Prupe.2G321400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0018089
Physical Location & Seq
Reverse (-)
29882127 .. 29882893
767 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G321400.1

Sequence Viewer

Length: 576 bp
ATGGGAGGCTGCGCGAGCAAACCAAAGGAGTTCGATACCGCCCGCCCTGAGGCTCTCCCAACTGAGTCCACCAGACCCGAGAAAGCAGACCGTGAAGCTGAAACGACTACTGATAGTACCAACGTTGCAGCTAATCAAGGGGCGGAGGACACCACCAACACCACCAATGTAGAAGCTGAAGCACCTCTGGTAGATCTCTCAGAGCCAAGGGAGGAGGAGGAGGAGGAAGCCGCACCTGTTGTTGTTCCTGCTGCTGCTGCTGCTGAGGCTAAGCCTGAGGCTGCGGCTGCGGCTGAGGTGGTACCAACTCAGAAACCAAAAGAGGAAAAAGTAGCTGATCAAGTTGAAGTTGCTGCCAGGCAACTAGCAGAGGTCAATCTTGTTGAGGCTGCTAAGGAGACCAAAGAGAAAGAGCTGCTGCCGGCTCAAGAGATCAAACCAAAGGCCAAAGAGGAGCAGCCTGCTGCAGAGATCAAACCCAAGGCCAAGGAGGAGGAGCCTGCTGCAGACATCAAACCAAAGGCAGCTCCTGCCTCAGAGGGCAAGAATAAAGATGCACCTATTCTCACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

20.15

Weight (kDa)

