTCTC 4 cut(s) 210, 712, 917, 1384
BstMBI GATC 1 cut(s) 1266
BstNSI RCATGY 2 cut(s) 487, 569
BstSCI CCNGG 1 cut(s) 1083
BstSLI GKGCMC 2 cut(s) 825, 1366
BstUI CGCG 1 cut(s) 1305
BstV1I GCAGC 9 cut(s) 30, 115, 235, 238, 275, 287, 334, 562, 1171
BstV2I GAAGAC 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 232
BsuRI GGCC 5 cut(s) 444, 849, 944, 1130, 1364
BtgI CCRYGG 1 cut(s) 1348
BtgZI GCGATG 2 cut(s) 493, 870
BtsCI GGATG 3 cut(s) 863, 885, 1305
Cac8I GCNNGC 8 cut(s) 462, 485, 489, 904, 1016, 1258, 1307, 1311
CaiI CAGNNNCTG 1 cut(s) 251
CfoI GCGC 1 cut(s) 1305
Cfr10I RCCGGY 1 cut(s) 940
Cfr13I GGNCC 5 cut(s) 733, 847, 1250, 1362, 1363
CseI GACGC 1 cut(s) 269
Csp6I GTAC 4 cut(s) 503, 1057, 1094, 1136
CviQI GTAC 4 cut(s) 503, 1057, 1094, 1136
DdeI CTNAG 3 cut(s) 60, 638, 1060
DpnI GATC 1 cut(s) 1268
DpnII GATC 1 cut(s) 1266
EaeI YGGCCR 1 cut(s) 942
Eam1104I CTCTTC 2 cut(s) 621, 710
EarI CTCTTC 2 cut(s) 621, 710
Ecl136II GAGCTC 3 cut(s) 395, 521, 749
Eco130I CCWWGG 4 cut(s) 699, 1125, 1131, 1348
Eco24I GRGCYC 5 cut(s) 397, 523, 751, 1280, 1366
Eco31I GGTCTC 2 cut(s) 210, 917
Eco47I GGWCC 2 cut(s) 733, 1250
Eco53kI GAGCTC 3 cut(s) 395, 521, 749
Eco88I CYCGRG 2 cut(s) 869, 910
EcoICRI GAGCTC 3 cut(s) 395, 521, 749
EcoO109I RGGNCCY 2 cut(s) 1250, 1363
EcoT14I CCWWGG 4 cut(s) 699, 1125, 1131, 1348
EcoT22I ATGCAT 1 cut(s) 485
EcoT38I GRGCYC 5 cut(s) 397, 523, 751, 1280, 1366
ErhI CCWWGG 4 cut(s) 699, 1125, 1131, 1348
FauI CCCGC 3 cut(s) 911, 1261, 1298
FokI GGATG 3 cut(s) 870, 892, 1312
FriOI GRGCYC 5 cut(s) 397, 523, 751, 1280, 1366
FspBI CTAG 4 cut(s) 383, 494, 672, 1098
GlaI GCGC 1 cut(s) 1304
GsaI CCCAGC 1 cut(s) 1153
HaeIII GGCC 5 cut(s) 444, 849, 944, 1130, 1364
HapII CCGG 6 cut(s) 71, 119, 146, 161, 941, 1085
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 1305
Hin1I GRCGYC 1 cut(s) 319
Hin6I GCGC 1 cut(s) 1303
HinP1I GCGC 1 cut(s) 1303
HincII GTYRAC 1 cut(s) 1025
HindII GTYRAC 1 cut(s) 1025
HindIII AAGCTT 1 cut(s) 1012
HinfI GANTC 6 cut(s) 65, 528, 556, 995, 1229, 1340
HpaII CCGG 6 cut(s) 71, 119, 146, 161, 941, 1085
HphI GGTGA 2 cut(s) 430, 448
Hpy166II GTNNAC 4 cut(s) 503, 563, 571, 1025
Hpy188I TCNGA 2 cut(s) 456, 976
Hpy188III TCNNGA 5 cut(s) 28, 119, 161, 912, 1034
Hpy8I GTNNAC 4 cut(s) 503, 563, 571, 1025
Hpy99I CGWCG 3 cut(s) 393, 528, 965
HpyAV CCTTC 2 cut(s) 76, 403
HpyCH4III ACNGT 3 cut(s) 34, 363, 985
HpyCH4IV ACGT 2 cut(s) 319, 450
HpyCH4V TGCA 7 cut(s) 188, 200, 350, 483, 487, 667, 1004
HpyF3I CTNAG 3 cut(s) 60, 638, 1060
HpySE526I ACGT 2 cut(s) 319, 450
Hsp92I GRCGYC 1 cut(s) 319
HspAI GCGC 1 cut(s) 1303
Kpn2I TCCGGA 2 cut(s) 118, 160
Kzo9I GATC 1 cut(s) 1266
LguI GCTCTTC 1 cut(s) 621
LmnI GCTCC 2 cut(s) 121, 914
Lsp1109I GCAGC 9 cut(s) 30, 115, 235, 238, 275, 287, 334, 562, 1171
LweI GCATC 4 cut(s) 103, 197, 470, 1290
MaeI CTAG 4 cut(s) 383, 494, 672, 1098
MaeII ACGT 2 cut(s) 319, 450
MaeIII GTNAC 2 cut(s) 423, 1292
MalI GATC 1 cut(s) 1268
MboI GATC 1 cut(s) 1266
MfeI CAATTG 1 cut(s) 533
MhlI GDGCHC 7 cut(s) 397, 523, 751, 825, 919, 1280, 1366
