Rorug01G0422100

IQ-DOMAIN 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007423
Physical Location & Seq
Reverse (-)
52316676 .. 52318129
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0422100.1

Sequence Viewer

Length: 759 bp
ATGGCTAGGATTGCGCTGGCTGCTCGATTCCAACGAGTAATTACTCCTAATGCTCTCCGATCTTATCTTGCAGAGTTCATCTCAACCTTCTTCTTCGTCTTCGCTGTTGTCGGTTCGATGATGTCCTCCAGAAAGCTGATGCCAGATGCTGCATCAGACCCAGCTAGTCTGGTGTTGGTTGCCATAACCAATGCCTTTGCACTGGCCTCGGCCGTTTACATCTCGGCCTCCACCTCTGGCGGCCATGTAAATCCGGCCGTCACCTTTGCCATGGCCGTTGGAGGTCACATTAGTGTCCCCATTGCCCTCATCTACTGGATTTGCCAAATGGTGGCTGCTGTCATGGCTTGCCTTCTCTTAAAAGTCACTGTTGTTGGACAGCATGTTCCAACATATGCAATTACAGAAGAAATGACAGGATTTGGAGCCTCAGTTTTGGAGGGTGTGCTAACATTTGCACTAGTTTACACTGTTTATGCTGCTGGTGATCCAAGACATGGTGCATTGGGGGCTATGGGGCCCTTAGCCATCGGGCTCATGGCAGGGGCCAATGTATTGGCAACCGGGCCGTTCTCCGGCGGATCCATGAACCCGGCTTGTGCATTCGGGTCTGCAGTCATTGCTGGTAGCTTCAAGAACCAAGCGGTTTACTGGGTCGGGCCGTTGATTGGTGCTGCAGTTGCTGGTCTTTTGTATGACAATGTGGTGTTCCCTATTCAAGATTCGAGTACTGGGAATGCAGATGGAATTGTAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

252

Amino Acids

25.8

Weight (kDa)

6.38

Isoelectric Point (pI)