4.53

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018089)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33240
prunus_persica Prupe.2G321400_v2.0.a1
pyrus_communis pycom07g27550
rosa_laevigata RLG00000026121
rosa_multiflora Rmu_sc0007173.1_g000026
rosa_roxburghii Rroxscaffold_4G00277490
rosa_samantha Rh1AG465300 Rh1BG422700 Rh1CG435900 Rh1DG455400
rosa_wichuraiana Rw1G040710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 301
AccII CGCG 1 cut(s) 14
AciI CCGC 6 cut(s) 39, 43, 143, 231, 284, 290
AclI AACGTT 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 2 cut(s) 118, 303
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 6 cut(s) 98, 131, 176, 335, 415, 527
AluI AGCT 6 cut(s) 98, 131, 176, 335, 415, 527
Alw26I GTCTC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 530
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 2 cut(s) 444, 483
Asp718I GGTACC 1 cut(s) 301
AspLEI GCGC 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 77
AxyI CCTNAGG 2 cut(s) 48, 276
BanI GGYRCC 1 cut(s) 301
BbvCI CCTCAGC 2 cut(s) 264, 294
BciT130I CCWGG 1 cut(s) 358
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 2 cut(s) 465, 504
BglII AGATCT 1 cut(s) 193
BlpI GCTNAGC 1 cut(s) 270
Bme1390I CCNGG 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 303, 498
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 1 cut(s) 544
Bpu10I CCTNAGC 3 cut(s) 264, 294, 393
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 206, 480, 486
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse118I RCCGGY 1 cut(s) 421
Bse21I CCTNAGG 2 cut(s) 48, 276
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 3 cut(s) 206, 480, 486
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 8 cut(s) 39, 54, 213, 255, 267, 285, 323, 549
BseRI GAGGAG 7 cut(s) 227, 230, 233, 236, 467, 506, 509
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 446, 485
BshNI GGYRCC 1 cut(s) 301
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 422
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 2 cut(s) 446, 485
Bso31I GGTCTC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 77
Bsp143I GATC 4 cut(s) 193, 337, 432, 471
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 6 cut(s) 39, 43, 143, 231, 284, 290
BspANI GGCC 2 cut(s) 446, 485
BspCNI CTCAG 8 cut(s) 40, 55, 212, 256, 268, 286, 322, 548
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 303, 498
BspMAI CTGCAG 2 cut(s) 469, 508
BspT107I GGYRCC 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 392
BsrFI RCCGGY 1 cut(s) 421
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 3 cut(s) 206, 480, 486
BssMI GATC 4 cut(s) 193, 337, 432, 471
BssT1I CCWWGG 3 cut(s) 206, 480, 486
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 2 cut(s) 92, 571
BstAPI GCANNNNNTGC 1 cut(s) 530
BstC8I GCNNGC 5 cut(s) 16, 43, 423, 462, 501
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 4 cut(s) 196, 340, 435, 474
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 4 cut(s) 193, 337, 432, 471
BstMWI GCNNNNNNNGC 7 cut(s) 15, 257, 260, 266, 287, 290, 530
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 2 cut(s) 465, 504
BstUI CGCG 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
Bsu36I CCTNAGG 2 cut(s) 48, 276
BsuRI GGCC 2 cut(s) 446, 485
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 5 cut(s) 16, 43, 423, 462, 501
CaiI CAGNNNCTG 1 cut(s) 530
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 421
Csp6I GTAC 2 cut(s) 117, 302
CviQI GTAC 2 cut(s) 117, 302
DpnI GATC 4 cut(s) 195, 339, 434, 473
DpnII GATC 4 cut(s) 193, 337, 432, 471
EciI GGCGGA 1 cut(s) 158
Eco130I CCWWGG 3 cut(s) 206, 480, 486
Eco31I GGTCTC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 198
Eco81I CCTNAGG 2 cut(s) 48, 276
Eco88I CYCGRG 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 356
EcoT14I CCWWGG 3 cut(s) 206, 480, 486
ErhI CCWWGG 3 cut(s) 206, 480, 486
FauI CCCGC 1 cut(s) 50
FbaI TGATCA 1 cut(s) 337
FspBI CTAG 1 cut(s) 365
GlaI GCGC 1 cut(s) 13
HaeIII GGCC 2 cut(s) 446, 485
HapII CCGG 1 cut(s) 422
HhaI GCGC 1 cut(s) 14
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 422
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 3 cut(s) 202, 312, 538
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 1 cut(s) 69
HpyCH4III ACNGT 2 cut(s) 92, 571
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 4 cut(s) 128, 467, 506, 557
HpyF10VI GCNNNNNNNGC 7 cut(s) 15, 257, 260, 266, 287, 290, 530
HpySE526I ACGT 1 cut(s) 123
HspAI GCGC 1 cut(s) 12
KpnI GGTACC 1 cut(s) 305
KroI GCCGGC 1 cut(s) 421
KroNI GCCGGC 1 cut(s) 423
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 4 cut(s) 193, 337, 432, 471
LmnI GCTCC 3 cut(s) 454, 496, 532
LweI GCATC 1 cut(s) 544
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 123
MalI GATC 4 cut(s) 195, 339, 434, 473
MboI GATC 4 cut(s) 193, 337, 432, 471
MflI RGATCY 1 cut(s) 193
MlyI GAGTC 1 cut(s) 74
MroNI GCCGGC 1 cut(s) 421
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 358
MvaI CCWGG 1 cut(s) 358
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 7 cut(s) 15, 257, 260, 266, 287, 290, 530
NaeI GCCGGC 1 cut(s) 423
NdeII GATC 4 cut(s) 193, 337, 432, 471
NgoMIV GCCGGC 1 cut(s) 421
NlaIV GGNNCC 2 cut(s) 303, 498
PdiI GCCGGC 1 cut(s) 423
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp1406I AACGTT 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 303, 498
PstI CTGCAG 2 cut(s) 469, 508
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 2 cut(s) 118, 303
RsaNI GTAC 2 cut(s) 117, 302
Sau3AI GATC 4 cut(s) 193, 337, 432, 471
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 358
SfaNI GCATC 1 cut(s) 544
SfcI CTRYAG 2 cut(s) 465, 504
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
SsiI CCGC 6 cut(s) 39, 43, 143, 231, 284, 290
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 3 cut(s) 206, 480, 486
TaaI ACNGT 2 cut(s) 92, 571
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 33
TauI GCSGC 3 cut(s) 233, 287, 293
TscAI CASTG 1 cut(s) 574
TspRI CASTG 1 cut(s) 574
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.