Rh1CG435900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018089
Physical Location & Seq
Reverse (-)
69101808 .. 69102893
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG435900.1

Sequence Viewer

Length: 462 bp
ATGGGAGGCTGTGCGAGCAAACCTAAGGAGTTGACGGAAACCAACCCCGACGCTGCTCCGGTTGAGGAGCCCGTCAAGGCCGAGGAGACCGTTGCCGCCAAGGCTGAGACCACTGCTGATGATGATAAGAAGGACAGCAGCGGATCAGATGATAAGAGTAAGGATGAAGCACCTTTGGTAGATCTCTCGAAGCCCGATGAGGACGAAAAGAAGGAAACAAAAGCCGCTGAGGCCGTGCCCGTGCTCGTACTTCCCGGAGAATCTATTGTGGTAGAGAACCCGAAAGGGGAGACAGTTGAAGTCGAGGTCGCTGCCAAGGAAGGTGAGATCATATACGTTGAGGCTGTCAAGGAGACCAAAAAGGAGGAGGAGAAGGAGAAAAAGGAAGCACAAGAAGAACCCAAGACTGCTCCTCCGGCCACCTCAGAGGACAAGAAGGAAGTGCTCCTTGTCAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.41

Weight (kDa)

4.47

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018089)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33240
prunus_persica Prupe.2G321400_v2.0.a1
pyrus_communis pycom07g27550
rosa_laevigata RLG00000026121
rosa_multiflora Rmu_sc0007173.1_g000026
rosa_roxburghii Rroxscaffold_4G00277490
rosa_samantha Rh1AG465300 Rh1BG422700 Rh1CG435900 Rh1DG455400
rosa_wichuraiana Rw1G040710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 96, 141, 225
AclWI GGATC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 417
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 299
Alw21I GWGCWC 2 cut(s) 246, 447
Alw26I GTCTC 4 cut(s) 80, 101, 284, 347
AlwI GGATC 1 cut(s) 151
AoxI GGCC 3 cut(s) 78, 231, 417
ApeKI GCWGC 3 cut(s) 53, 138, 311
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 335
AxyI CCTNAGG 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 246, 447
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 40, 150, 298
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 4 cut(s) 80, 101, 284, 347
BglI GCCNNNNNGGC 2 cut(s) 101, 230
BglII AGATCT 1 cut(s) 181
BisI GCNGC 5 cut(s) 54, 96, 139, 225, 312
BlsI GCNGC 5 cut(s) 55, 97, 140, 226, 313
Bme1390I CCNGG 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 255
BsaI GGTCTC 3 cut(s) 80, 101, 347
BsaJI CCNNGG 3 cut(s) 81, 99, 315
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse21I CCTNAGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 81, 99, 315
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 3 cut(s) 96, 219, 438
BseRI GAGGAG 5 cut(s) 80, 98, 380, 383, 402
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 3 cut(s) 40, 150, 298
BshFI GGCC 3 cut(s) 80, 233, 419
BsiHKAI GWGCWC 2 cut(s) 246, 447
BsiSI CCGG 3 cut(s) 59, 255, 416
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 4 cut(s) 80, 101, 284, 347
BsnI GGCC 3 cut(s) 80, 233, 419
Bso31I GGTCTC 3 cut(s) 80, 101, 347
Bsp1286I GDGCHC 4 cut(s) 72, 240, 246, 447
Bsp143I GATC 3 cut(s) 143, 181, 327
BspACI CCGC 3 cut(s) 96, 141, 225
BspANI GGCC 3 cut(s) 80, 233, 419
BspCNI CTCAG 3 cut(s) 97, 220, 437
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 151
BspTNI GGTCTC 3 cut(s) 80, 101, 347
BssECI CCNNGG 3 cut(s) 81, 99, 315
BssMI GATC 3 cut(s) 143, 181, 327
BssT1I CCWWGG 2 cut(s) 99, 315
Bst4CI ACNGT 2 cut(s) 91, 295