28.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 16 - 232 2.4e-57 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 331, 497
AciI CCGC 3 cut(s) 240, 579, 644
AclWI GGATC 3 cut(s) 482, 576, 589
AcoI YGGCCR 4 cut(s) 210, 241, 255, 273
AfaI GTAC 1 cut(s) 730
AfiI CCNNNNNNNGG 4 cut(s) 331, 497, 575, 668
AgsI TTSAA 2 cut(s) 634, 719
AhlI ACTAGT 1 cut(s) 460
AleI CACNNNNGTG 1 cut(s) 291
AloI GAACNNNNNNTCC 2 cut(s) 369, 401
AluBI AGCT 3 cut(s) 136, 164, 630
AluI AGCT 3 cut(s) 136, 164, 630
AlwI GGATC 3 cut(s) 482, 576, 589
AlwNI CAGNNNCTG 2 cut(s) 149, 683
ApaI GGGCCC 1 cut(s) 522
ApeKI GCWGC 5 cut(s) 20, 149, 335, 479, 674
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 5 cut(s) 518, 519, 546, 566, 659
AsuC2I CCSGG 2 cut(s) 565, 593
AsuHPI GGTGA 2 cut(s) 253, 497
BaeGI GKGCMC 1 cut(s) 522
BamHI GGATCC 1 cut(s) 581
BanII GRGCYC 2 cut(s) 522, 537
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 5 cut(s) 7, 136, 322, 466, 661
BccI CCATC 2 cut(s) 536, 737
BceAI ACGGC 5 cut(s) 197, 242, 260, 553, 646
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BcnI CCSGG 2 cut(s) 565, 593
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 3 cut(s) 6, 165, 461
BfmI CTRYAG 2 cut(s) 612, 675
BisI GCNGC 6 cut(s) 21, 150, 241, 336, 480, 675
BlsI GCNGC 6 cut(s) 22, 151, 242, 337, 481, 676
BmcAI AGTACT 1 cut(s) 730
Bme1390I CCNGG 2 cut(s) 565, 593
BmgT120I GGNCC 5 cut(s) 518, 519, 546, 566, 659
BmiI GGNNCC 5 cut(s) 427, 519, 520, 547, 583
BmrFI CCNGG 2 cut(s) 565, 593
BmrI ACTGGG 2 cut(s) 661, 741
BmsI GCATC 3 cut(s) 129, 136, 161
BmuI ACTGGG 2 cut(s) 661, 741
BpiI GAAGAC 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 523
BpuMI CCSGG 2 cut(s) 565, 593
BsaJI CCNNGG 2 cut(s) 207, 270
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 4 cut(s) 331, 497, 575, 668
Bse1I ACTGG 4 cut(s) 207, 320, 656, 736
Bse3DI GCAATG 2 cut(s) 300, 618
BseDI CCNNGG 2 cut(s) 207, 270
BseLI CCNNNNNNNGG 4 cut(s) 331, 497, 575, 668
BseMI GCAATG 2 cut(s) 300, 618
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 4 cut(s) 207, 320, 656, 736
BseSI GKGCMC 1 cut(s) 522
BseX3I CGGCCG 2 cut(s) 210, 255
BseXI GCAGC 5 cut(s) 7, 136, 322, 466, 661
BseYI CCCAGC 1 cut(s) 160
Bsh1285I CGRYCG 2 cut(s) 213, 258
BsiEI CGRYCG 2 cut(s) 213, 258
BsiSI CCGG 4 cut(s) 254, 564, 576, 593
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 4 cut(s) 331, 497, 575, 668
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 2 cut(s) 602, 742
Bsp120I GGGCCC 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 522, 537
Bsp143I GATC 3 cut(s) 59, 487, 581
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 3 cut(s) 240, 579, 644
BspCNI CTCAG 1 cut(s) 443
BspLI GGNNCC 5 cut(s) 427, 519, 520, 547, 583
BspMAI CTGCAG 2 cut(s) 616, 679
BspPI GGATC 3 cut(s) 482, 576, 589
BsrDI GCAATG 2 cut(s) 300, 618
BsrI ACTGG 4 cut(s) 207, 320, 656, 736
BssECI CCNNGG 2 cut(s) 207, 270
BssMI GATC 3 cut(s) 59, 487, 581
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 370, 472
BstAPI GCANNNNNTGC 1 cut(s) 620
BstC8I GCNNGC 2 cut(s) 18, 349
BstDEI CTNAG 2 cut(s) 430, 523
BstDSI CCRYGG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 3 cut(s) 62, 490, 584
BstMBI GATC 3 cut(s) 59, 487, 581
BstMCI CGRYCG 2 cut(s) 213, 258
BstMWI GCNNNNNNNGC 6 cut(s) 11, 20, 344, 509, 620, 680
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 2 cut(s) 563, 591
BstSFI CTRYAG 2 cut(s) 612, 675
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 5 cut(s) 7, 136, 322, 466, 661
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 581
BstXI CCANNNNNNTGG 1 cut(s) 556
BstYI RGATCY 1 cut(s) 581
BstZI CGGCCG 2 cut(s) 210, 255
BtgI CCRYGG 1 cut(s) 270
BtsIMutI CAGTG 3 cut(s) 200, 366, 468
Cac8I GCNNGC 2 cut(s) 18, 349
CaiI CAGNNNCTG 2 cut(s) 149, 683
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 5 cut(s) 518, 519, 546, 566, 659
Csp6I GTAC 1 cut(s) 729
CviAII CATG 7 cut(s) 245, 271, 343, 383, 497, 538, 586
CviQI GTAC 1 cut(s) 729
DdeI CTNAG 2 cut(s) 430, 523
DpnI GATC 3 cut(s) 61, 489, 583
DpnII GATC 3 cut(s) 59, 487, 581
EaeI YGGCCR 4 cut(s) 210, 241, 255, 273
EagI CGGCCG 2 cut(s) 210, 255
EciI GGCGGA 1 cut(s) 594
