Rroxscaffold_4G00277490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018089
Physical Location & Seq
Forward (+)
875966 .. 876403
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00277490.1

Sequence Viewer

Length: 438 bp
ATGGGAGGCTGTGCGAGCAAACCTAAGGACTTGACGGAAACCAACCCCGACGCTGCTCCGGTTGAGGAGCCCGTCAAGGCCGAGGAGACAGTTGCCGCCAAGGCTGAGACCACTGCTGACGATCAGAAGGACAGCAGCGGATCAGATGATAAGAGTAAGGATGAAGCACCTTTGGTAGATCTCTCGAAGCCCGATGAGGACGAAAAGAAGGAAACAAAAGCCGCTGAGGCCGTGCCCGTGCTCGTACTTCCCGGAGAATCTATTGTGGTAGAGAACCCGAAAGGGGAGACAGTTGAAGTCGAGGTCGCTGCCAAGGAAGGTGAGATCATATACGTTGAGGCTGTCAAGGAGACCAAAAAGGAAGCACAAGAAGAACCCAAGACTGCTCCTCCGGCCACCTCAGAGGACAAGAAGGAAGAGCTCCTTGTCAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.41

Weight (kDa)

4.38

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018089)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33240
prunus_persica Prupe.2G321400_v2.0.a1
pyrus_communis pycom07g27550
rosa_laevigata RLG00000026121
rosa_multiflora Rmu_sc0007173.1_g000026
rosa_roxburghii Rroxscaffold_4G00277490
rosa_samantha Rh1AG465300 Rh1BG422700 Rh1CG435900 Rh1DG455400
rosa_wichuraiana Rw1G040710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 96, 138, 222
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 393
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 1 cut(s) 296
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw21I GWGCWC 2 cut(s) 243, 423
Alw26I GTCTC 4 cut(s) 80, 101, 281, 344
AlwI GGATC 1 cut(s) 148
AoxI GGCC 3 cut(s) 78, 228, 393
ApeKI GCWGC 3 cut(s) 53, 135, 308
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 332
AxyI CCTNAGG 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 237
BanII GRGCYC 2 cut(s) 72, 423
Bbv12I GWGCWC 2 cut(s) 243, 423
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 40, 147, 295
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 4 cut(s) 80, 101, 281, 344
BglI GCCNNNNNGGC 2 cut(s) 101, 227
BglII AGATCT 1 cut(s) 178
BisI GCNGC 5 cut(s) 54, 96, 136, 222, 309
BlsI GCNGC 5 cut(s) 55, 97, 137, 223, 310
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 252
BsaI GGTCTC 2 cut(s) 101, 344
BsaJI CCNNGG 3 cut(s) 81, 99, 312
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse21I CCTNAGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 81, 99, 312
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 3 cut(s) 96, 216, 414
BseRI GAGGAG 3 cut(s) 80, 98, 378
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 3 cut(s) 40, 147, 295
BshFI GGCC 3 cut(s) 80, 230, 395
BsiHKAI GWGCWC 2 cut(s) 243, 423
BsiSI CCGG 3 cut(s) 59, 252, 392
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 4 cut(s) 80, 101, 281, 344
BsnI GGCC 3 cut(s) 80, 230, 395
Bso31I GGTCTC 2 cut(s) 101, 344
Bsp1286I GDGCHC 4 cut(s) 72, 237, 243, 423
Bsp143I GATC 4 cut(s) 121, 140, 178, 324
BspACI CCGC 3 cut(s) 96, 138, 222
BspANI GGCC 3 cut(s) 80, 230, 395
BspCNI CTCAG 3 cut(s) 97, 217, 413
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 411
BspTNI GGTCTC 2 cut(s) 101, 344
BssECI CCNNGG 3 cut(s) 81, 99, 312
BssMI GATC 4 cut(s) 121, 140, 178, 324
BssT1I CCWWGG 2 cut(s) 99, 312
Bst4CI ACNGT 2 cut(s) 91, 292
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 24, 105, 225, 400
