Rh1AG465300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018089
Physical Location & Seq
Reverse (-)
68058730 .. 68059459
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG465300.1

Sequence Viewer

Length: 459 bp
ATGGGAGGCTGTGCGAGCAAACCTAAGGAGTTGACGGAAACCAGCCGCGACGCTGCTCCGGTTGAGGAGCCCGTCAAGGCCGAGGAGACAGTTGCCGCCAAGGCTGAGACCACTGCTGATGATAAGAAGGACAGCAGCGGATCAGATGATAAGAGTAAGGATGAAGCACCTTTGGTAGATCTCTCGAAGCCCGATGAGGACAAAAAGAAGGAAACAAAAGCCGCTGAGGCCGTGCCCGTGCTCGTACTTCCCGGAGAATCTATTGTGGTAGAGAACCCGAAAGGGGAGACAGTTGAAGTCGAGGTCGCTGCCAAGGAAGGTGAGATCATATACGTTGAGGCTGTTAAGGAGACCAAAAAGGAGGAGGAGAAGGAGAAAAAGGAAGCACAAGAAAAACCCAAGACTGCTCCTCCGGCCACCTCAGAGGACAAGAAGGAAGAGCTCCTTGTCAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.36

Weight (kDa)

4.67

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018089)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33240
prunus_persica Prupe.2G321400_v2.0.a1
pyrus_communis pycom07g27550
rosa_laevigata RLG00000026121
rosa_multiflora Rmu_sc0007173.1_g000026
rosa_roxburghii Rroxscaffold_4G00277490
rosa_samantha Rh1AG465300 Rh1BG422700 Rh1CG435900 Rh1DG455400
rosa_wichuraiana Rw1G040710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 48
AciI CCGC 4 cut(s) 46, 96, 138, 222
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 414
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 1 cut(s) 296
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw21I GWGCWC 2 cut(s) 243, 444
Alw26I GTCTC 4 cut(s) 80, 101, 281, 344
AlwI GGATC 1 cut(s) 148
AoxI GGCC 3 cut(s) 78, 228, 414
ApeKI GCWGC 3 cut(s) 53, 135, 308
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 332
AxyI CCTNAGG 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 237
BanII GRGCYC 2 cut(s) 72, 444
Bbv12I GWGCWC 2 cut(s) 243, 444
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 40, 147, 295
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 4 cut(s) 80, 101, 281, 344
BglI GCCNNNNNGGC 2 cut(s) 101, 227
BglII AGATCT 1 cut(s) 178
BisI GCNGC 6 cut(s) 46, 54, 96, 136, 222, 309
BlsI GCNGC 6 cut(s) 47, 55, 97, 137, 223, 310
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 252
BsaI GGTCTC 2 cut(s) 101, 344
BsaJI CCNNGG 3 cut(s) 81, 99, 312
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse21I CCTNAGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 81, 99, 312
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 3 cut(s) 96, 216, 435
BseRI GAGGAG 5 cut(s) 80, 98, 377, 380, 399
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 3 cut(s) 40, 147, 295
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 3 cut(s) 80, 230, 416
BsiHKAI GWGCWC 2 cut(s) 243, 444
BsiSI CCGG 3 cut(s) 59, 252, 413
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 4 cut(s) 80, 101, 281, 344
BsnI GGCC 3 cut(s) 80, 230, 416
Bso31I GGTCTC 2 cut(s) 101, 344
Bsp1286I GDGCHC 4 cut(s) 72, 237, 243, 444
Bsp143I GATC 3 cut(s) 140, 178, 324
BspACI CCGC 4 cut(s) 46, 96, 138, 222
BspANI GGCC 3 cut(s) 80, 230, 416
BspCNI CTCAG 3 cut(s) 97, 217, 434
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 432
BspTNI GGTCTC 2 cut(s) 101, 344
BssECI CCNNGG 3 cut(s) 81, 99, 312
BssMI GATC 3 cut(s) 140, 178, 324
BssT1I CCWWGG 2 cut(s) 99, 312
Bst4CI ACNGT 2 cut(s) 91, 292
Bst6I CTCTTC 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 24, 105, 225, 421