EclXI CGGCCG 2 cut(s) 210, 255
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 2 cut(s) 522, 537
Eco52I CGGCCG 2 cut(s) 210, 255
EcoO109I RGGNCCY 2 cut(s) 518, 519
EcoT14I CCWWGG 1 cut(s) 270
EcoT38I GRGCYC 2 cut(s) 522, 537
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 7 cut(s) 248, 274, 346, 386, 500, 541, 589
FaqI GGGAC 1 cut(s) 281
FatI CATG 7 cut(s) 244, 270, 342, 382, 496, 537, 585
FauNDI CATATG 1 cut(s) 394
Fnu4HI GCNGC 6 cut(s) 21, 150, 241, 336, 480, 675
FriOI GRGCYC 2 cut(s) 522, 537
Fsp4HI GCNGC 6 cut(s) 21, 150, 241, 336, 480, 675
FspBI CTAG 3 cut(s) 6, 165, 461
GlaI GCGC 1 cut(s) 15
GluI GCNGC 6 cut(s) 21, 150, 241, 336, 480, 675
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 112
HapII CCGG 4 cut(s) 254, 564, 576, 593
HhaI GCGC 1 cut(s) 16
Hin1II CATG 7 cut(s) 248, 274, 346, 386, 500, 541, 589
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 2 cut(s) 27, 722
HpaII CCGG 4 cut(s) 254, 564, 576, 593
HphI GGTGA 2 cut(s) 253, 497
Hpy166II GTNNAC 3 cut(s) 217, 466, 649
Hpy188I TCNGA 2 cut(s) 59, 157
Hpy188III TCNNGA 3 cut(s) 129, 634, 719
Hpy8I GTNNAC 3 cut(s) 217, 466, 649
HpyAV CCTTC 2 cut(s) 97, 362
HpyCH4III ACNGT 2 cut(s) 370, 472
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 20, 344, 509, 620, 680
HpyF3I CTNAG 2 cut(s) 430, 523
Hsp92II CATG 7 cut(s) 248, 274, 346, 386, 500, 541, 589
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 3 cut(s) 59, 487, 581
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 5 cut(s) 7, 136, 322, 466, 661
LweI GCATC 3 cut(s) 129, 136, 161
MaeI CTAG 3 cut(s) 6, 165, 461
MaeIII GTNAC 3 cut(s) 259, 284, 364
MalI GATC 3 cut(s) 61, 489, 583
MboI GATC 3 cut(s) 59, 487, 581
MboII GAAGA 4 cut(s) 82, 85, 91, 419
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 2 cut(s) 522, 537
MluCI AATT 3 cut(s) 39, 399, 747
MmeI TCCRAC 4 cut(s) 55, 259, 355, 413
MnlI CCTC 8 cut(s) 136, 217, 238, 244, 275, 317, 433, 439
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 4 cut(s) 254, 564, 576, 593
MspR9I CCNGG 2 cut(s) 565, 593
Mva1269I GAATGC 2 cut(s) 602, 742
MwoI GCNNNNNNNGC 6 cut(s) 11, 20, 344, 509, 620, 680
NciI CCSGG 2 cut(s) 565, 593
NcoI CCATGG 1 cut(s) 270
NdeI CATATG 1 cut(s) 394
NdeII GATC 3 cut(s) 59, 487, 581
NlaIII CATG 7 cut(s) 248, 274, 346, 386, 500, 541, 589
NlaIV GGNNCC 5 cut(s) 427, 519, 520, 547, 583
NmeAIII GCCGAG 2 cut(s) 188, 203
NmuCI GTSAC 3 cut(s) 259, 284, 364
NspI RCATGY 1 cut(s) 386
OliI CACNNNNGTG 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PctI GAATGC 2 cut(s) 602, 742
PfeI GAWTC 2 cut(s) 27, 722
PflMI CCANNNNNTGG 2 cut(s) 331, 497
PkrI GCNGC 6 cut(s) 22, 151, 242, 337, 481, 676
PspFI CCCAGC 1 cut(s) 160
PspN4I GGNNCC 5 cut(s) 427, 519, 520, 547, 583
PspOMI GGGCCC 1 cut(s) 518
PspPI GGNCC 5 cut(s) 518, 519, 546, 566, 659
PstI CTGCAG 2 cut(s) 616, 679
PstNI CAGNNNCTG 2 cut(s) 149, 683
PsuI RGATCY 1 cut(s) 581
RsaI GTAC 1 cut(s) 730
RsaNI GTAC 1 cut(s) 729
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 6 cut(s) 21, 150, 241, 336, 480, 675
Sau3AI GATC 3 cut(s) 59, 487, 581
Sau96I GGNCC 5 cut(s) 518, 519, 546, 566, 659
ScaI AGTACT 1 cut(s) 730
ScrFI CCNGG 2 cut(s) 565, 593
SduI GDGCHC 2 cut(s) 522, 537
SetI ASST 7 cut(s) 89, 138, 166, 236, 266, 286, 632
SfaNI GCATC 3 cut(s) 129, 136, 161
SfcI CTRYAG 2 cut(s) 612, 675
SmiMI CAYNNNNRTG 1 cut(s) 291
SpeI ACTAGT 1 cut(s) 460
Sse9I AATT 3 cut(s) 39, 399, 747
SsiI CCGC 3 cut(s) 240, 579, 644
SspMI CTAG 3 cut(s) 6, 165, 461
StyD4I CCNGG 2 cut(s) 563, 591
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 370, 472
TaqI TCGA 3 cut(s) 25, 116, 725
TasI AATT 3 cut(s) 39, 399, 747
TatI WGTACW 1 cut(s) 728
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 2 cut(s) 27, 722
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 3 cut(s) 207, 373, 475
TseFI GTSAC 3 cut(s) 259, 284, 364
TseI GCWGC 5 cut(s) 20, 149, 335, 479, 674
Tsp45I GTSAC 3 cut(s) 259, 284, 364
TspDTI ATGAA 2 cut(s) 67, 602
TspRI CASTG 3 cut(s) 207, 373, 475
Van91I CCANNNNNTGG 2 cut(s) 331, 497
XceI RCATGY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XspI CTAG 3 cut(s) 6, 165, 461
ZrmI AGTACT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.