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 24, 105, 228, 424
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 3 cut(s) 146, 184, 330
BstMAI GTCTC 4 cut(s) 80, 101, 284, 347
BstMBI GATC 3 cut(s) 143, 181, 327
BstMWI GCNNNNNNNGC 4 cut(s) 15, 101, 230, 416
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 40, 150, 298
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 3 cut(s) 80, 233, 419
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 16
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 248
CviJI RGCY 9 cut(s) 9, 70, 80, 104, 193, 224, 233, 344, 419
CviKI_1 RGCY 9 cut(s) 9, 70, 80, 104, 193, 224, 233, 344, 419
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 4 cut(s) 24, 105, 228, 424
DpnI GATC 3 cut(s) 145, 183, 329
DpnII GATC 3 cut(s) 143, 181, 327
EaeI YGGCCR 1 cut(s) 417
Eco130I CCWWGG 2 cut(s) 99, 315
Eco24I GRGCYC 1 cut(s) 72
Eco31I GGTCTC 3 cut(s) 80, 101, 347
Eco81I CCTNAGG 1 cut(s) 24
EcoT14I CCWWGG 2 cut(s) 99, 315
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 99, 315
FaiI YATR 3 cut(s) 332, 334, 460
FalI AAGNNNNNCTT 1 cut(s) 432
Fnu4HI GCNGC 5 cut(s) 54, 96, 139, 225, 312
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 5 cut(s) 54, 96, 139, 225, 312
GluI GCNGC 5 cut(s) 54, 96, 139, 225, 312
HaeIII GGCC 3 cut(s) 80, 233, 419
HapII CCGG 3 cut(s) 59, 255, 416
HgaI GACGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 1 cut(s) 260
HpaII CCGG 3 cut(s) 59, 255, 416
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 148, 427
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 5 cut(s) 124, 205, 314, 367, 430
HpyCH4III ACNGT 2 cut(s) 91, 295
HpyCH4IV ACGT 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 101, 230, 416
HpyF3I CTNAG 4 cut(s) 24, 105, 228, 424
HpySE526I ACGT 1 cut(s) 336
Kzo9I GATC 3 cut(s) 143, 181, 327
LmnI GCTCC 4 cut(s) 61, 67, 415, 450
LpnPI CCDG 3 cut(s) 72, 268, 429
Lsp1109I GCAGC 3 cut(s) 40, 150, 298
MaeII ACGT 1 cut(s) 336
MalI GATC 3 cut(s) 145, 183, 329
MboI GATC 3 cut(s) 143, 181, 327
MboII GAAGA 1 cut(s) 407
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 4 cut(s) 72, 240, 246, 447
MspA1I CMGCKG 2 cut(s) 141, 227
MspI CCGG 3 cut(s) 59, 255, 416
MspR9I CCNGG 1 cut(s) 255
MwoI GCNNNNNNNGC 4 cut(s) 15, 101, 230, 416
NciI CCSGG 1 cut(s) 255
NdeII GATC 3 cut(s) 143, 181, 327
NlaIV GGNNCC 1 cut(s) 69
NmeAIII GCCGAG 1 cut(s) 106
PfeI GAWTC 1 cut(s) 260
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 5 cut(s) 55, 97, 140, 226, 313
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SatI GCNGC 5 cut(s) 54, 96, 139, 225, 312
Sau3AI GATC 3 cut(s) 143, 181, 327
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 4 cut(s) 72, 240, 246, 447
SetI ASST 6 cut(s) 25, 175, 309, 325, 339, 425
SsiI CCGC 3 cut(s) 96, 141, 225
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 2 cut(s) 99, 315
TaaI ACNGT 2 cut(s) 91, 295
TaiI ACGT 1 cut(s) 339
TaqI TCGA 2 cut(s) 188, 303
TauI GCSGC 2 cut(s) 98, 227
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 1 cut(s) 118
TseI GCWGC 3 cut(s) 53, 138, 311
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.