RLG00000026121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018089
Physical Location & Seq
Forward (+)
657301 .. 657759
459 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026121

Sequence Viewer

Length: 459 bp
ATGGGAGGCTGTGCGAGCAAACCAAAGGAGTTGACGGAAACCAGCCCCGACACTGCTCCGGTTGAGGAGCCCGTCAAGGCCGAGGAGACCGTTGCCGCCAAGGCTGAGACCACTGCTGATGATGATAAGAAGGACAGCAGCGGATCAGATGATAAGAGTAAGGATGAAGCACCTTTGGTAGATCTCTCGAAGCCCGATGAGGACGAAAAGAAGGAAACAAAAGCCGCTGAGGCCGTGCCCGTGCTCGTACTTCCCGGAGAATCTATTGTGGTAGAGAACCCGAAAGGGGAGACAGTTGAAGTCGAGGTCGCTGCCAAGGAAGGTGAGATCATATACGTCGAGGCTGTCAAGGAGACCAAAAAGGAGGAGAAGGAGAAAAAGGAAGCACAAGAAGACCCCAAGACTGCTCCTCCGGCCACCTCAGAGGACAAGAAGGAAGAGCTCCTTGTCAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.3

Weight (kDa)

4.46

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018089)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33240
prunus_persica Prupe.2G321400_v2.0.a1
pyrus_communis pycom07g27550
rosa_laevigata RLG00000026121
rosa_multiflora Rmu_sc0007173.1_g000026
rosa_roxburghii Rroxscaffold_4G00277490
rosa_samantha Rh1AG465300 Rh1BG422700 Rh1CG435900 Rh1DG455400
rosa_wichuraiana Rw1G040710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 96, 141, 225
AclWI GGATC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 414
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 299
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw21I GWGCWC 2 cut(s) 246, 444
Alw26I GTCTC 4 cut(s) 80, 101, 284, 347
AlwI GGATC 1 cut(s) 151
AoxI GGCC 3 cut(s) 78, 231, 414
ApeKI GCWGC 2 cut(s) 138, 311
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 240
BanII GRGCYC 2 cut(s) 72, 444
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 2 cut(s) 246, 444
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 150, 298
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 4 cut(s) 80, 101, 284, 347
BglI GCCNNNNNGGC 2 cut(s) 101, 230
BglII AGATCT 1 cut(s) 181
BisI GCNGC 4 cut(s) 96, 139, 225, 312
BlsI GCNGC 4 cut(s) 97, 140, 226, 313
Bme1390I CCNGG 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 255
BsaI GGTCTC 3 cut(s) 80, 101, 347
BsaJI CCNNGG 3 cut(s) 81, 99, 315
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 286
BseDI CCNNGG 3 cut(s) 81, 99, 315
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 3 cut(s) 96, 219, 435
BseRI GAGGAG 4 cut(s) 80, 98, 380, 399
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 2 cut(s) 150, 298
BshFI GGCC 3 cut(s) 80, 233, 416
BsiHKAI GWGCWC 2 cut(s) 246, 444
BsiSI CCGG 3 cut(s) 59, 255, 413
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 4 cut(s) 80, 101, 284, 347
BsnI GGCC 3 cut(s) 80, 233, 416
Bso31I GGTCTC 3 cut(s) 80, 101, 347
Bsp1286I GDGCHC 4 cut(s) 72, 240, 246, 444
Bsp143I GATC 3 cut(s) 143, 181, 327
BspACI CCGC 3 cut(s) 96, 141, 225
BspANI GGCC 3 cut(s) 80, 233, 416
BspCNI CTCAG 3 cut(s) 97, 220, 434
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 432
BspTNI GGTCTC 3 cut(s) 80, 101, 347
BssECI CCNNGG 3 cut(s) 81, 99, 315
BssMI GATC 3 cut(s) 143, 181, 327
BssT1I CCWWGG 2 cut(s) 99, 315
Bst4CI ACNGT 2 cut(s) 91, 295
Bst6I CTCTTC 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 3 cut(s) 105, 228, 421
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 3 cut(s) 146, 184, 330
