FvH4_7g33240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018089
Physical Location & Seq
Reverse (-)
23688252 .. 23688917
666 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33240.t1

Sequence Viewer

Length: 468 bp
ATGGGAGGCTGTGCGAGCAAACCCAAGGAGTTCAATGAACGTACCAAGGAGACCGCTCCGGTTGAGCAGCCTGCCAAGGTAGAGGAGACAGTTGCCGCTACCGCTGCTGAGACCACCACTTCTGCTGATGATAACAAGGAGAGCAGCGGATCAAAGGACAAGAGTATTGAGGATGAAACACCTTTGGTGGATCTCTCGAAGTCTGAGGAGGGAGAAAACAAGGAAACAATAGCCGCTGAGGCCGTGCCGGTGCTTGTACTTCCCGGAGAGGCTATTGTGGTAGAGAACCCGAAAGGGGAGACAGTTGAAGTCGAGGTTGCTGCCAAGGAAGGTGAGATCATATACGTTGAGGCTGTCAAGGAGACCAAGAAGGAGGAGGAGAAGGAGAAGAAGGAAGAAGAAAAACCTAAGACCACTCCGGCCGCCACCTCCGAGGACAAGAATGAAGAGCCCCTTGTCAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.69

Weight (kDa)

4.49

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018089)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33240
prunus_persica Prupe.2G321400_v2.0.a1
pyrus_communis pycom07g27550
rosa_laevigata RLG00000026121
rosa_multiflora Rmu_sc0007173.1_g000026
rosa_roxburghii Rroxscaffold_4G00277490
rosa_samantha Rh1AG465300 Rh1BG422700 Rh1CG435900 Rh1DG455400
rosa_wichuraiana Rw1G040710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 56
AciI CCGC 6 cut(s) 54, 96, 102, 147, 234, 423
AclWI GGATC 2 cut(s) 157, 198
AcoI YGGCCR 1 cut(s) 420
AfaI GTAC 2 cut(s) 43, 258
AfiI CCNNNNNNNGG 1 cut(s) 295
AgsI TTSAA 2 cut(s) 34, 308
Alw26I GTCTC 5 cut(s) 44, 80, 104, 293, 356
AlwI GGATC 2 cut(s) 157, 198
AoxI GGCC 2 cut(s) 240, 420
ApeKI GCWGC 4 cut(s) 67, 104, 144, 320
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 344
BanII GRGCYC 1 cut(s) 453
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 4 cut(s) 79, 91, 156, 307
BceAI ACGGC 1 cut(s) 227
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 5 cut(s) 44, 80, 104, 293, 356
BglI GCCNNNNNGGC 1 cut(s) 239
BisI GCNGC 7 cut(s) 68, 96, 105, 145, 234, 321, 423
BlsI GCNGC 7 cut(s) 69, 97, 106, 146, 235, 322, 424
Bme1390I CCNGG 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 264
BsaI GGTCTC 3 cut(s) 44, 104, 356
BsaJI CCNNGG 5 cut(s) 24, 45, 75, 324, 432
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse118I RCCGGY 1 cut(s) 247
BseDI CCNNGG 5 cut(s) 24, 45, 75, 324, 432
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMII CTCAG 3 cut(s) 99, 195, 228
BseRI GAGGAG 4 cut(s) 98, 221, 389, 392
BseX3I CGGCCG 1 cut(s) 420
BseXI GCAGC 4 cut(s) 79, 91, 156, 307
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 2 cut(s) 242, 422
BsiEI CGRYCG 1 cut(s) 423
BsiSI CCGG 4 cut(s) 59, 248, 264, 419
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 5 cut(s) 44, 80, 104, 293, 356
BsnI GGCC 2 cut(s) 242, 422
Bso31I GGTCTC 3 cut(s) 44, 104, 356
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 3 cut(s) 149, 190, 336
BspACI CCGC 6 cut(s) 54, 96, 102, 147, 234, 423
BspANI GGCC 2 cut(s) 242, 422
BspCNI CTCAG 3 cut(s) 100, 196, 229
BspPI GGATC 2 cut(s) 157, 198
BspQI GCTCTTC 1 cut(s) 441
BspTNI GGTCTC 3 cut(s) 44, 104, 356
BsrBI CCGCTC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 5 cut(s) 24, 45, 75, 324, 432
BssMI GATC 3 cut(s) 149, 190, 336
BssT1I CCWWGG 4 cut(s) 24, 45, 75, 324
Bst4CI ACNGT 2 cut(s) 91, 304
Bst6I CTCTTC 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 16, 72
BstDEI CTNAG 4 cut(s) 108, 204, 237, 408