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 4 cut(s) 124, 143, 181, 327
BstMAI GTCTC 4 cut(s) 80, 101, 281, 344
BstMBI GATC 4 cut(s) 121, 140, 178, 324
BstMWI GCNNNNNNNGC 4 cut(s) 15, 101, 227, 392
BstSCI CCNGG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 40, 147, 295
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 3 cut(s) 80, 230, 395
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 16
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 245
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 4 cut(s) 24, 105, 225, 400
DpnI GATC 4 cut(s) 123, 142, 180, 326
DpnII GATC 4 cut(s) 121, 140, 178, 324
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 2 cut(s) 99, 312
Eco24I GRGCYC 2 cut(s) 72, 423
Eco31I GGTCTC 2 cut(s) 101, 344
Eco53kI GAGCTC 1 cut(s) 421
Eco81I CCTNAGG 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 99, 312
EcoT38I GRGCYC 2 cut(s) 72, 423
ErhI CCWWGG 2 cut(s) 99, 312
FaiI YATR 3 cut(s) 329, 331, 436
FalI AAGNNNNNCTT 1 cut(s) 408
Fnu4HI GCNGC 5 cut(s) 54, 96, 136, 222, 309
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 2 cut(s) 72, 423
Fsp4HI GCNGC 5 cut(s) 54, 96, 136, 222, 309
GluI GCNGC 5 cut(s) 54, 96, 136, 222, 309
HaeIII GGCC 3 cut(s) 80, 230, 395
HapII CCGG 3 cut(s) 59, 252, 392
HgaI GACGC 1 cut(s) 59
HinfI GANTC 1 cut(s) 257
HpaII CCGG 3 cut(s) 59, 252, 392
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 3 cut(s) 126, 145, 403
Hpy188III TCNNGA 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 4 cut(s) 121, 202, 311, 406
HpyCH4III ACNGT 2 cut(s) 91, 292
HpyCH4IV ACGT 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 101, 227, 392
HpyF3I CTNAG 4 cut(s) 24, 105, 225, 400
HpySE526I ACGT 1 cut(s) 333
Kzo9I GATC 4 cut(s) 121, 140, 178, 324
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 4 cut(s) 61, 67, 391, 426
LpnPI CCDG 3 cut(s) 72, 265, 405
Lsp1109I GCAGC 3 cut(s) 40, 147, 295
MaeII ACGT 1 cut(s) 333
MalI GATC 4 cut(s) 123, 142, 180, 326
MboI GATC 4 cut(s) 121, 140, 178, 324
MboII GAAGA 2 cut(s) 383, 428
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 4 cut(s) 72, 237, 243, 423
MnlI CCTC 9 cut(s) 58, 76, 190, 220, 295, 331, 397, 399, 409
MspA1I CMGCKG 2 cut(s) 138, 224
MspI CCGG 3 cut(s) 59, 252, 392
MspR9I CCNGG 1 cut(s) 252
MwoI GCNNNNNNNGC 4 cut(s) 15, 101, 227, 392
NciI CCSGG 1 cut(s) 252
NdeII GATC 4 cut(s) 121, 140, 178, 324
NlaIV GGNNCC 1 cut(s) 69
NmeAIII GCCGAG 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 5 cut(s) 55, 97, 137, 223, 310
Psp124BI GAGCTC 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SacI GAGCTC 1 cut(s) 423
SapI GCTCTTC 1 cut(s) 411
SatI GCNGC 5 cut(s) 54, 96, 136, 222, 309
Sau3AI GATC 4 cut(s) 121, 140, 178, 324
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 4 cut(s) 72, 237, 243, 423
SetI ASST 7 cut(s) 25, 172, 306, 322, 336, 401, 423
SsiI CCGC 3 cut(s) 96, 138, 222
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 2 cut(s) 99, 312
TaaI ACNGT 2 cut(s) 91, 292
TaiI ACGT 1 cut(s) 336
TaqI TCGA 2 cut(s) 185, 300
TauI GCSGC 2 cut(s) 98, 224
TfiI GAWTC 1 cut(s) 257
TscAI CASTG 1 cut(s) 118
TseI GCWGC 3 cut(s) 53, 135, 308
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.