BstMAI GTCTC 4 cut(s) 80, 101, 284, 347
BstMBI GATC 3 cut(s) 143, 181, 327
BstMWI GCNNNNNNNGC 4 cut(s) 15, 101, 230, 413
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 150, 298
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 3 cut(s) 80, 233, 416
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 2 cut(s) 51, 111
BtsIMutI CAGTG 2 cut(s) 51, 111
Cac8I GCNNGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 248
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 3 cut(s) 105, 228, 421
DpnI GATC 3 cut(s) 145, 183, 329
DpnII GATC 3 cut(s) 143, 181, 327
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Ecl136II GAGCTC 1 cut(s) 442
Eco130I CCWWGG 2 cut(s) 99, 315
Eco24I GRGCYC 2 cut(s) 72, 444
Eco31I GGTCTC 3 cut(s) 80, 101, 347
Eco53kI GAGCTC 1 cut(s) 442
EcoICRI GAGCTC 1 cut(s) 442
EcoT14I CCWWGG 2 cut(s) 99, 315
EcoT38I GRGCYC 2 cut(s) 72, 444
ErhI CCWWGG 2 cut(s) 99, 315
FaiI YATR 3 cut(s) 332, 334, 457
FalI AAGNNNNNCTT 1 cut(s) 429
Fnu4HI GCNGC 4 cut(s) 96, 139, 225, 312
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 2 cut(s) 72, 444
Fsp4HI GCNGC 4 cut(s) 96, 139, 225, 312
GluI GCNGC 4 cut(s) 96, 139, 225, 312
HaeIII GGCC 3 cut(s) 80, 233, 416
HapII CCGG 3 cut(s) 59, 255, 413
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 1 cut(s) 260
HpaII CCGG 3 cut(s) 59, 255, 413
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 148, 424
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 5 cut(s) 124, 205, 314, 364, 427
HpyCH4III ACNGT 2 cut(s) 91, 295
HpyCH4IV ACGT 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 101, 230, 413
HpyF3I CTNAG 3 cut(s) 105, 228, 421
HpySE526I ACGT 1 cut(s) 336
Kzo9I GATC 3 cut(s) 143, 181, 327
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 4 cut(s) 61, 67, 412, 447
LpnPI CCDG 4 cut(s) 55, 72, 268, 426
Lsp1109I GCAGC 2 cut(s) 150, 298
MaeII ACGT 1 cut(s) 336
MalI GATC 3 cut(s) 145, 183, 329
MboI GATC 3 cut(s) 143, 181, 327
MboII GAAGA 2 cut(s) 404, 449
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 4 cut(s) 72, 240, 246, 444
MspA1I CMGCKG 2 cut(s) 141, 227
MspI CCGG 3 cut(s) 59, 255, 413
MspR9I CCNGG 1 cut(s) 255
MwoI GCNNNNNNNGC 4 cut(s) 15, 101, 230, 413
NciI CCSGG 1 cut(s) 255
NdeII GATC 3 cut(s) 143, 181, 327
NlaIV GGNNCC 1 cut(s) 69
NmeAIII GCCGAG 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 260
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 4 cut(s) 97, 140, 226, 313
Psp124BI GAGCTC 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SacI GAGCTC 1 cut(s) 444
SapI GCTCTTC 1 cut(s) 432
SatI GCNGC 4 cut(s) 96, 139, 225, 312
Sau3AI GATC 3 cut(s) 143, 181, 327
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 4 cut(s) 72, 240, 246, 444
SetI ASST 6 cut(s) 175, 309, 325, 339, 422, 444
SsiI CCGC 3 cut(s) 96, 141, 225
SstI GAGCTC 1 cut(s) 444
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 2 cut(s) 99, 315
TaaI ACNGT 2 cut(s) 91, 295
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 188, 303, 339
TauI GCSGC 2 cut(s) 98, 227
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 2 cut(s) 58, 118
TseI GCWGC 2 cut(s) 138, 311
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 58, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.