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 3 cut(s) 143, 181, 327
BstMAI GTCTC 4 cut(s) 80, 101, 281, 344
BstMBI GATC 3 cut(s) 140, 178, 324
BstMWI GCNNNNNNNGC 4 cut(s) 15, 101, 227, 413
BstSCI CCNGG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 3 cut(s) 40, 147, 295
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 3 cut(s) 80, 230, 416
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 16
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 245
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 4 cut(s) 24, 105, 225, 421
DpnI GATC 3 cut(s) 142, 180, 326
DpnII GATC 3 cut(s) 140, 178, 324
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Ecl136II GAGCTC 1 cut(s) 442
Eco130I CCWWGG 2 cut(s) 99, 312
Eco24I GRGCYC 2 cut(s) 72, 444
Eco31I GGTCTC 2 cut(s) 101, 344
Eco53kI GAGCTC 1 cut(s) 442
Eco81I CCTNAGG 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 442
EcoT14I CCWWGG 2 cut(s) 99, 312
EcoT38I GRGCYC 2 cut(s) 72, 444
ErhI CCWWGG 2 cut(s) 99, 312
FaiI YATR 3 cut(s) 329, 331, 457
FalI AAGNNNNNCTT 1 cut(s) 429
Fnu4HI GCNGC 6 cut(s) 46, 54, 96, 136, 222, 309
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 2 cut(s) 72, 444
Fsp4HI GCNGC 6 cut(s) 46, 54, 96, 136, 222, 309
GluI GCNGC 6 cut(s) 46, 54, 96, 136, 222, 309
HaeIII GGCC 3 cut(s) 80, 230, 416
HapII CCGG 3 cut(s) 59, 252, 413
HgaI GACGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 1 cut(s) 257
HpaII CCGG 3 cut(s) 59, 252, 413
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 145, 424
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 5 cut(s) 121, 202, 311, 364, 427
HpyCH4III ACNGT 2 cut(s) 91, 292
HpyCH4IV ACGT 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 101, 227, 413
HpyF3I CTNAG 4 cut(s) 24, 105, 225, 421
HpySE526I ACGT 1 cut(s) 333
Kzo9I GATC 3 cut(s) 140, 178, 324
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 4 cut(s) 61, 67, 412, 447
LpnPI CCDG 4 cut(s) 55, 72, 265, 426
Lsp1109I GCAGC 3 cut(s) 40, 147, 295
MaeII ACGT 1 cut(s) 333
MalI GATC 3 cut(s) 142, 180, 326
MboI GATC 3 cut(s) 140, 178, 324
MboII GAAGA 1 cut(s) 449
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 4 cut(s) 72, 237, 243, 444
MseI TTAA 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 138, 224
MspI CCGG 3 cut(s) 59, 252, 413
MspR9I CCNGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 15, 101, 227, 413
NciI CCSGG 1 cut(s) 252
NdeII GATC 3 cut(s) 140, 178, 324
NlaIV GGNNCC 1 cut(s) 69
NmeAIII GCCGAG 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 6 cut(s) 47, 55, 97, 137, 223, 310
Psp124BI GAGCTC 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SacI GAGCTC 1 cut(s) 444
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 6 cut(s) 46, 54, 96, 136, 222, 309
Sau3AI GATC 3 cut(s) 140, 178, 324
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 4 cut(s) 72, 237, 243, 444
SetI ASST 7 cut(s) 25, 172, 306, 322, 336, 422, 444
SsiI CCGC 4 cut(s) 46, 96, 138, 222
SstI GAGCTC 1 cut(s) 444
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 2 cut(s) 99, 312
TaaI ACNGT 2 cut(s) 91, 292
TaiI ACGT 1 cut(s) 336
TaqI TCGA 2 cut(s) 185, 300
TauI GCSGC 3 cut(s) 48, 98, 224
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 118
TseI GCWGC 3 cut(s) 53, 135, 308
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.