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 3 cut(s) 152, 193, 339
BstMAI GTCTC 5 cut(s) 44, 80, 104, 293, 356
BstMBI GATC 3 cut(s) 149, 190, 336
BstMCI CGRYCG 1 cut(s) 423
BstMWI GCNNNNNNNGC 4 cut(s) 15, 101, 104, 239
BstSCI CCNGG 1 cut(s) 262
BstV1I GCAGC 4 cut(s) 79, 91, 156, 307
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZI CGGCCG 1 cut(s) 420
BsuRI GGCC 2 cut(s) 242, 422
BtsCI GGATG 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 16, 72
Cfr10I RCCGGY 1 cut(s) 247
Csp6I GTAC 2 cut(s) 42, 257
CviJI RGCY 8 cut(s) 9, 70, 233, 242, 272, 353, 422, 451
CviKI_1 RGCY 8 cut(s) 9, 70, 233, 242, 272, 353, 422, 451
CviQI GTAC 2 cut(s) 42, 257
DdeI CTNAG 4 cut(s) 108, 204, 237, 408
DpnI GATC 3 cut(s) 151, 192, 338
DpnII GATC 3 cut(s) 149, 190, 336
EaeI YGGCCR 1 cut(s) 420
EagI CGGCCG 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
EclXI CGGCCG 1 cut(s) 420
Eco130I CCWWGG 4 cut(s) 24, 45, 75, 324
Eco24I GRGCYC 1 cut(s) 453
Eco31I GGTCTC 3 cut(s) 44, 104, 356
Eco52I CGGCCG 1 cut(s) 420
EcoT14I CCWWGG 4 cut(s) 24, 45, 75, 324
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 4 cut(s) 24, 45, 75, 324
FaiI YATR 3 cut(s) 341, 343, 466
FalI AAGNNNNNCTT 1 cut(s) 438
Fnu4HI GCNGC 7 cut(s) 68, 96, 105, 145, 234, 321, 423
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 7 cut(s) 68, 96, 105, 145, 234, 321, 423
GluI GCNGC 7 cut(s) 68, 96, 105, 145, 234, 321, 423
HaeIII GGCC 2 cut(s) 242, 422
HapII CCGG 4 cut(s) 59, 248, 264, 419
HpaII CCGG 4 cut(s) 59, 248, 264, 419
HphI GGTGA 1 cut(s) 344
Hpy188I TCNGA 2 cut(s) 205, 433
Hpy188III TCNNGA 1 cut(s) 196
HpyAV CCTTC 4 cut(s) 323, 364, 376, 385
HpyCH4III ACNGT 2 cut(s) 91, 304
HpyCH4IV ACGT 2 cut(s) 40, 345
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 101, 104, 239
HpyF3I CTNAG 4 cut(s) 108, 204, 237, 408
HpySE526I ACGT 2 cut(s) 40, 345
Kzo9I GATC 3 cut(s) 149, 190, 336
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 5 cut(s) 72, 84, 261, 277, 432
Lsp1109I GCAGC 4 cut(s) 79, 91, 156, 307
MaeII ACGT 2 cut(s) 40, 345
MalI GATC 3 cut(s) 151, 192, 338
MbiI CCGCTC 1 cut(s) 56
MboI GATC 3 cut(s) 149, 190, 336
MboII GAAGA 4 cut(s) 400, 407, 410, 458
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 453
MspA1I CMGCKG 3 cut(s) 104, 147, 236
MspI CCGG 4 cut(s) 59, 248, 264, 419
MspR9I CCNGG 1 cut(s) 264
MwoI GCNNNNNNNGC 4 cut(s) 15, 101, 104, 239
NciI CCSGG 1 cut(s) 264
NdeII GATC 3 cut(s) 149, 190, 336
PciSI GCTCTTC 1 cut(s) 441
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 7 cut(s) 69, 97, 106, 146, 235, 322, 424
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 2 cut(s) 43, 258
RsaNI GTAC 2 cut(s) 42, 257
SapI GCTCTTC 1 cut(s) 441
SatI GCNGC 7 cut(s) 68, 96, 105, 145, 234, 321, 423
Sau3AI GATC 3 cut(s) 149, 190, 336
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 453
SetI ASST 8 cut(s) 43, 81, 184, 318, 334, 348, 409, 431
SsiI CCGC 6 cut(s) 54, 96, 102, 147, 234, 423
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 4 cut(s) 24, 45, 75, 324
TaaI ACNGT 2 cut(s) 91, 304
TaiI ACGT 2 cut(s) 43, 348
TaqI TCGA 2 cut(s) 197, 312
TatI WGTACW 1 cut(s) 256
TauI GCSGC 3 cut(s) 98, 236, 425
TseI GCWGC 4 cut(s) 67, 104, 144, 320
TspDTI ATGAA 3 cut(s) 51, 189, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.