MluCI AATT 2 cut(s) 533, 862
MlyI GAGTC 3 cut(s) 59, 522, 989
MmeI TCCRAC 2 cut(s) 857, 1367
Mph1103I ATGCAT 1 cut(s) 485
MroI TCCGGA 2 cut(s) 118, 160
MroXI GAANNNNTTC 2 cut(s) 44, 141
MseI TTAA 2 cut(s) 36, 602
MslI CAYNNNNRTG 5 cut(s) 230, 684, 726, 810, 932
MspA1I CMGCKG 2 cut(s) 21, 248
MspI CCGG 6 cut(s) 71, 119, 146, 161, 941, 1085
MspR9I CCNGG 1 cut(s) 1085
MunI CAATTG 1 cut(s) 533
MvnI CGCG 1 cut(s) 1305
NciI CCSGG 1 cut(s) 1085
NcoI CCATGG 1 cut(s) 1348
NdeII GATC 1 cut(s) 1266
NlaIV GGNNCC 6 cut(s) 677, 824, 1110, 1187, 1252, 1364
NsiI ATGCAT 1 cut(s) 485
NspI RCATGY 2 cut(s) 487, 569
PaeI GCATGC 1 cut(s) 487
PaeR7I CTCGAG 1 cut(s) 869
PciI ACATGT 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 621
PcsI WCGNNNNNNNCGW 1 cut(s) 523
PdmI GAANNNNTTC 2 cut(s) 44, 141
PfeI GAWTC 3 cut(s) 556, 1229, 1340
PleI GAGTC 3 cut(s) 59, 522, 989
PpsI GAGTC 3 cut(s) 59, 522, 989
PpuMI RGGWCCY 1 cut(s) 1250
PscI ACATGT 1 cut(s) 565
Psp124BI GAGCTC 3 cut(s) 397, 523, 751
Psp1406I AACGTT 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 1250
PspFI CCCAGC 1 cut(s) 1149
PspN4I GGNNCC 6 cut(s) 677, 824, 1110, 1187, 1252, 1364
PspOMI GGGCCC 1 cut(s) 1362
PspPI GGNCC 5 cut(s) 733, 847, 1250, 1362, 1363
PspPPI RGGWCCY 1 cut(s) 1250
PspXI VCTCGAGB 1 cut(s) 869
PstNI CAGNNNCTG 1 cut(s) 251
PvuII CAGCTG 2 cut(s) 21, 248
RsaI GTAC 4 cut(s) 504, 1058, 1095, 1137
RsaNI GTAC 4 cut(s) 503, 1057, 1094, 1136
RseI CAYNNNNRTG 5 cut(s) 230, 684, 726, 810, 932
SacI GAGCTC 3 cut(s) 397, 523, 751
SapI GCTCTTC 1 cut(s) 621
SaqAI TTAA 2 cut(s) 36, 602
Sau3AI GATC 1 cut(s) 1266
Sau96I GGNCC 5 cut(s) 733, 847, 1250, 1362, 1363
ScaI AGTACT 1 cut(s) 1058
SchI GAGTC 3 cut(s) 59, 522, 989
ScrFI CCNGG 1 cut(s) 1085
SduI GDGCHC 7 cut(s) 397, 523, 751, 825, 919, 1280, 1366
SfaNI GCATC 4 cut(s) 103, 197, 470, 1290
Sfr274I CTCGAG 1 cut(s) 869
SinI GGWCC 2 cut(s) 733, 1250
SlaI CTCGAG 1 cut(s) 869
SmiMI CAYNNNNRTG 5 cut(s) 230, 684, 726, 810, 932
SmlI CTYRAG 2 cut(s) 279, 869
SmoI CTYRAG 2 cut(s) 279, 869
SpeI ACTAGT 1 cut(s) 493
SphI GCATGC 1 cut(s) 487
Sse9I AATT 2 cut(s) 533, 862
SsiI CCGC 7 cut(s) 92, 255, 284, 287, 904, 1254, 1305
SspMI CTAG 4 cut(s) 383, 494, 672, 1098
SstI GAGCTC 3 cut(s) 397, 523, 751
StyD4I CCNGG 1 cut(s) 1083
StyI CCWWGG 4 cut(s) 699, 1125, 1131, 1348
TaaI ACNGT 3 cut(s) 34, 363, 985
TaiI ACGT 2 cut(s) 322, 453
TaqI TCGA 7 cut(s) 29, 388, 517, 523, 713, 870, 1066
TasI AATT 2 cut(s) 533, 862
TatI WGTACW 2 cut(s) 502, 1056
TauI GCSGC 3 cut(s) 257, 287, 290
TfiI GAWTC 3 cut(s) 556, 1229, 1340
Tru1I TTAA 2 cut(s) 36, 602
Tru9I TTAA 2 cut(s) 36, 602
TseI GCWGC 9 cut(s) 18, 103, 248, 251, 263, 275, 347, 550, 1159
TspDTI ATGAA 5 cut(s) 222, 603, 675, 702, 1370
VpaK11BI GGWCC 2 cut(s) 733, 1250
XceI RCATGY 2 cut(s) 487, 569
XhoI CTCGAG 1 cut(s) 869
XmnI GAANNNNTTC 2 cut(s) 44, 141
XspI CTAG 4 cut(s) 383, 494, 672, 1098
ZraI GACGTC 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 1058
Zsp2I ATGCAT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.